data_8SWZ
#
_model_server_result.job_id            fvD7PXzuOlJPAiP6IV9_rQ 
_model_server_result.datetime_utc      '2024-11-25 12:56:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8swz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":602}' 
#
_entry.id    8SWZ 
#
_exptl.entry_id    8SWZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              537.528 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SWZ 
_cell.length_a            116.848 
_cell.length_b            150.859 
_cell.length_c            104.613 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SWZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,H 1 1 
B,F,G,I 2 1 
C,J 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C24 H27 N9 O6' 
_chem_comp.formula_weight    537.528 
_chem_comp.id                UHB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 UHB doub 371 n y 
C01 C06 UHB sing 372 n y 
C02 C03 UHB sing 373 n y 
C03 C04 UHB doub 374 n y 
C04 C05 UHB sing 375 n y 
C04 N11 UHB sing 376 n n 
C05 C06 UHB doub 377 n y 
C05 C08 UHB sing 378 n n 
C06 C07 UHB sing 379 n n 
C07 N09 UHB sing 380 n n 
C07 O10 UHB doub 381 n n 
C08 N09 UHB sing 382 n n 
N11 C12 UHB sing 383 n n 
C12 O13 UHB doub 384 n n 
C12 C14 UHB sing 385 n n 
C14 N15 UHB sing 386 n n 
N15 C16 UHB sing 387 n n 
N15 C20 UHB sing 388 n n 
C16 C17 UHB sing 389 n n 
C17 N18 UHB sing 390 n n 
N18 C19 UHB sing 391 n n 
N18 C21 UHB sing 392 n n 
C19 C20 UHB sing 393 n n 
C21 C22 UHB sing 394 n n 
C21 O27 UHB doub 395 n n 
C22 C23 UHB sing 396 n n 
C22 O26 UHB sing 397 n n 
C23 C24 UHB sing 398 n n 
C23 O28 UHB sing 399 n n 
C24 C25 UHB sing 400 n n 
C24 O29 UHB sing 401 n n 
C25 O26 UHB sing 402 n n 
C25 N30 UHB sing 403 n n 
N30 C32 UHB sing 404 n y 
N30 C33 UHB sing 405 n y 
C31 C32 UHB doub 406 n y 
C31 N34 UHB sing 407 n y 
C31 C38 UHB sing 408 n y 
C32 N37 UHB sing 409 n y 
C33 N34 UHB doub 410 n y 
N35 C36 UHB sing 411 n y 
N35 C38 UHB doub 412 n y 
C36 N37 UHB doub 413 n y 
C38 N39 UHB sing 414 n n 
C01 H01 UHB sing 415 n n 
C02 H02 UHB sing 416 n n 
C03 H03 UHB sing 417 n n 
C08 H081 UHB sing 418 n n 
C08 H082 UHB sing 419 n n 
N09 HN09 UHB sing 420 n n 
C14 H14 UHB sing 421 n n 
C14 H14A UHB sing 422 n n 
C16 H16 UHB sing 423 n n 
C16 H16A UHB sing 424 n n 
C17 H17 UHB sing 425 n n 
C17 H17A UHB sing 426 n n 
C19 H19 UHB sing 427 n n 
C19 H19A UHB sing 428 n n 
C20 H20 UHB sing 429 n n 
C20 H20A UHB sing 430 n n 
C22 H22 UHB sing 431 n n 
C23 H23 UHB sing 432 n n 
C24 H24 UHB sing 433 n n 
C25 H25 UHB sing 434 n n 
O28 HO28 UHB sing 435 n n 
O29 HO29 UHB sing 436 n n 
C33 H33 UHB sing 437 n n 
C36 H36 UHB sing 438 n n 
N39 HN39 UHB sing 439 n n 
N39 HN3A UHB sing 440 n n 
N11 HN11 UHB sing 441 n n 
#
_atom_sites.entry_id                     8SWZ 
_atom_sites.fract_transf_matrix[1][1]    0.008558 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 601 602 GOL GOL . 
E 3 UHB A 1 602 603 UHB UHB . 
F 2 GOL B 1 601 602 GOL GOL . 
G 3 UHB B 1 602 603 UHB UHB . 
H 4 HOH A 1 701 17 HOH HOH . 
H 4 HOH A 2 702 40 HOH HOH . 
H 4 HOH A 3 703 7 HOH HOH . 
H 4 HOH A 4 704 12 HOH HOH . 
H 4 HOH A 5 705 31 HOH HOH . 
H 4 HOH A 6 706 16 HOH HOH . 
H 4 HOH A 7 707 21 HOH HOH . 
H 4 HOH A 8 708 8 HOH HOH . 
H 4 HOH A 9 709 35 HOH HOH . 
H 4 HOH A 10 710 19 HOH HOH . 
H 4 HOH A 11 711 15 HOH HOH . 
H 4 HOH A 12 712 25 HOH HOH . 
H 4 HOH A 13 713 11 HOH HOH . 
H 4 HOH A 14 714 24 HOH HOH . 
H 4 HOH A 15 715 4 HOH HOH . 
H 4 HOH A 16 716 36 HOH HOH . 
H 4 HOH A 17 717 30 HOH HOH . 
H 4 HOH A 18 718 37 HOH HOH . 
I 4 HOH B 1 701 20 HOH HOH . 
I 4 HOH B 2 702 18 HOH HOH . 
I 4 HOH B 3 703 33 HOH HOH . 
I 4 HOH B 4 704 3 HOH HOH . 
I 4 HOH B 5 705 2 HOH HOH . 
I 4 HOH B 6 706 1 HOH HOH . 
I 4 HOH B 7 707 38 HOH HOH . 
I 4 HOH B 8 708 26 HOH HOH . 
I 4 HOH B 9 709 27 HOH HOH . 
I 4 HOH B 10 710 28 HOH HOH . 
J 4 HOH C 1 601 29 HOH HOH . 
J 4 HOH C 2 602 22 HOH HOH . 
J 4 HOH C 3 603 13 HOH HOH . 
J 4 HOH C 4 604 14 HOH HOH . 
J 4 HOH C 5 605 41 HOH HOH . 
J 4 HOH C 6 606 23 HOH HOH . 
J 4 HOH C 7 607 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 UHB . . . G 3 45.176 10.213 5.747 0.97 76.81 ? C01 UHB 602 B 1 
HETATM 2 C C02 UHB . . . G 3 43.963 9.824 5.211 0.97 80.17 ? C02 UHB 602 B 1 
HETATM 3 C C03 UHB . . . G 3 43.205 10.691 4.425 0.97 82.8 ? C03 UHB 602 B 1 
HETATM 4 C C04 UHB . . . G 3 43.644 11.974 4.153 0.97 83.31 ? C04 UHB 602 B 1 
HETATM 5 C C05 UHB . . . G 3 44.865 12.372 4.689 0.97 79.27 ? C05 UHB 602 B 1 
HETATM 6 C C06 UHB . . . G 3 45.603 11.5 5.464 0.97 77.8 ? C06 UHB 602 B 1 
HETATM 7 C C07 UHB . . . G 3 46.829 12.203 5.886 0.97 80.16 ? C07 UHB 602 B 1 
HETATM 8 C C08 UHB . . . G 3 45.592 13.677 4.574 0.97 80.41 ? C08 UHB 602 B 1 
HETATM 9 N N09 UHB . . . G 3 46.611 13.506 5.588 0.97 80.64 ? N09 UHB 602 B 1 
HETATM 10 O O10 UHB . . . G 3 47.842 11.729 6.403 0.97 84.26 ? O10 UHB 602 B 1 
HETATM 11 N N11 UHB . . . G 3 42.879 12.856 3.357 0.97 83.77 ? N11 UHB 602 B 1 
HETATM 12 C C12 UHB . . . G 3 41.786 12.542 2.629 0.97 91.03 ? C12 UHB 602 B 1 
HETATM 13 O O13 UHB . . . G 3 41.726 11.587 1.875 0.97 101.87 ? O13 UHB 602 B 1 
HETATM 14 C C14 UHB . . . G 3 40.603 13.469 2.83 0.97 90.81 ? C14 UHB 602 B 1 
HETATM 15 N N15 UHB . . . G 3 40.107 14.112 1.622 0.97 106.14 ? N15 UHB 602 B 1 
HETATM 16 C C16 UHB . . . G 3 39.293 15.282 1.963 0.97 109.82 ? C16 UHB 602 B 1 
HETATM 17 C C17 UHB . . . G 3 39.75 16.537 1.253 0.97 108.33 ? C17 UHB 602 B 1 
HETATM 18 N N18 UHB . . . G 3 41.167 16.786 1.51 0.97 89.48 ? N18 UHB 602 B 1 
HETATM 19 C C19 UHB . . . G 3 42.007 15.62 1.258 0.97 81 ? C19 UHB 602 B 1 
HETATM 20 C C20 UHB . . . G 3 41.179 14.489 0.697 0.97 90.94 ? C20 UHB 602 B 1 
HETATM 21 C C21 UHB . . . G 3 41.641 17.962 1.943 0.97 87.48 ? C21 UHB 602 B 1 
HETATM 22 C C22 UHB . . . G 3 42.979 18.428 1.456 0.97 80.25 ? C22 UHB 602 B 1 
HETATM 23 C C23 UHB . . . G 3 44.145 17.798 2.239 0.97 86.29 ? C23 UHB 602 B 1 
HETATM 24 C C24 UHB . . . G 3 44.722 18.908 3.143 0.97 81.76 ? C24 UHB 602 B 1 
HETATM 25 C C25 UHB . . . G 3 44.374 20.127 2.297 0.97 81.62 ? C25 UHB 602 B 1 
HETATM 26 O O26 UHB . . . G 3 43.122 19.831 1.671 0.97 82.91 ? O26 UHB 602 B 1 
HETATM 27 O O27 UHB . . . G 3 41.007 18.664 2.726 0.97 95.91 ? O27 UHB 602 B 1 
HETATM 28 O O28 UHB . . . G 3 44.761 16.583 1.82 0.97 88.62 ? O28 UHB 602 B 1 
HETATM 29 O O29 UHB . . . G 3 46.11 18.786 3.347 0.97 87.01 ? O29 UHB 602 B 1 
HETATM 30 N N30 UHB . . . G 3 44.235 21.35 3.076 0.97 77.56 ? N30 UHB 602 B 1 
HETATM 31 C C31 UHB . . . G 3 44.438 23.381 3.885 0.97 79.39 ? C31 UHB 602 B 1 
HETATM 32 C C32 UHB . . . G 3 44.904 22.536 2.899 0.97 77.67 ? C32 UHB 602 B 1 
HETATM 33 C C33 UHB . . . G 3 43.413 21.536 4.155 0.97 78.62 ? C33 UHB 602 B 1 
HETATM 34 N N34 UHB . . . G 3 43.499 22.734 4.671 0.97 81.46 ? N34 UHB 602 B 1 
HETATM 35 N N35 UHB . . . G 3 45.89 25.01 2.999 0.97 79.06 ? N35 UHB 602 B 1 
HETATM 36 C C36 UHB . . . G 3 46.245 24.086 2.1 0.97 82.22 ? C36 UHB 602 B 1 
HETATM 37 N N37 UHB . . . G 3 45.818 22.834 1.964 0.97 78.54 ? N37 UHB 602 B 1 
HETATM 38 C C38 UHB . . . G 3 44.965 24.682 3.928 0.97 80.59 ? C38 UHB 602 B 1 
HETATM 39 N N39 UHB . . . G 3 44.603 25.592 4.826 0.97 79.22 ? N39 UHB 602 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#