data_8SWY # _model_server_result.job_id hoiGjnost22ZJGd2Vhjx3w _model_server_result.datetime_utc '2024-12-15 02:43:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8swy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 8SWY # _exptl.entry_id 8SWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SWY _cell.length_a 116.904 _cell.length_b 151.699 _cell.length_c 104.601 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,J 1 1 B,G,H,I,K 2 1 C,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 250 n n PA O2A NAI sing 251 n n PA O5B NAI sing 252 n n PA O3 NAI sing 253 n n O2A HOA2 NAI sing 254 n n O5B C5B NAI sing 255 n n C5B C4B NAI sing 256 n n C5B H51A NAI sing 257 n n C5B H52A NAI sing 258 n n C4B O4B NAI sing 259 n n C4B C3B NAI sing 260 n n C4B H4B NAI sing 261 n n O4B C1B NAI sing 262 n n C3B O3B NAI sing 263 n n C3B C2B NAI sing 264 n n C3B H3B NAI sing 265 n n O3B HO3A NAI sing 266 n n C2B O2B NAI sing 267 n n C2B C1B NAI sing 268 n n C2B H2B NAI sing 269 n n O2B HO2A NAI sing 270 n n C1B N9A NAI sing 271 n n C1B H1B NAI sing 272 n n N9A C8A NAI sing 273 n y N9A C4A NAI sing 274 n y C8A N7A NAI doub 275 n y C8A H8A NAI sing 276 n n N7A C5A NAI sing 277 n y C5A C6A NAI sing 278 n y C5A C4A NAI doub 279 n y C6A N6A NAI sing 280 n n C6A N1A NAI doub 281 n y N6A H61A NAI sing 282 n n N6A H62A NAI sing 283 n n N1A C2A NAI sing 284 n y C2A N3A NAI doub 285 n y C2A H2A NAI sing 286 n n N3A C4A NAI sing 287 n y O3 PN NAI sing 288 n n PN O1N NAI sing 289 n n PN O2N NAI doub 290 n n PN O5D NAI sing 291 n n O1N HO1N NAI sing 292 n n O5D C5D NAI sing 293 n n C5D C4D NAI sing 294 n n C5D H51N NAI sing 295 n n C5D H52N NAI sing 296 n n C4D O4D NAI sing 297 n n C4D C3D NAI sing 298 n n C4D H4D NAI sing 299 n n O4D C1D NAI sing 300 n n C3D O3D NAI sing 301 n n C3D C2D NAI sing 302 n n C3D H3D NAI sing 303 n n O3D HO3N NAI sing 304 n n C2D O2D NAI sing 305 n n C2D C1D NAI sing 306 n n C2D H2D NAI sing 307 n n O2D HO2N NAI sing 308 n n C1D N1N NAI sing 309 n n C1D H1D NAI sing 310 n n N1N C2N NAI sing 311 n n N1N C6N NAI sing 312 n n C2N C3N NAI doub 313 n n C2N H2N NAI sing 314 n n C3N C7N NAI sing 315 n n C3N C4N NAI sing 316 n n C7N O7N NAI doub 317 n n C7N N7N NAI sing 318 n n N7N H71N NAI sing 319 n n N7N H72N NAI sing 320 n n C4N C5N NAI sing 321 n n C4N H4N NAI sing 322 n n C4N H42N NAI sing 323 n n C5N C6N NAI doub 324 n n C5N H5N NAI sing 325 n n C6N H6N NAI sing 326 n n # _atom_sites.entry_id 8SWY _atom_sites.fract_transf_matrix[1][1] 0.008554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAI A 1 1001 1001 NAI NAI . E 3 GOL A 1 1002 1002 GOL GOL . F 3 GOL A 1 1003 1004 GOL GOL . G 3 GOL B 1 601 1003 GOL GOL . H 2 NAI B 1 602 1001 NAI NAI . I 3 GOL B 1 603 1002 GOL GOL . J 4 HOH A 1 1101 3 HOH HOH . J 4 HOH A 2 1102 9 HOH HOH . J 4 HOH A 3 1103 50 HOH HOH . J 4 HOH A 4 1104 6 HOH HOH . J 4 HOH A 5 1105 20 HOH HOH . J 4 HOH A 6 1106 2 HOH HOH . J 4 HOH A 7 1107 30 HOH HOH . J 4 HOH A 8 1108 14 HOH HOH . J 4 HOH A 9 1109 7 HOH HOH . J 4 HOH A 10 1110 28 HOH HOH . J 4 HOH A 11 1111 25 HOH HOH . J 4 HOH A 12 1112 5 HOH HOH . J 4 HOH A 13 1113 13 HOH HOH . J 4 HOH A 14 1114 19 HOH HOH . J 4 HOH A 15 1115 40 HOH HOH . J 4 HOH A 16 1116 57 HOH HOH . J 4 HOH A 17 1117 56 HOH HOH . J 4 HOH A 18 1118 27 HOH HOH . J 4 HOH A 19 1119 47 HOH HOH . J 4 HOH A 20 1120 48 HOH HOH . J 4 HOH A 21 1121 55 HOH HOH . J 4 HOH A 22 1122 49 HOH HOH . K 4 HOH B 1 701 33 HOH HOH . K 4 HOH B 2 702 34 HOH HOH . K 4 HOH B 3 703 60 HOH HOH . K 4 HOH B 4 704 18 HOH HOH . K 4 HOH B 5 705 52 HOH HOH . K 4 HOH B 6 706 21 HOH HOH . K 4 HOH B 7 707 26 HOH HOH . K 4 HOH B 8 708 31 HOH HOH . K 4 HOH B 9 709 45 HOH HOH . K 4 HOH B 10 710 29 HOH HOH . K 4 HOH B 11 711 16 HOH HOH . K 4 HOH B 12 712 23 HOH HOH . K 4 HOH B 13 713 11 HOH HOH . K 4 HOH B 14 714 61 HOH HOH . K 4 HOH B 15 715 46 HOH HOH . K 4 HOH B 16 716 4 HOH HOH . K 4 HOH B 17 717 59 HOH HOH . K 4 HOH B 18 718 63 HOH HOH . K 4 HOH B 19 719 53 HOH HOH . K 4 HOH B 20 720 43 HOH HOH . K 4 HOH B 21 721 44 HOH HOH . K 4 HOH B 22 722 58 HOH HOH . L 4 HOH C 1 601 15 HOH HOH . L 4 HOH C 2 602 17 HOH HOH . L 4 HOH C 3 603 10 HOH HOH . L 4 HOH C 4 604 8 HOH HOH . L 4 HOH C 5 605 51 HOH HOH . L 4 HOH C 6 606 22 HOH HOH . L 4 HOH C 7 607 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . D 2 10.382 -8.018 22.467 0.75 104.9 ? PA NAI 1001 A 1 HETATM 2 O O1A NAI . . . D 2 9.401 -7.047 21.905 0.75 94.91 ? O1A NAI 1001 A 1 HETATM 3 O O2A NAI . . . D 2 11.415 -8.62 21.498 0.75 102.1 ? O2A NAI 1001 A 1 HETATM 4 O O5B NAI . . . D 2 9.647 -9.2 23.271 0.75 91.34 ? O5B NAI 1001 A 1 HETATM 5 C C5B NAI . . . D 2 10.333 -10.427 23.598 0.75 84.8 ? C5B NAI 1001 A 1 HETATM 6 C C4B NAI . . . D 2 9.847 -10.902 24.947 0.75 89.22 ? C4B NAI 1001 A 1 HETATM 7 O O4B NAI . . . D 2 10.177 -12.296 25.107 0.75 89.98 ? O4B NAI 1001 A 1 HETATM 8 C C3B NAI . . . D 2 10.422 -10.155 26.159 0.75 96.96 ? C3B NAI 1001 A 1 HETATM 9 O O3B NAI . . . D 2 9.398 -9.564 26.957 0.75 98.23 ? O3B NAI 1001 A 1 HETATM 10 C C2B NAI . . . D 2 11.201 -11.227 26.942 0.75 88.1 ? C2B NAI 1001 A 1 HETATM 11 O O2B NAI . . . D 2 10.924 -11.074 28.334 0.75 71.4 ? O2B NAI 1001 A 1 HETATM 12 C C1B NAI . . . D 2 10.583 -12.533 26.438 0.75 92.25 ? C1B NAI 1001 A 1 HETATM 13 