data_8SWK
#
_model_server_result.job_id            heVGMf0flwrt4QfXa9K5Gw 
_model_server_result.datetime_utc      '2024-10-19 03:57:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8swk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1102}' 
#
_entry.id    8SWK 
#
_exptl.entry_id    8SWK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SWK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 123 n n 
PG O2G ATP sing 124 n n 
PG O3G ATP sing 125 n n 
PG O3B ATP sing 126 n n 
O2G HOG2 ATP sing 127 n n 
O3G HOG3 ATP sing 128 n n 
PB O1B ATP doub 129 n n 
PB O2B ATP sing 130 n n 
PB O3B ATP sing 131 n n 
PB O3A ATP sing 132 n n 
O2B HOB2 ATP sing 133 n n 
PA O1A ATP doub 134 n n 
PA O2A ATP sing 135 n n 
PA O3A ATP sing 136 n n 
PA O5' ATP sing 137 n n 
O2A HOA2 ATP sing 138 n n 
O5' C5' ATP sing 139 n n 
C5' C4' ATP sing 140 n n 
C5' "H5'1" ATP sing 141 n n 
C5' "H5'2" ATP sing 142 n n 
C4' O4' ATP sing 143 n n 
C4' C3' ATP sing 144 n n 
C4' H4' ATP sing 145 n n 
O4' C1' ATP sing 146 n n 
C3' O3' ATP sing 147 n n 
C3' C2' ATP sing 148 n n 
C3' H3' ATP sing 149 n n 
O3' HO3' ATP sing 150 n n 
C2' O2' ATP sing 151 n n 
C2' C1' ATP sing 152 n n 
C2' H2' ATP sing 153 n n 
O2' HO2' ATP sing 154 n n 
C1' N9 ATP sing 155 n n 
C1' H1' ATP sing 156 n n 
N9 C8 ATP sing 157 n y 
N9 C4 ATP sing 158 n y 
C8 N7 ATP doub 159 n y 
C8 H8 ATP sing 160 n n 
N7 C5 ATP sing 161 n y 
C5 C6 ATP sing 162 n y 
C5 C4 ATP doub 163 n y 
C6 N6 ATP sing 164 n n 
C6 N1 ATP doub 165 n y 
N6 HN61 ATP sing 166 n n 
N6 HN62 ATP sing 167 n n 
N1 C2 ATP sing 168 n y 
C2 N3 ATP doub 169 n y 
C2 H2 ATP sing 170 n n 
N3 C4 ATP sing 171 n y 
#
_atom_sites.entry_id                     8SWK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 7YN A 1 1101 1101 7YN LIG . 
H 3 ATP A 1 1102 1201 ATP ATP . 
I 2 7YN B 1 1101 1101 7YN LIG . 
J 3 ATP B 1 1102 1201 ATP ATP . 
K 2 7YN C 1 1101 1101 7YN LIG . 
L 3 ATP C 1 1102 1201 ATP ATP . 
M 2 7YN D 1 1101 1101 7YN LIG . 
N 3 ATP D 1 1102 1201 ATP ATP . 
O 2 7YN E 1 1101 1101 7YN LIG . 
P 3 ATP E 1 1102 1201 ATP ATP . 
Q 2 7YN F 1 1101 1101 7YN LIG . 
R 3 ATP F 1 1102 1201 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 3 121.559 121.308 113.088 1 129.9 ? PG ATP 1102 E 1 
HETATM 2 O O1G ATP . . . P 3 122.407 120.251 112.508 1 128.12 ? O1G ATP 1102 E 1 
HETATM 3 O O2G ATP . . . P 3 122.37 122.075 114.249 1 125.42 -1 O2G ATP 1102 E 1 
HETATM 4 O O3G ATP . . . P 3 121.216 122.381 111.956 1 139.23 ? O3G ATP 1102 E 1 
HETATM 5 P PB ATP . . . P 3 120.38 119.932 115.039 1 106.34 ? PB ATP 1102 E 1 
HETATM 6 O O1B ATP . . . P 3 121.508 118.976 114.958 1 110.74 -1 O1B ATP 1102 E 1 
HETATM 7 O O2B ATP . . . P 3 120.735 121.025 116.165 1 106.12 ? O2B ATP 1102 E 1 
HETATM 8 O O3B ATP . . . P 3 120.169 120.68 113.627 1 121.55 ? O3B ATP 1102 E 1 
HETATM 9 P PA ATP . . . P 3 117.915 119.98 116.101 1 115.97 ? PA ATP 1102 E 1 
HETATM 10 O O1A ATP . . . P 3 117.392 120.965 115.133 1 127.43 -1 O1A ATP 1102 E 1 
HETATM 11 O O2A ATP . . . P 3 118.498 120.732 117.39 1 109.46 ? O2A ATP 1102 E 1 
HETATM 12 O O3A ATP . . . P 3 119.059 119.072 115.417 1 113.81 ? O3A ATP 1102 E 1 
HETATM 13 O O5' ATP . . . P 3 116.715 119.009 116.606 1 117.41 ? O5' ATP 1102 E 1 
HETATM 14 C C5' ATP . . . P 3 115.659 119.686 117.348 1 121.38 ? C5' ATP 1102 E 1 
HETATM 15 C C4' ATP . . . P 3 115.197 118.751 118.481 1 107.9 ? C4' ATP 1102 E 1 
HETATM 16 O O4' ATP . . . P 3 116.258 118.673 119.477 1 101.99 ? O4' ATP 1102 E 1 
HETATM 17 C C3' ATP . . . P 3 113.938 119.297 119.223 1 121.61 ? C3' ATP 1102 E 1 
HETATM 18 O O3' ATP . . . P 3 112.895 118.321 119.27 1 124.05 ? O3' ATP 1102 E 1 
HETATM 19 C C2' ATP . . . P 3 114.441 119.567 120.654 1 118.41 ? C2' ATP 1102 E 1 
HETATM 20 O O2' ATP . . . P 3 113.444 119.253 121.632 1 127.01 ? O2' ATP 1102 E 1 
HETATM 21 C C1' ATP . . . P 3 115.638 118.605 120.786 1 103.07 ? C1' ATP 1102 E 1 
HETATM 22 N N9 ATP . . . P 3 116.565 119.047 121.855 1 105.86 ? N9 ATP 1102 E 1 
HETATM 23 C C8 ATP . . . P 3 117.921 119.189 121.729 1 111.6 ? C8 ATP 1102 E 1 
HETATM 24 N N7 ATP . . . P 3 118.43 119.751 122.787 1 114.63 ? N7 ATP 1102 E 1 
HETATM 25 C C5 ATP . . . P 3 117.446 119.996 123.679 1 112.46 ? C5 ATP 1102 E 1 
HETATM 26 C C6 ATP . . . P 3 117.399 120.59 124.974 1 132 ? C6 ATP 1102 E 1 
HETATM 27 N N6 ATP . . . P 3 118.563 121.034 125.56 1 138.94 ? N6 ATP 1102 E 1 
HETATM 28 N N1 ATP . . . P 3 116.206 120.682 125.613 1 138.01 ? N1 ATP 1102 E 1 
HETATM 29 C C2 ATP . . . P 3 115.067 120.25 125.03 1 131.88 ? C2 ATP 1102 E 1 
HETATM 30 N N3 ATP . . . P 3 115.064 119.689 123.807 1 114.68 ? N3 ATP 1102 E 1 
HETATM 31 C C4 ATP . . . P 3 116.223 119.553 123.094 1 108.37 ? C4 ATP 1102 E 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#