data_8SWU # _model_server_result.job_id QDnHw5rns447r_XMGx8QBw _model_server_result.datetime_utc '2025-08-27 09:27:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8swu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8SWU # _exptl.entry_id 8SWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.7 _cell.angle_gamma 90 _cell.entry_id 8SWU _cell.length_a 72.433 _cell.length_b 91.824 _cell.length_c 78.409 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id IMH _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Forodesine;Immucillin H' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' IMH sing 173 n n O5' "HO'5" IMH sing 174 n n C5' C4' IMH sing 175 n n C5' "H5'1" IMH sing 176 n n C5' "H5'2" IMH sing 177 n n C4' N4' IMH sing 178 n n C4' C3' IMH sing 179 n n C4' H4' IMH sing 180 n n N4' C1' IMH sing 181 n n N4' "HN'4" IMH sing 182 n n C3' O3' IMH sing 183 n n C3' C2' IMH sing 184 n n C3' H3' IMH sing 185 n n O3' "HO'3" IMH sing 186 n n C2' O2' IMH sing 187 n n C2' C1' IMH sing 188 n n C2' H2' IMH sing 189 n n O2' "HO'2" IMH sing 190 n n C1' C9 IMH sing 191 n n C1' H1' IMH sing 192 n n C9 C8 IMH doub 193 n y C9 C4 IMH sing 194 n y C8 N7 IMH sing 195 n y C8 H8 IMH sing 196 n n N7 C5 IMH sing 197 n y N7 HN7 IMH sing 198 n n C5 C6 IMH sing 199 n n C5 C4 IMH doub 200 n y C6 O6 IMH doub 201 n n C6 N1 IMH sing 202 n n N1 C2 IMH sing 203 n n C2 N3 IMH doub 204 n n C2 H2 IMH sing 205 n n N3 C4 IMH sing 206 n n N1 H1 IMH sing 207 n n # _atom_sites.entry_id 8SWU _atom_sites.fract_transf_matrix[1][1] 0.013806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005776 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IMH A 1 301 301 IMH IMH . E 3 SO4 A 1 302 401 SO4 SO4 . F 2 IMH B 1 301 301 IMH IMH . G 3 SO4 B 1 302 401 SO4 SO4 . H 2 IMH C 1 301 301 IMH IMH . I 3 SO4 C 1 302 401 SO4 SO4 . J 4 HOH A 1 401 23 HOH HOH . J 4 HOH A 2 402 5 HOH HOH . J 4 HOH A 3 403 26 HOH HOH . J 4 HOH A 4 404 11 HOH HOH . J 4 HOH A 5 405 18 HOH HOH . J 4 HOH A 6 406 9 HOH HOH . J 4 HOH A 7 407 19 HOH HOH . J 4 HOH A 8 408 25 HOH HOH . J 4 HOH A 9 409 1 HOH HOH . J 4 HOH A 10 410 4 HOH HOH . J 4 HOH A 11 411 24 HOH HOH . J 4 HOH A 12 412 2 HOH HOH . J 4 HOH A 13 413 35 HOH HOH . J 4 HOH A 14 414 32 HOH HOH . J 4 HOH A 15 415 27 HOH HOH . J 4 HOH A 16 416 21 HOH HOH . J 4 HOH A 17 417 28 HOH HOH . J 4 HOH A 18 418 33 HOH HOH . J 4 HOH A 19 419 20 HOH HOH . J 4 HOH A 20 420 37 HOH HOH . K 4 HOH B 1 401 14 HOH HOH . K 4 HOH B 2 402 12 HOH HOH . K 4 HOH B 3 403 15 HOH HOH . K 4 HOH B 4 404 6 HOH HOH . K 4 HOH B 5 405 7 HOH HOH . K 4 HOH B 6 406 34 HOH HOH . K 4 HOH B 7 407 10 HOH HOH . K 4 HOH B 8 408 36 HOH HOH . K 4 HOH B 9 409 17 HOH HOH . K 4 HOH B 10 410 38 HOH HOH . K 4 HOH B 11 411 8 HOH HOH . L 4 HOH C 1 401 31 HOH HOH . L 4 HOH C 2 402 16 HOH HOH . L 4 HOH C 3 403 29 HOH HOH . L 4 HOH C 4 404 30 HOH HOH . L 4 HOH C 5 405 3 HOH HOH . L 4 HOH C 6 406 22 HOH HOH . L 4 HOH C 7 407 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' IMH . . . F 2 8.762 0.03 1.554 1 35.96 ? O5' IMH 301 B 1 HETATM 2 C C5' IMH . . . F 2 8.627 0.442 2.917 1 38.35 ? C5' IMH 301 B 1 HETATM 3 C C4' IMH . . . F 2 7.59 -0.454 3.599 1 34.13 ? C4' IMH 301 B 1 HETATM 4 N N4' IMH . . . F 2 7.562 -1.652 3.042 1 38.22 ? N4' IMH 301 B 1 HETATM 5 C C3' IMH . . . F 2 8.029 -0.718 5.152 1 34.35 ? C3' IMH 301 B 1 HETATM 6 O O3' IMH . . . F 2 6.883 -1.151 5.914 1 41.77 ? O3' IMH 301 B 1 HETATM 7 C C2' IMH . . . F 2 8.969 -1.67 5.097 1 32.84 ? C2' IMH 301 B 1 HETATM 8 O O2' IMH . . . F 2 8.942 -2.522 6.317 1 35 ? O2' IMH 301 B 1 HETATM 9 C C1' IMH . . . F 2 8.607 -2.525 3.848 1 35.55 ? C1' IMH 301 B 1 HETATM 10 C C9 IMH . . . F 2 9.746 -2.8 3.034 1 35.19 ? C9 IMH 301 B 1 HETATM 11 C C8 IMH . . . F 2 9.709 -3.274 1.719 1 36.48 ? C8 IMH 301 B 1 HETATM 12 N N7 IMH . . . F 2 10.96 -3.419 1.264 1 33.21 ? N7 IMH 301 B 1 HETATM 13 C C5 IMH . . . F 2 11.837 -3.061 2.221 1 36.32 ? C5 IMH 301 B 1 HETATM 14 C C6 IMH . . . F 2 13.245 -3.02 2.272 1 32.74 ? C6 IMH 301 B 1 HETATM 15 O O6 IMH . . . F 2 14.002 -3.413 1.145 1 28.17 ? O6 IMH 301 B 1 HETATM 16 N N1 IMH . . . F 2 13.857 -2.614 3.375 1 29.65 ? N1 IMH 301 B 1 HETATM 17 C C2 IMH . . . F 2 13.137 -2.236 4.456 1 29.67 ? C2 IMH 301 B 1 HETATM 18 N N3 IMH . . . F 2 11.825 -2.258 4.452 1 33.85 ? N3 IMH 301 B 1 HETATM 19 C C4 IMH . . . F 2 11.131 -2.662 3.359 1 35.07 ? C4 IMH 301 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #