data_8SWK
#
_model_server_result.job_id            jO4xxNn8rhZz_NrpeB8SXA 
_model_server_result.datetime_utc      '2025-03-04 18:21:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8swk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1102}' 
#
_entry.id    8SWK 
#
_exptl.entry_id    8SWK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SWK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 123 n n 
PG O2G ATP sing 124 n n 
PG O3G ATP sing 125 n n 
PG O3B ATP sing 126 n n 
O2G HOG2 ATP sing 127 n n 
O3G HOG3 ATP sing 128 n n 
PB O1B ATP doub 129 n n 
PB O2B ATP sing 130 n n 
PB O3B ATP sing 131 n n 
PB O3A ATP sing 132 n n 
O2B HOB2 ATP sing 133 n n 
PA O1A ATP doub 134 n n 
PA O2A ATP sing 135 n n 
PA O3A ATP sing 136 n n 
PA O5' ATP sing 137 n n 
O2A HOA2 ATP sing 138 n n 
O5' C5' ATP sing 139 n n 
C5' C4' ATP sing 140 n n 
C5' "H5'1" ATP sing 141 n n 
C5' "H5'2" ATP sing 142 n n 
C4' O4' ATP sing 143 n n 
C4' C3' ATP sing 144 n n 
C4' H4' ATP sing 145 n n 
O4' C1' ATP sing 146 n n 
C3' O3' ATP sing 147 n n 
C3' C2' ATP sing 148 n n 
C3' H3' ATP sing 149 n n 
O3' HO3' ATP sing 150 n n 
C2' O2' ATP sing 151 n n 
C2' C1' ATP sing 152 n n 
C2' H2' ATP sing 153 n n 
O2' HO2' ATP sing 154 n n 
C1' N9 ATP sing 155 n n 
C1' H1' ATP sing 156 n n 
N9 C8 ATP sing 157 n y 
N9 C4 ATP sing 158 n y 
C8 N7 ATP doub 159 n y 
C8 H8 ATP sing 160 n n 
N7 C5 ATP sing 161 n y 
C5 C6 ATP sing 162 n y 
C5 C4 ATP doub 163 n y 
C6 N6 ATP sing 164 n n 
C6 N1 ATP doub 165 n y 
N6 HN61 ATP sing 166 n n 
N6 HN62 ATP sing 167 n n 
N1 C2 ATP sing 168 n y 
C2 N3 ATP doub 169 n y 
C2 H2 ATP sing 170 n n 
N3 C4 ATP sing 171 n y 
#
_atom_sites.entry_id                     8SWK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 7YN A 1 1101 1101 7YN LIG . 
H 3 ATP A 1 1102 1201 ATP ATP . 
I 2 7YN B 1 1101 1101 7YN LIG . 
J 3 ATP B 1 1102 1201 ATP ATP . 
K 2 7YN C 1 1101 1101 7YN LIG . 
L 3 ATP C 1 1102 1201 ATP ATP . 
M 2 7YN D 1 1101 1101 7YN LIG . 
N 3 ATP D 1 1102 1201 ATP ATP . 
O 2 7YN E 1 1101 1101 7YN LIG . 
P 3 ATP E 1 1102 1201 ATP ATP . 
Q 2 7YN F 1 1101 1101 7YN LIG . 
R 3 ATP F 1 1102 1201 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . N 3 188.636 139.339 112.792 1 138.79 ? PG ATP 1102 D 1 
HETATM 2 O O1G ATP . . . N 3 189.055 140.633 112.226 1 132.36 ? O1G ATP 1102 D 1 
HETATM 3 O O2G ATP . . . N 3 187.593 139.598 113.993 1 124.46 -1 O2G ATP 1102 D 1 
HETATM 4 O O3G ATP . . . N 3 187.889 138.492 111.658 1 146.09 ? O3G ATP 1102 D 1 
HETATM 5 P PB ATP . . . N 3 190.502 139.08 114.677 1 117.95 ? PB ATP 1102 D 1 
HETATM 6 O O1B ATP . . . N 3 190.81 140.519 114.532 1 118.34 -1 O1B ATP 1102 D 1 
HETATM 7 O O2B ATP . . . N 3 189.393 138.938 115.837 1 105.76 ? O2B ATP 1102 D 1 
HETATM 8 O O3B ATP . . . N 3 189.92 138.487 113.293 1 132.31 ? O3B ATP 1102 D 1 
HETATM 9 P PA ATP . . . N 3 191.645 136.984 115.917 1 123.87 ? PA ATP 1102 D 1 
HETATM 10 O O1A ATP . . . N 3 191.047 135.94 115.061 1 139.15 -1 O1A ATP 1102 D 1 
HETATM 11 O O2A ATP . . . N 3 190.696 137.269 117.177 1 110.24 ? O2A ATP 1102 D 1 
HETATM 12 O O3A ATP . . . N 3 191.889 138.329 115.059 1 121.72 ? O3A ATP 1102 D 1 
HETATM 13 O O5' ATP . . . N 3 193.066 136.462 116.507 1 123.21 ? O5' ATP 1102 D 1 
HETATM 14 C C5' ATP . . . N 3 192.977 135.228 117.278 1 125.22 ? C5' ATP 1102 D 1 
HETATM 15 C C4' ATP . . . N 3 193.985 135.312 118.441 1 105.47 ? C4' ATP 1102 D 1 
HETATM 16 O O4' ATP . . . N 3 193.484 136.263 119.427 1 102.04 ? O4' ATP 1102 D 1 
HETATM 17 C C3' ATP . . . N 3 194.141 133.95 119.187 1 121.02 ? C3' ATP 1102 D 1 
HETATM 18 O O3' ATP . . . N 3 195.511 133.549 119.27 1 123.13 ? O3' ATP 1102 D 1 
HETATM 19 C C2' ATP . . . N 3 193.621 134.248 120.607 1 118.8 ? C2' ATP 1102 D 1 
HETATM 20 O O2' ATP . . . N 3 194.377 133.549 121.6 1 125.36 ? O2' ATP 1102 D 1 
HETATM 21 C C1' ATP . . . N 3 193.84 135.766 120.743 1 103.16 ? C1' ATP 1102 D 1 
HETATM 22 N N9 ATP . . . N 3 192.972 136.336 121.8 1 105.91 ? N9 ATP 1102 D 1 
HETATM 23 C C8 ATP . . . N 3 192.189 137.452 121.675 1 111.81 ? C8 ATP 1102 D 1 
HETATM 24 N N7 ATP . . . N 3 191.46 137.63 122.739 1 114.83 ? N7 ATP 1102 D 1 
HETATM 25 C C5 ATP . . . N 3 191.733 136.657 123.635 1 112.64 ? C5 ATP 1102 D 1 
HETATM 26 C C6 ATP . . . N 3 191.239 136.33 124.931 1 132.97 ? C6 ATP 1102 D 1 
HETATM 27 N N6 ATP . . . N 3 190.3 137.142 125.525 1 139.91 ? N6 ATP 1102 D 1 
HETATM 28 N N1 ATP . . . N 3 191.743 135.247 125.576 1 139.29 ? N1 ATP 1102 D 1 
HETATM 29 C C2 ATP . . . N 3 192.659 134.45 124.984 1 132.16 ? C2 ATP 1102 D 1 
HETATM 30 N N3 ATP . . . N 3 193.151 134.719 123.759 1 115.49 ? N3 ATP 1102 D 1 
HETATM 31 C C4 ATP . . . N 3 192.701 135.792 123.043 1 108.32 ? C4 ATP 1102 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#