data_8SX4
#
_model_server_result.job_id            RK6nnY9Z-_15vrO8PHZEGA 
_model_server_result.datetime_utc      '2024-11-26 20:28:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    8SX4 
#
_exptl.entry_id    8SX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.243 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.13 
_cell.angle_gamma         90 
_cell.entry_id            8SX4 
_cell.length_a            49.125 
_cell.length_b            74.328 
_cell.length_c            51.877 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H19 N5 O11 P2' 
_chem_comp.formula_weight    459.243 
_chem_comp.id                M7G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A M7G doub 218 n n 
PA O2A M7G sing 219 n n 
PA O3A M7G sing 220 n n 
PA O5' M7G sing 221 n n 
O2A HOA2 M7G sing 222 n n 
O3A PB M7G sing 223 n n 
O5' C5' M7G sing 224 n n 
PB O1B M7G doub 225 n n 
PB O2B M7G sing 226 n n 
PB O3B M7G sing 227 n n 
O2B HOB2 M7G sing 228 n n 
O3B HOB3 M7G sing 229 n n 
C5' C4' M7G sing 230 n n 
C5' "H5'1" M7G sing 231 n n 
C5' "H5'2" M7G sing 232 n n 
C4' O4' M7G sing 233 n n 
C4' C3' M7G sing 234 n n 
C4' H4' M7G sing 235 n n 
O4' C1' M7G sing 236 n n 
C3' O3' M7G sing 237 n n 
C3' C2' M7G sing 238 n n 
C3' H3' M7G sing 239 n n 
O3' HO3' M7G sing 240 n n 
C2' O2' M7G sing 241 n n 
C2' C1' M7G sing 242 n n 
C2' H2' M7G sing 243 n n 
O2' HO2' M7G sing 244 n n 
C1' N9 M7G sing 245 n n 
C1' H1' M7G sing 246 n n 
N9 C8 M7G sing 247 n n 
N9 C4 M7G sing 248 n n 
C8 N7 M7G sing 249 n n 
C8 H81 M7G sing 250 n n 
C8 H82 M7G sing 251 n n 
N7 CM7 M7G sing 252 n n 
N7 C5 M7G sing 253 n n 
CM7 HM71 M7G sing 254 n n 
CM7 HM72 M7G sing 255 n n 
CM7 HM73 M7G sing 256 n n 
C5 C6 M7G sing 257 n n 
C5 C4 M7G doub 258 n n 
C6 O6 M7G doub 259 n n 
C6 N1 M7G sing 260 n n 
N1 C2 M7G sing 261 n n 
N1 HN1 M7G sing 262 n n 
C2 N2 M7G sing 263 n n 
C2 N3 M7G doub 264 n n 
N2 HN21 M7G sing 265 n n 
N2 HN22 M7G sing 266 n n 
N3 C4 M7G sing 267 n n 
#
_atom_sites.entry_id                     8SX4 
_atom_sites.fract_transf_matrix[1][1]    0.020356 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002546 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WXL A 1 301 301 WXL 601 . 
D 3 M7G B 1 301 301 M7G M7G . 
E 4 HOH A 1 401 118 HOH HOH . 
E 4 HOH A 2 402 90 HOH HOH . 
E 4 HOH A 3 403 3 HOH HOH . 
E 4 HOH A 4 404 134 HOH HOH . 
E 4 HOH A 5 405 71 HOH HOH . 
E 4 HOH A 6 406 128 HOH HOH . 
E 4 HOH A 7 407 82 HOH HOH . 
E 4 HOH A 8 408 163 HOH HOH . 
E 4 HOH A 9 409 11 HOH HOH . 
E 4 HOH A 10 410 5 HOH HOH . 
E 4 HOH A 11 411 126 HOH HOH . 
E 4 HOH A 12 412 48 HOH HOH . 
E 4 HOH A 13 413 164 HOH HOH . 
E 4 HOH A 14 414 83 HOH HOH . 
E 4 HOH A 15 415 4 HOH HOH . 
E 4 HOH A 16 416 121 HOH HOH . 
E 4 HOH A 17 417 51 HOH HOH . 
E 4 HOH A 18 418 63 HOH HOH . 
E 4 HOH A 19 419 7 HOH HOH . 
E 4 HOH A 20 420 13 HOH HOH . 
E 4 HOH A 21 421 173 HOH HOH . 
E 4 HOH A 22 422 18 HOH HOH . 
E 4 HOH A 23 423 30 HOH HOH . 
E 4 HOH A 24 424 53 HOH HOH . 
E 4 HOH A 25 425 44 HOH HOH . 
E 4 HOH A 26 426 180 HOH HOH . 
E 4 HOH A 27 427 100 HOH HOH . 
E 4 HOH A 28 428 19 HOH HOH . 
E 4 HOH A 29 429 36 HOH HOH . 
E 4 HOH A 30 430 61 HOH HOH . 
E 4 HOH A 31 431 72 HOH HOH . 
E 4 HOH A 32 432 28 HOH HOH . 
E 4 HOH A 33 433 170 HOH HOH . 
E 4 HOH A 34 434 67 HOH HOH . 
E 4 HOH A 35 435 159 HOH HOH . 
E 4 HOH A 36 436 152 HOH HOH . 