N N9A NAI . . . D 2 11.482 -13.687 26.447 0.75 83.14 ? N9A NAI 1001 A 1 HETATM 14 C C8A NAI . . . D 2 12.808 -13.723 26.086 0.75 80.6 ? C8A NAI 1001 A 1 HETATM 15 N N7A NAI . . . D 2 13.353 -14.914 26.167 0.75 78.01 ? N7A NAI 1001 A 1 HETATM 16 C C5A NAI . . . D 2 12.315 -15.722 26.615 0.75 84.5 ? C5A NAI 1001 A 1 HETATM 17 C C6A NAI . . . D 2 12.237 -17.099 26.919 0.75 84.89 ? C6A NAI 1001 A 1 HETATM 18 N N6A NAI . . . D 2 13.269 -17.941 26.823 0.75 86.6 ? N6A NAI 1001 A 1 HETATM 19 N N1A NAI . . . D 2 11.042 -17.592 27.334 0.75 75.15 ? N1A NAI 1001 A 1 HETATM 20 C C2A NAI . . . D 2 10.01 -16.752 27.458 0.75 77.61 ? C2A NAI 1001 A 1 HETATM 21 N N3A NAI . . . D 2 9.964 -15.441 27.196 0.75 84.93 ? N3A NAI 1001 A 1 HETATM 22 C C4A NAI . . . D 2 11.153 -14.981 26.778 0.75 84.55 ? C4A NAI 1001 A 1 HETATM 23 O O3 NAI . . . D 2 11.204 -7.3 23.626 0.75 102.51 ? O3 NAI 1001 A 1 HETATM 24 P PN NAI . . . D 2 10.861 -6.52 24.968 0.75 83.23 ? PN NAI 1001 A 1 HETATM 25 O O1N NAI . . . D 2 12.107 -6.556 25.859 0.75 83.61 ? O1N NAI 1001 A 1 HETATM 26 O O2N NAI . . . D 2 9.65 -7.082 25.608 0.75 99.3 ? O2N NAI 1001 A 1 HETATM 27 O O5D NAI . . . D 2 10.546 -5.066 24.435 0.75 81.76 ? O5D NAI 1001 A 1 HETATM 28 C C5D NAI . . . D 2 11.432 -4.378 23.528 0.75 81.93 ? C5D NAI 1001 A 1 HETATM 29 C C4D NAI . . . D 2 11.035 -2.927 23.596 0.75 83.87 ? C4D NAI 1001 A 1 HETATM 30 O O4D NAI . . . D 2 10.782 -2.574 24.977 0.75 87.87 ? O4D NAI 1001 A 1 HETATM 31 C C3D NAI . . . D 2 12.068 -1.937 23.053 0.75 81.6 ? C3D NAI 1001 A 1 HETATM 32 O O3D NAI . . . D 2 11.638 -1.415 21.803 0.75 75.01 ? O3D NAI 1001 A 1 HETATM 33 C C2D NAI . . . D 2 12.095 -0.807 24.096 0.75 91.78 ? C2D NAI 1001 A 1 HETATM 34 O O2D NAI . . . D 2 11.193 0.246 23.758 0.75 79.1 ? O2D NAI 1001 A 1 HETATM 35 C C1D NAI . . . D 2 11.621 -1.506 25.374 0.75 91.47 ? C1D NAI 1001 A 1 HETATM 36 N N1N NAI . . . D 2 12.701 -2.02 26.226 0.75 83.27 ? N1N NAI 1001 A 1 HETATM 37 C C2N NAI . . . D 2 12.541 -3.186 26.902 0.75 80.97 ? C2N NAI 1001 A 1 HETATM 38 C C3N NAI . . . D 2 13.13 -3.34 28.108 0.75 76.27 ? C3N NAI 1001 A 1 HETATM 39 C C7N NAI . . . D 2 12.836 -4.571 28.845 0.75 81.96 ? C7N NAI 1001 A 1 HETATM 40 O O7N NAI . . . D 2 12.957 -4.642 30.076 0.75 74.98 ? O7N NAI 1001 A 1 HETATM 41 N N7N NAI . . . D 2 12.432 -5.626 28.139 0.75 80.07 ? N7N NAI 1001 A 1 HETATM 42 C C4N NAI . . . D 2 14.167 -2.377 28.6 0.75 70.77 ? C4N NAI 1001 A 1 HETATM 43 C C5N NAI . . . D 2 14.414 -1.312 27.593 0.75 78.97 ? C5N NAI 1001 A 1 HETATM 44 C C6N NAI . . . D 2 13.837 -1.291 26.398 0.75 72.78 ? C6N NAI 1001 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #