data_8SWY
#
_model_server_result.job_id            rkkdo_iTiEoPfvRliV378A 
_model_server_result.datetime_utc      '2024-12-15 02:41:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8swy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":602}' 
#
_entry.id    8SWY 
#
_exptl.entry_id    8SWY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SWY 
_cell.length_a            116.904 
_cell.length_b            151.699 
_cell.length_c            104.601 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SWY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,J 1 1 
B,G,H,I,K 2 1 
C,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 250 n n 
PA O2A NAI sing 251 n n 
PA O5B NAI sing 252 n n 
PA O3 NAI sing 253 n n 
O2A HOA2 NAI sing 254 n n 
O5B C5B NAI sing 255 n n 
C5B C4B NAI sing 256 n n 
C5B H51A NAI sing 257 n n 
C5B H52A NAI sing 258 n n 
C4B O4B NAI sing 259 n n 
C4B C3B NAI sing 260 n n 
C4B H4B NAI sing 261 n n 
O4B C1B NAI sing 262 n n 
C3B O3B NAI sing 263 n n 
C3B C2B NAI sing 264 n n 
C3B H3B NAI sing 265 n n 
O3B HO3A NAI sing 266 n n 
C2B O2B NAI sing 267 n n 
C2B C1B NAI sing 268 n n 
C2B H2B NAI sing 269 n n 
O2B HO2A NAI sing 270 n n 
C1B N9A NAI sing 271 n n 
C1B H1B NAI sing 272 n n 
N9A C8A NAI sing 273 n y 
N9A C4A NAI sing 274 n y 
C8A N7A NAI doub 275 n y 
C8A H8A NAI sing 276 n n 
N7A C5A NAI sing 277 n y 
C5A C6A NAI sing 278 n y 
C5A C4A NAI doub 279 n y 
C6A N6A NAI sing 280 n n 
C6A N1A NAI doub 281 n y 
N6A H61A NAI sing 282 n n 
N6A H62A NAI sing 283 n n 
N1A C2A NAI sing 284 n y 
C2A N3A NAI doub 285 n y 
C2A H2A NAI sing 286 n n 
N3A C4A NAI sing 287 n y 
O3 PN NAI sing 288 n n 
PN O1N NAI sing 289 n n 
PN O2N NAI doub 290 n n 
PN O5D NAI sing 291 n n 
O1N HO1N NAI sing 292 n n 
O5D C5D NAI sing 293 n n 
C5D C4D NAI sing 294 n n 
C5D H51N NAI sing 295 n n 
C5D H52N NAI sing 296 n n 
C4D O4D NAI sing 297 n n 
C4D C3D NAI sing 298 n n 
C4D H4D NAI sing 299 n n 
O4D C1D NAI sing 300 n n 
C3D O3D NAI sing 301 n n 
C3D C2D NAI sing 302 n n 
C3D H3D NAI sing 303 n n 
O3D HO3N NAI sing 304 n n 
C2D O2D NAI sing 305 n n 
C2D C1D NAI sing 306 n n 
C2D H2D NAI sing 307 n n 
O2D HO2N NAI sing 308 n n 
C1D N1N NAI sing 309 n n 
C1D H1D NAI sing 310 n n 
N1N C2N NAI sing 311 n n 
N1N C6N NAI sing 312 n n 
C2N C3N NAI doub 313 n n 
C2N H2N NAI sing 314 n n 
C3N C7N NAI sing 315 n n 
C3N C4N NAI sing 316 n n 
C7N O7N NAI doub 317 n n 
C7N N7N NAI sing 318 n n 
N7N H71N NAI sing 319 n n 
N7N H72N NAI sing 320 n n 
C4N C5N NAI sing 321 n n 
C4N H4N NAI sing 322 n n 
C4N H42N NAI sing 323 n n 
C5N C6N NAI doub 324 n n 
C5N H5N NAI sing 325 n n 
C6N H6N NAI sing 326 n n 
#
_atom_sites.entry_id                     8SWY 
_atom_sites.fract_transf_matrix[1][1]    0.008554 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006592 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAI A 1 1001 1001 NAI NAI . 
E 3 GOL A 1 1002 1002 GOL GOL . 
F 3 GOL A 1 1003 1004 GOL GOL . 
G 3 GOL B 1 601 1003 GOL GOL . 
H 2 NAI B 1 602 1001 NAI NAI . 
I 3 GOL B 1 603 1002 GOL GOL . 
J 4 HOH A 1 1101 3 HOH HOH . 
J 4 HOH A 2 1102 9 HOH HOH . 
J 4 HOH A 3 1103 50 HOH HOH . 
J 4 HOH A 4 1104 6 HOH HOH . 
J 4 HOH A 5 1105 20 HOH HOH . 
J 4 HOH A 6 1106 2 HOH HOH . 
J 4 HOH A 7 1107 30 HOH HOH . 
J 4 HOH A 8 1108 14 HOH HOH . 
J 4 HOH A 9 1109 7 HOH HOH . 
J 4 HOH A 10 1110 28 HOH HOH . 
J 4 HOH A 11 1111 25 HOH HOH . 
J 4 HOH A 12 1112 5 HOH HOH . 
J 4 HOH A 13 1113 13 HOH HOH . 
J 4 HOH A 14 1114 19 HOH HOH . 
J 4 HOH A 15 1115 40 HOH HOH . 
J 4 HOH A 16 1116 57 HOH HOH . 
J 4 HOH A 17 1117 56 HOH HOH . 
J 4 HOH A 18 1118 27 HOH HOH . 
J 4 HOH A 19 1119 47 HOH HOH . 
J 4 HOH A 20 1120 48 HOH HOH . 
J 4 HOH A 21 1121 55 HOH HOH . 
J 4 HOH A 22 1122 49 HOH HOH . 
K 4 HOH B 1 701 33 HOH HOH . 
K 4 HOH B 2 702 34 HOH HOH . 
K 4 HOH B 3 703 60 HOH HOH . 
K 4 HOH B 4 704 18 HOH HOH . 
K 4 HOH B 5 705 52 HOH HOH . 
K 4 HOH B 6 706 21 HOH HOH . 
K 4 HOH B 7 707 26 HOH HOH . 
K 4 HOH B 8 708 31 HOH HOH . 
K 4 HOH B 9 709 45 HOH HOH . 
K 4 HOH B 10 710 29 HOH HOH . 
K 4 HOH B 11 711 16 HOH HOH . 
K 4 HOH B 12 712 23 HOH HOH . 
K 4 HOH B 13 713 11 HOH HOH . 
K 4 HOH B 14 714 61 HOH HOH . 
K 4 HOH B 15 715 46 HOH HOH . 
K 4 HOH B 16 716 4 HOH HOH . 
K 4 HOH B 17 717 59 HOH HOH . 
K 4 HOH B 18 718 63 HOH HOH . 
K 4 HOH B 19 719 53 HOH HOH . 
K 4 HOH B 20 720 43 HOH HOH . 
K 4 HOH B 21 721 44 HOH HOH . 
K 4 HOH B 22 722 58 HOH HOH . 
L 4 HOH C 1 601 15 HOH HOH . 
L 4 HOH C 2 602 17 HOH HOH . 
L 4 HOH C 3 603 10 HOH HOH . 
L 4 HOH C 4 604 8 HOH HOH . 
L 4 HOH C 5 605 51 HOH HOH . 
L 4 HOH C 6 606 22 HOH HOH . 
L 4 HOH C 7 607 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . H 2 40.758 16.475 1.052 0.75 103.24 ? PA NAI 602 B 1 
HETATM 2 O O1A NAI . . . H 2 40.674 15.528 -0.102 0.75 103.19 ? O1A NAI 602 B 1 
HETATM 3 O O2A NAI . . . H 2 39.426 16.712 1.797 0.75 84.73 ? O2A NAI 602 B 1 
HETATM 4 O O5B NAI . . . H 2 41.356 17.861 0.494 0.75 101.34 ? O5B NAI 602 B 1 
HETATM 5 C C5B NAI . . . H 2 41.651 18.968 1.372 0.75 88.12 ? C5B NAI 602 B 1 
HETATM 6 C C4B NAI . . . H 2 43.052 19.428 1.064 0.75 79.82 ? C4B NAI 602 B 1 
HETATM 7 O O4B NAI . . . H 2 43.181 20.835 1.389 0.75 86.6 ? O4B NAI 602 B 1 
HETATM 8 C C3B NAI . . . H 2 44.156 18.715 1.849 0.75 94.09 ? C3B NAI 602 B 1 
HETATM 9 O O3B NAI . . . H 2 45.321 18.614 1.032 0.75 88.64 ? O3B NAI 602 B 1 
HETATM 10 C C2B NAI . . . H 2 44.367 19.663 3.034 0.75 88.87 ? C2B NAI 602 B 1 
HETATM 11 O O2B NAI . . . H 2 45.639 19.582 3.67 0.75 75.11 ? O2B NAI 602 B 1 
HETATM 12 C C1B NAI . . . H 2 44.26 20.99 2.294 0.75 86.35 ? C1B NAI 602 B 1 
HETATM 13 N N9A NAI . . . H 2 44.028 22.145 3.138 0.75 74.25 ? N9A NAI 602 B 1 
HETATM 14 C C8A NAI . . . H 2 43.241 22.248 4.258 0.75 72.76 ? C8A NAI 602 B 1 
HETATM 15 N N7A NAI . . . H 2 43.25 23.44 4.805 0.75 74.11 ? N7A NAI 602 B 1 
HETATM 16 C C5A NAI . . . H 2 44.102 24.172 3.985 0.75 81.48 ? C5A NAI 602 B 1 
HETATM 17 C C6A NAI . . . H 2 44.552 25.507 4.022 0.75 78.47 ? C6A NAI 602 B 1 
HETATM 18 N N6A NAI . . . H 2 44.185 26.396 4.952 0.75 68.37 ? N6A NAI 602 B 1 
HETATM 19 N N1A NAI . . . H 2 45.412 25.908 3.047 0.75 83.24 ? N1A NAI 602 B 1 
HETATM 20 C C2A NAI . . . H 2 45.788 25.03 2.113 0.75 75.46 ? C2A NAI 602 B 1 
HETATM 21 N N3A NAI . . . H 2 45.438 23.75 1.989 0.75 74.02 ? N3A NAI 602 B 1 
HETATM 22 C C4A NAI . . . H 2 44.587 23.382 2.955 0.75 75.09 ? C4A NAI 602 B 1 
HETATM 23 O O3 NAI . . . H 2 41.849 16.044 2.131 0.75 90.24 ? O3 NAI 602 B 1 
HETATM 24 P PN NAI . . . H 2 42.992 14.939 2.243 0.75 87.55 ? PN NAI 602 B 1 
HETATM 25 O O1N NAI . . . H 2 43.409 14.798 3.709 0.75 87.59 ? O1N NAI 602 B 1 
HETATM 26 O O2N NAI . . . H 2 44.129 15.247 1.35 0.75 90.35 ? O2N NAI 602 B 1 
HETATM 27 O O5D NAI . . . H 2 42.169 13.664 1.821 0.75 74.93 ? O5D NAI 602 B 1 
HETATM 28 C C5D NAI . . . H 2 41.706 12.716 2.8 0.75 75.94 ? C5D NAI 602 B 1 
HETATM 29 C C4D NAI . . . H 2 41.78 11.358 2.155 0.75 88.34 ? C4D NAI 602 B 1 
HETATM 30 O O4D NAI . . . H 2 43.142 10.876 2.204 0.75 92.24 ? O4D NAI 602 B 1 
HETATM 31 C C3D NAI . . . H 2 40.887 10.299 2.804 0.75 84.91 ? C3D NAI 602 B 1 
HETATM 32 O O3D NAI . . . H 2 39.874 9.894 1.886 0.75 79.29 ? O3D NAI 602 B 1 
HETATM 33 C C2D NAI . . . H 2 41.845 9.148 3.146 0.75 95.27 ? C2D NAI 602 B 1 
HETATM 34 O O2D NAI . . . H 2 41.787 8.169 2.113 0.75 90.89 ? O2D NAI 602 B 1 
HETATM 35 C C1D NAI . . . H 2 43.226 9.81 3.119 0.75 98.81 ? C1D NAI 602 B 1 
HETATM 36 N N1N NAI . . . H 2 43.705 10.313 4.42 0.75 89.82 ? N1N NAI 602 B 1 
HETATM 37 C C2N NAI . . . H 2 44.452 11.446 4.483 0.75 80.11 ? C2N NAI 602 B 1 
HETATM 38 C C3N NAI . . . H 2 45.362 11.603 5.469 0.75 79.77 ? C3N NAI 602 B 1 
HETATM 39 C C7N NAI . . . H 2 46.161 12.826 5.442 0.75 76.71 ? C7N NAI 602 B 1 
HETATM 40 O O7N NAI . . . H 2 45.865 13.776 4.708 0.75 72.55 ? O7N NAI 602 B 1 
HETATM 41 N N7N NAI . . . H 2 47.216 12.884 6.249 0.75 71.29 ? N7N NAI 602 B 1 
HETATM 42 C C4N NAI . . . H 2 45.376 10.707 6.671 0.75 77.16 ? C4N NAI 602 B 1 
HETATM 43 C C5N NAI . . . H 2 44.327 9.66 6.555 0.75 78.68 ? C5N NAI 602 B 1 
HETATM 44 C C6N NAI . . . H 2 43.455 9.607 5.557 0.75 76.97 ? C6N NAI 602 B 1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#