data_8SVX # _model_server_result.job_id gnGsn7Hd4m40jVpuzvHmRw _model_server_result.datetime_utc '2024-10-10 12:13:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8svx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8SVX # _exptl.entry_id 8SVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SVX _cell.length_a 85.036 _cell.length_b 89.264 _cell.length_c 105.713 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8SVX _atom_sites.fract_transf_matrix[1][1] 0.01176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WU6 A 1 501 502 WU6 WU6 . D 3 DMS A 1 502 505 DMS DMS . E 2 WU6 B 1 501 502 WU6 WU6 . F 4 HOH A 1 601 602 HOH HOH . F 4 HOH A 2 602 603 HOH HOH . F 4 HOH A 3 603 605 HOH HOH . F 4 HOH A 4 604 607 HOH HOH . F 4 HOH A 5 605 614 HOH HOH . F 4 HOH A 6 606 609 HOH HOH . F 4 HOH A 7 607 610 HOH HOH . F 4 HOH A 8 608 606 HOH HOH . F 4 HOH A 9 609 608 HOH HOH . F 4 HOH A 10 610 612 HOH HOH . F 4 HOH A 11 611 611 HOH HOH . F 4 HOH A 12 612 619 HOH HOH . F 4 HOH A 13 613 625 HOH HOH . F 4 HOH A 14 614 615 HOH HOH . F 4 HOH A 15 615 620 HOH HOH . F 4 HOH A 16 616 621 HOH HOH . F 4 HOH A 17 617 613 HOH HOH . F 4 HOH A 18 618 623 HOH HOH . F 4 HOH A 19 619 617 HOH HOH . F 4 HOH A 20 620 618 HOH HOH . F 4 HOH A 21 621 624 HOH HOH . F 4 HOH A 22 622 616 HOH HOH . F 4 HOH A 23 623 622 HOH HOH . F 4 HOH A 24 624 627 HOH HOH . F 4 HOH A 25 625 636 HOH HOH . F 4 HOH A 26 626 626 HOH HOH . F 4 HOH A 27 627 629 HOH HOH . F 4 HOH A 28 628 637 HOH HOH . F 4 HOH A 29 629 635 HOH HOH . F 4 HOH A 30 630 2 HOH HOH . F 4 HOH A 31 631 630 HOH HOH . F 4 HOH A 32 632 632 HOH HOH . F 4 HOH A 33 633 631 HOH HOH . F 4 HOH A 34 634 640 HOH HOH . F 4 HOH A 35 635 638 HOH HOH . F 4 HOH A 36 636 639 HOH HOH . F 4 HOH A 37 637 641 HOH HOH . F 4 HOH A 38 638 643 HOH HOH . F 4 HOH A 39 639 645 HOH HOH . F 4 HOH A 40 640 642 HOH HOH . F 4 HOH A 41 641 644 HOH HOH . F 4 HOH A 42 642 648 HOH HOH . F 4 HOH A 43 643 649 HOH HOH . F 4 HOH A 44 644 654 HOH HOH . F 4 HOH A 45 645 653 HOH HOH . F 4 HOH A 46 646 655 HOH HOH . F 4 HOH A 47 647 656 HOH HOH . F 4 HOH A 48 648 657 HOH HOH . F 4 HOH A 49 649 645 HOH HOH . G 4 HOH B 1 601 602 HOH HOH . G 4 HOH B 2 602 603 HOH HOH . G 4 HOH B 3 603 1 HOH HOH . G 4 HOH B 4 604 613 HOH HOH . G 4 HOH B 5 605 617 HOH HOH . G 4 HOH B 6 606 606 HOH HOH . G 4 HOH B 7 607 608 HOH HOH . G 4 HOH B 8 608 605 HOH HOH . G 4 HOH B 9 609 607 HOH HOH . G 4 HOH B 10 610 611 HOH HOH . G 4 HOH B 11 611 612 HOH HOH . G 4 HOH B 12 612 610 HOH HOH . G 4 HOH B 13 613 616 HOH HOH . G 4 HOH B 14 614 609 HOH HOH . G 4 HOH B 15 615 620 HOH HOH . G 4 HOH B 16 616 614 HOH HOH . G 4 HOH B 17 617 619 HOH HOH . G 4 HOH B 18 618 615 HOH HOH . G 4 HOH B 19 619 621 HOH HOH . G 4 HOH B 20 620 623 HOH HOH . G 4 HOH B 21 621 627 HOH HOH . G 4 HOH B 22 622 618 HOH HOH . G 4 HOH B 23 623 626 HOH HOH . G 4 HOH B 24 624 622 HOH HOH . G 4 HOH B 25 625 624 HOH HOH . G 4 HOH B 26 626 625 HOH HOH . G 4 HOH B 27 627 628 HOH HOH . G 4 HOH B 28 628 629 HOH HOH . G 4 HOH B 29 629 631 HOH HOH . G 4 HOH B 30 630 632 HOH HOH . G 4 HOH B 31 631 634 HOH HOH . G 4 HOH B 32 632 637 HOH HOH . G 4 HOH B 33 633 636 HOH HOH . G 4 HOH B 34 634 638 HOH HOH . G 4 HOH B 35 635 639 HOH HOH . G 4 HOH B 36 636 641 HOH HOH . G 4 HOH B 37 637 642 HOH HOH . G 4 HOH B 38 638 643 HOH HOH . G 4 HOH B 39 639 644 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -11.545 13.954 -15.911 1 82.18 ? S DMS 502 A 1 HETATM 2 O O DMS . . . D 3 -10.637 12.976 -16.586 1 70.3 ? O DMS 502 A 1 HETATM 3 C C1 DMS . . . D 3 -11.07 15.641 -16.38 1 77.47 ? C1 DMS 502 A 1 HETATM 4 C C2 DMS . . . D 3 -11.153 14.018 -14.142 1 77.21 ? C2 DMS 502 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #