data_8SX0 # _model_server_result.job_id L0oaBiCD2tCOFXcKzUMFzQ _model_server_result.datetime_utc '2024-11-14 18:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 8SX0 # _exptl.entry_id 8SX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.69 _cell.angle_gamma 90 _cell.entry_id 8SX0 _cell.length_a 23.06 _cell.length_b 46.576 _cell.length_c 75.987 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 71 A LEU 3670 1_555 A N MSE 72 A MSE 3671 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 72 A MSE 3671 1_555 A N LYS 73 A LYS 3672 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C LEU 71 B LEU 3670 1_555 B N MSE 72 B MSE 3671 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C MSE 72 B MSE 3671 1_555 B N LYS 73 B LYS 3672 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 H CA CA . B CA 203 1_555 J O HOH . B HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc2 H CA CA . B CA 203 1_555 B OG SER 39 B SER 3638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 8SX0 _atom_sites.fract_transf_matrix[1][1] 0.043365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001279 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 201 201 PO4 PO4 . D 2 PO4 A 1 202 202 PO4 PO4 . E 3 CA A 1 203 1 CA CA . F 2 PO4 B 1 201 201 PO4 PO4 . G 4 GOL B 1 202 401 GOL GOL . H 3 CA B 1 203 2 CA CA . I 5 HOH A 1 301 135 HOH HOH . I 5 HOH A 2 302 116 HOH HOH . I 5 HOH A 3 303 36 HOH HOH . I 5 HOH A 4 304 106 HOH HOH . I 5 HOH A 5 305 62 HOH HOH . I 5 HOH A 6 306 81 HOH HOH . I 5 HOH A 7 307 126 HOH HOH . I 5 HOH A 8 308 13 HOH HOH . I 5 HOH A 9 309 111 HOH HOH . I 5 HOH A 10 310 19 HOH HOH . I 5 HOH A 11 311 11 HOH HOH . I 5 HOH A 12 312 27 HOH HOH . I 5 HOH A 13 313 74 HOH HOH . I 5 HOH A 14 314 99 HOH HOH . I 5 HOH A 15 315 66 HOH HOH . I 5 HOH A 16 316 2 HOH HOH . I 5 HOH A 17 317 56 HOH HOH . I 5 HOH A 18 318 9 HOH HOH . I 5 HOH A 19 319 73 HOH HOH . I 5 HOH A 20 320 43 HOH HOH . I 5 HOH A 21 321 16 HOH HOH . I 5 HOH A 22 322 80 HOH HOH . I 5 HOH A 23 323 115 HOH HOH . I 5 HOH A 24 324 82 HOH HOH . I 5 HOH A 25 325 23 HOH HOH . I 5 HOH A 26 326 31 HOH HOH . I 5 HOH A 27 327 34 HOH HOH . I 5 HOH A 28 328 52 HOH HOH . I 5 HOH A 29 329 42 HOH HOH . I 5 HOH A 30 330 20 HOH HOH . I 5 HOH A 31 331 17 HOH HOH . I 5 HOH A 32 332 67 HOH HOH . I 5 HOH A 33 333 63 HOH HOH . I 5 HOH A 34 334 96 HOH HOH . I 5 HOH A 35 335 15 HOH HOH . I 5 HOH A 36 336 33 HOH HOH . I 5 HOH A 37 337 110 HOH HOH . I 5 HOH A 38 338 45 HOH HOH . I 5 HOH A 39 339 75 HOH HOH . I 5 HOH A 40 340 59 HOH HOH . I 5 HOH A 41 341 29 HOH HOH . I 5 HOH A 42 342 55 HOH HOH . I 5 HOH A 43 343 6 HOH HOH . I 5 HOH A 44 344 65 HOH HOH . I 5 HOH A 45 345 107 HOH HOH . I 5 HOH A 46 346 25 HOH HOH . I 5 HOH A 47 347 104 HOH HOH . I 5 HOH A 48 348 91 HOH HOH . I 5 HOH A 49 349 119 HOH HOH . I 5 HOH A 50 350 136 HOH HOH . I 5 HOH A 51 351 61 HOH HOH . I 5 HOH A 52 352 134 HOH HOH . I 5 HOH A 53 353 101 HOH HOH . I 5 HOH A 54 354 77 HOH HOH . I 5 HOH A 55 355 128 HOH HOH . I 5 HOH A 56 356 108 HOH HOH . I 5 HOH A 57 357 92 HOH HOH . I 5 HOH A 58 358 130 HOH HOH . I 5 HOH A 59 359 142 HOH HOH . I 5 HOH A 60 360 120 HOH HOH . I 5 HOH A 61 361 131 HOH HOH . J 5 HOH B 1 301 76 HOH HOH . J 5 HOH B 2 302 121 HOH HOH . J 5 HOH B 3 303 4 HOH HOH . J 5 HOH B 4 304 117 HOH HOH . J 5 HOH B 5 305 41 HOH HOH . J 5 HOH B 6 306 72 HOH HOH . J 5 HOH B 7 307 10 HOH HOH . J 5 HOH B 8 308 12 HOH HOH . J 5 HOH B 9 309 7 HOH HOH . J 5 HOH B 10 310 132 HOH HOH . J 5 HOH B 11 311 83 HOH HOH . J 5 HOH B 12 312 57 HOH HOH . J 5 HOH B 13 313 39 HOH HOH . J 5 HOH B 14 314 48 HOH HOH . J 5 HOH B 15 315 32 HOH HOH . J 5 HOH B 16 316 3 HOH HOH . J 5 HOH B 17 317 51 HOH HOH . J 5 HOH B 18 318 18 HOH HOH . J 5 HOH B 19 319 26 HOH HOH . J 5 HOH B 20 320 105 HOH HOH . J 5 HOH B 21 321 8 HOH HOH . J 5 HOH B 22 322 44 HOH HOH . J 5 HOH B 23 323 102 HOH HOH . J 5 HOH B 24 324 71 HOH HOH . J 5 HOH B 25 325 5 HOH HOH . J 5 HOH B 26 326 28 HOH HOH . J 5 HOH B 27 327 93 HOH HOH . J 5 HOH B 28 328 53 HOH HOH . J 5 HOH B 29 329 127 HOH HOH . J 5 HOH B 30 330 90 HOH HOH . J 5 HOH B 31 331 118 HOH HOH . J 5 HOH B 32 332 54 HOH HOH . J 5 HOH B 33 333 68 HOH HOH . J 5 HOH B 34 334 70 HOH HOH . J 5 HOH B 35 335 138 HOH HOH . J 5 HOH B 36 336 79 HOH HOH . J 5 HOH B 37 337 88 HOH HOH . J 5 HOH B 38 338 38 HOH HOH . J 5 HOH B 39 339 40 HOH HOH . J 5 HOH B 40 340 69 HOH HOH . J 5 HOH B 41 341 60 HOH HOH . J 5 HOH B 42 342 22 HOH HOH . J 5 HOH B 43 343 14 HOH HOH . J 5 HOH B 44 344 35 HOH HOH . J 5 HOH B 45 345 78 HOH HOH . J 5 HOH B 46 346 85 HOH HOH . J 5 HOH B 47 347 24 HOH HOH . J 5 HOH B 48 348 122 HOH HOH . J 5 HOH B 49 349 21 HOH HOH . J 5 HOH B 50 350 89 HOH HOH . J 5 HOH B 51 351 137 HOH HOH . J 5 HOH B 52 352 129 HOH HOH . J 5 HOH B 53 353 50 HOH HOH . J 5 HOH B 54 354 64 HOH HOH . J 5 HOH B 55 355 140 HOH HOH . J 5 HOH B 56 356 47 HOH HOH . J 5 HOH B 57 357 139 HOH HOH . J 5 HOH B 58 358 37 HOH HOH . J 5 HOH B 59 359 95 HOH HOH . J 5 HOH B 60 360 100 HOH HOH . J 5 HOH B 61 361 125 HOH HOH . J 5 HOH B 62 362 141 HOH HOH . J 5 HOH B 63 363 49 HOH HOH . J 5 HOH B 64 364 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 15.01 11.776 20.915 0.71 34.31 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . G 4 13.893 11.436 21.657 0.71 28.21 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . G 4 15.254 13.204 21.303 0.71 48 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . G 4 15.67 13.251 22.637 0.71 58.57 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . G 4 16.272 13.82 20.385 0.71 38.49 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . G 4 16.041 13.348 19.098 0.71 28.92 ? O3 GOL 202 B 1 HETATM 7 H H11 GOL . . . G 4 15.788 11.233 21.116 0.71 41.18 ? H11 GOL 202 B 1 HETATM 8 H H12 GOL . . . G 4 14.875 11.704 19.957 0.71 41.18 ? H12 GOL 202 B 1 HETATM 9 H HO1 GOL . . . G 4 14.015 11.771 22.462 0.71 33.86 ? HO1 GOL 202 B 1 HETATM 10 H H2 GOL . . . G 4 14.43 13.705 21.193 0.71 57.61 ? H2 GOL 202 B 1 HETATM 11 H HO2 GOL . . . G 4 16.41 12.794 22.695 0.71 70.29 ? HO2 GOL 202 B 1 HETATM 12 H H31 GOL . . . G 4 16.204 14.785 20.455 0.71 46.2 ? H31 GOL 202 B 1 HETATM 13 H H32 GOL . . . G 4 17.157 13.6 20.717 0.71 46.2 ? H32 GOL 202 B 1 HETATM 14 H HO3 GOL . . . G 4 16.657 12.785 18.956 0.71 34.71 ? HO3 GOL 202 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #