data_8SX2
#
_model_server_result.job_id            AqZUSz4GYSS3pmPZ97WqJA 
_model_server_result.datetime_utc      '2024-11-05 05:04:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sx2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8SX2 
#
_exptl.entry_id    8SX2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              537.528 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SX2 
_cell.length_a            61.905 
_cell.length_b            72.265 
_cell.length_c            160.978 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SX2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H27 N9 O6' 
_chem_comp.formula_weight    537.528 
_chem_comp.id                UHB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 UHB doub 358 n y 
C01 C06 UHB sing 359 n y 
C02 C03 UHB sing 360 n y 
C03 C04 UHB doub 361 n y 
C04 C05 UHB sing 362 n y 
C04 N11 UHB sing 363 n n 
C05 C06 UHB doub 364 n y 
C05 C08 UHB sing 365 n n 
C06 C07 UHB sing 366 n n 
C07 N09 UHB sing 367 n n 
C07 O10 UHB doub 368 n n 
C08 N09 UHB sing 369 n n 
N11 C12 UHB sing 370 n n 
C12 O13 UHB doub 371 n n 
C12 C14 UHB sing 372 n n 
C14 N15 UHB sing 373 n n 
N15 C16 UHB sing 374 n n 
N15 C20 UHB sing 375 n n 
C16 C17 UHB sing 376 n n 
C17 N18 UHB sing 377 n n 
N18 C19 UHB sing 378 n n 
N18 C21 UHB sing 379 n n 
C19 C20 UHB sing 380 n n 
C21 C22 UHB sing 381 n n 
C21 O27 UHB doub 382 n n 
C22 C23 UHB sing 383 n n 
C22 O26 UHB sing 384 n n 
C23 C24 UHB sing 385 n n 
C23 O28 UHB sing 386 n n 
C24 C25 UHB sing 387 n n 
C24 O29 UHB sing 388 n n 
C25 O26 UHB sing 389 n n 
C25 N30 UHB sing 390 n n 
N30 C32 UHB sing 391 n y 
N30 C33 UHB sing 392 n y 
C31 C32 UHB doub 393 n y 
C31 N34 UHB sing 394 n y 
C31 C38 UHB sing 395 n y 
C32 N37 UHB sing 396 n y 
C33 N34 UHB doub 397 n y 
N35 C36 UHB sing 398 n y 
N35 C38 UHB doub 399 n y 
C36 N37 UHB doub 400 n y 
C38 N39 UHB sing 401 n n 
C01 H01 UHB sing 402 n n 
C02 H02 UHB sing 403 n n 
C03 H03 UHB sing 404 n n 
C08 H081 UHB sing 405 n n 
C08 H082 UHB sing 406 n n 
N09 HN09 UHB sing 407 n n 
C14 H14 UHB sing 408 n n 
C14 H14A UHB sing 409 n n 
C16 H16 UHB sing 410 n n 
C16 H16A UHB sing 411 n n 
C17 H17 UHB sing 412 n n 
C17 H17A UHB sing 413 n n 
C19 H19 UHB sing 414 n n 
C19 H19A UHB sing 415 n n 
C20 H20 UHB sing 416 n n 
C20 H20A UHB sing 417 n n 
C22 H22 UHB sing 418 n n 
C23 H23 UHB sing 419 n n 
C24 H24 UHB sing 420 n n 
C25 H25 UHB sing 421 n n 
O28 HO28 UHB sing 422 n n 
O29 HO29 UHB sing 423 n n 
C33 H33 UHB sing 424 n n 
C36 H36 UHB sing 425 n n 
N39 HN39 UHB sing 426 n n 
N39 HN3A UHB sing 427 n n 
N11 HN11 UHB sing 428 n n 
#
_atom_sites.entry_id                     8SX2 
_atom_sites.fract_transf_matrix[1][1]    0.016154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013838 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UHB A 1 601 601 UHB UHB . 
D 2 UHB B 1 601 601 UHB UHB . 
E 3 HOH A 1 701 42 HOH HOH . 
E 3 HOH A 2 702 39 HOH HOH . 
E 3 HOH A 3 703 29 HOH HOH . 
E 3 HOH A 4 704 7 HOH HOH . 
E 3 HOH A 5 705 25 HOH HOH . 
E 3 HOH A 6 706 19 HOH HOH . 
E 3 HOH A 7 707 37 HOH HOH . 
E 3 HOH A 8 708 3 HOH HOH . 
E 3 HOH A 9 709 6 HOH HOH . 
E 3 HOH A 10 710 21 HOH HOH . 
E 3 HOH A 11 711 23 HOH HOH . 
E 3 HOH A 12 712 32 HOH HOH . 
E 3 HOH A 13 713 38 HOH HOH . 
E 3 HOH A 14 714 31 HOH HOH . 
E 3 HOH A 15 715 30 HOH HOH . 
E 3 HOH A 16 716 15 HOH HOH . 
E 3 HOH A 17 717 33 HOH HOH . 
E 3 HOH A 18 718 11 HOH HOH . 
E 3 HOH A 19 719 14 HOH HOH . 
E 3 HOH A 20 720 12 HOH HOH . 
E 3 HOH A 21 721 5 HOH HOH . 
E 3 HOH A 22 722 13 HOH HOH . 
E 3 HOH A 23 723 18 HOH HOH . 
E 3 HOH A 24 724 10 HOH HOH . 
E 3 HOH A 25 725 43 HOH HOH . 
E 3 HOH A 26 726 24 HOH HOH . 
E 3 HOH A 27 727 26 HOH HOH . 
E 3 HOH A 28 728 22 HOH HOH . 
E 3 HOH A 29 729 40 HOH HOH . 
F 3 HOH B 1 701 36 HOH HOH . 
F 3 HOH B 2 702 35 HOH HOH . 
F 3 HOH B 3 703 16 HOH HOH . 
F 3 HOH B 4 704 17 HOH HOH . 
F 3 HOH B 5 705 20 HOH HOH . 
F 3 HOH B 6 706 28 HOH HOH . 
F 3 HOH B 7 707 27 HOH HOH . 
F 3 HOH B 8 708 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 UHB . . . D 2 -27.226 22.775 12.812 1 82.09 ? C01 UHB 601 B 1 
HETATM 2 C C02 UHB . . . D 2 -27.844 22.413 11.628 1 81.02 ? C02 UHB 601 B 1 
HETATM 3 C C03 UHB . . . D 2 -29.24 22.366 11.52 1 82.66 ? C03 UHB 601 B 1 
HETATM 4 C C04 UHB . . . D 2 -30.049 22.672 12.604 1 75.73 ? C04 UHB 601 B 1 
HETATM 5 C C05 UHB . . . D 2 -29.427 23.045 13.804 1 75.43 ? C05 UHB 601 B 1 
HETATM 6 C C06 UHB . . . D 2 -28.046 23.086 13.889 1 88.62 ? C06 UHB 601 B 1 
HETATM 7 C C07 UHB . . . D 2 -27.68 23.506 15.255 1 89.89 ? C07 UHB 601 B 1 
HETATM 8 C C08 UHB . . . D 2 -30.031 23.428 15.121 1 66.03 ? C08 UHB 601 B 1 
HETATM 9 N N09 UHB . . . D 2 -28.85 23.644 15.933 1 88.95 ? N09 UHB 601 B 1 
HETATM 10 O O10 UHB . . . D 2 -26.552 23.703 15.715 1 83.64 ? O10 UHB 601 B 1 
HETATM 11 N N11 UHB . . . D 2 -31.459 22.643 12.483 1 88.94 ? N11 UHB 601 B 1 
HETATM 12 C C12 UHB . . . D 2 -32.32 21.695 12.917 1 72.85 ? C12 UHB 601 B 1 
HETATM 13 O O13 UHB . . . D 2 -32.083 20.943 13.848 1 86.6 ? O13 UHB 601 B 1 
HETATM 14 C C14 UHB . . . D 2 -33.639 21.636 12.163 1 74.05 ? C14 UHB 601 B 1 
HETATM 15 N N15 UHB . . . D 2 -34.82 21.599 13.017 1 75.18 ? N15 UHB 601 B 1 
HETATM 16 C C16 UHB . . . D 2 -34.721 22.538 14.141 1 73.06 ? C16 UHB 601 B 1 
HETATM 17 C C17 UHB . . . D 2 -35.968 22.498 14.996 1 89.06 ? C17 UHB 601 B 1 
HETATM 18 N N18 UHB . . . D 2 -36.171 21.135 15.48 1 78.51 ? N18 UHB 601 B 1 
HETATM 19 C C19 UHB . . . D 2 -36.329 20.209 14.363 1 71.81 ? C19 UHB 601 B 1 
HETATM 20 C C20 UHB . . . D 2 -35.082 20.244 13.511 1 78.26 ? C20 UHB 601 B 1 
HETATM 21 C C21 UHB . . . D 2 -36.168 20.724 16.759 1 95.02 ? C21 UHB 601 B 1 
HETATM 22 C C22 UHB . . . D 2 -36.011 21.735 17.859 1 81.83 ? C22 UHB 601 B 1 
HETATM 23 C C23 UHB . . . D 2 -34.566 22.223 18.015 1 68.19 ? C23 UHB 601 B 1 
HETATM 24 C C24 UHB . . . D 2 -34.094 21.675 19.374 1 73.73 ? C24 UHB 601 B 1 
HETATM 25 C C25 UHB . . . D 2 -35.432 21.556 20.099 1 80.6 ? C25 UHB 601 B 1 
HETATM 26 O O26 UHB . . . D 2 -36.361 21.138 19.107 1 99.11 ? O26 UHB 601 B 1 
HETATM 27 O O27 UHB . . . D 2 -36.29 19.536 17.055 1 102.35 ? O27 UHB 601 B 1 
HETATM 28 O O28 UHB . . . D 2 -34.523 23.639 18.002 1 77.51 ? O28 UHB 601 B 1 
HETATM 29 O O29 UHB . . . D 2 -33.211 22.557 20.034 1 74.67 ? O29 UHB 601 B 1 
HETATM 30 N N30 UHB . . . D 2 -35.451 20.588 21.191 1 82.06 ? N30 UHB 601 B 1 
HETATM 31 C C31 UHB . . . D 2 -35.828 19.551 23.096 1 64.13 ? C31 UHB 601 B 1 
HETATM 32 C C32 UHB . . . D 2 -36.104 20.71 22.396 1 70.59 ? C32 UHB 601 B 1 
HETATM 33 C C33 UHB . . . D 2 -34.824 19.367 21.226 1 82.42 ? C33 UHB 601 B 1 
HETATM 34 N N34 UHB . . . D 2 -35.02 18.713 22.343 1 86.51 ? N34 UHB 601 B 1 
HETATM 35 N N35 UHB . . . D 2 -37.147 20.447 24.838 1 62.86 ? N35 UHB 601 B 1 
HETATM 36 C C36 UHB . . . D 2 -37.329 21.51 24.045 1 65.11 ? C36 UHB 601 B 1 
HETATM 37 N N37 UHB . . . D 2 -36.858 21.737 22.822 1 72.26 ? N37 UHB 601 B 1 
HETATM 38 C C38 UHB . . . D 2 -36.382 19.426 24.384 1 66.6 ? C38 UHB 601 B 1 
HETATM 39 N N39 UHB . . . D 2 -36.197 18.367 25.167 1 70.92 ? N39 UHB 601 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#