E 4 HOH A 37 437 8 HOH HOH . 
E 4 HOH A 38 438 135 HOH HOH . 
E 4 HOH A 39 439 39 HOH HOH . 
E 4 HOH A 40 440 15 HOH HOH . 
E 4 HOH A 41 441 86 HOH HOH . 
E 4 HOH A 42 442 165 HOH HOH . 
E 4 HOH A 43 443 43 HOH HOH . 
E 4 HOH A 44 444 60 HOH HOH . 
E 4 HOH A 45 445 104 HOH HOH . 
E 4 HOH A 46 446 20 HOH HOH . 
E 4 HOH A 47 447 117 HOH HOH . 
E 4 HOH A 48 448 133 HOH HOH . 
E 4 HOH A 49 449 98 HOH HOH . 
E 4 HOH A 50 450 97 HOH HOH . 
E 4 HOH A 51 451 22 HOH HOH . 
E 4 HOH A 52 452 150 HOH HOH . 
E 4 HOH A 53 453 140 HOH HOH . 
E 4 HOH A 54 454 38 HOH HOH . 
E 4 HOH A 55 455 122 HOH HOH . 
E 4 HOH A 56 456 130 HOH HOH . 
E 4 HOH A 57 457 70 HOH HOH . 
E 4 HOH A 58 458 49 HOH HOH . 
E 4 HOH A 59 459 178 HOH HOH . 
E 4 HOH A 60 460 137 HOH HOH . 
E 4 HOH A 61 461 111 HOH HOH . 
E 4 HOH A 62 462 54 HOH HOH . 
E 4 HOH A 63 463 102 HOH HOH . 
E 4 HOH A 64 464 141 HOH HOH . 
E 4 HOH A 65 465 23 HOH HOH . 
E 4 HOH A 66 466 148 HOH HOH . 
E 4 HOH A 67 467 101 HOH HOH . 
E 4 HOH A 68 468 136 HOH HOH . 
E 4 HOH A 69 469 125 HOH HOH . 
E 4 HOH A 70 470 80 HOH HOH . 
E 4 HOH A 71 471 169 HOH HOH . 
E 4 HOH A 72 472 120 HOH HOH . 
E 4 HOH A 73 473 113 HOH HOH . 
E 4 HOH A 74 474 168 HOH HOH . 
E 4 HOH A 75 475 177 HOH HOH . 
E 4 HOH A 76 476 45 HOH HOH . 
F 4 HOH B 1 401 155 HOH HOH . 
F 4 HOH B 2 402 105 HOH HOH . 
F 4 HOH B 3 403 58 HOH HOH . 
F 4 HOH B 4 404 160 HOH HOH . 
F 4 HOH B 5 405 119 HOH HOH . 
F 4 HOH B 6 406 40 HOH HOH . 
F 4 HOH B 7 407 154 HOH HOH . 
F 4 HOH B 8 408 25 HOH HOH . 
F 4 HOH B 9 409 162 HOH HOH . 
F 4 HOH B 10 410 10 HOH HOH . 
F 4 HOH B 11 411 2 HOH HOH . 
F 4 HOH B 12 412 29 HOH HOH . 
F 4 HOH B 13 413 55 HOH HOH . 
F 4 HOH B 14 414 85 HOH HOH . 
F 4 HOH B 15 415 103 HOH HOH . 
F 4 HOH B 16 416 9 HOH HOH . 
F 4 HOH B 17 417 172 HOH HOH . 
F 4 HOH B 18 418 34 HOH HOH . 
F 4 HOH B 19 419 176 HOH HOH . 
F 4 HOH B 20 420 68 HOH HOH . 
F 4 HOH B 21 421 174 HOH HOH . 
F 4 HOH B 22 422 64 HOH HOH . 
F 4 HOH B 23 423 16 HOH HOH . 
F 4 HOH B 24 424 73 HOH HOH . 
F 4 HOH B 25 425 87 HOH HOH . 
F 4 HOH B 26 426 112 HOH HOH . 
F 4 HOH B 27 427 33 HOH HOH . 
F 4 HOH B 28 428 42 HOH HOH . 
F 4 HOH B 29 429 27 HOH HOH . 
F 4 HOH B 30 430 59 HOH HOH . 
F 4 HOH B 31 431 124 HOH HOH . 
F 4 HOH B 32 432 35 HOH HOH . 
F 4 HOH B 33 433 37 HOH HOH . 
F 4 HOH B 34 434 110 HOH HOH . 
F 4 HOH B 35 435 93 HOH HOH . 
F 4 HOH B 36 436 31 HOH HOH . 
F 4 HOH B 37 437 116 HOH HOH . 
F 4 HOH B 38 438 17 HOH HOH . 
F 4 HOH B 39 439 88 HOH HOH . 
F 4 HOH B 40 440 147 HOH HOH . 
F 4 HOH B 41 441 156 HOH HOH . 
F 4 HOH B 42 442 107 HOH HOH . 
F 4 HOH B 43 443 21 HOH HOH . 
F 4 HOH B 44 444 32 HOH HOH . 
F 4 HOH B 45 445 91 HOH HOH . 
F 4 HOH B 46 446 146 HOH HOH . 
F 4 HOH B 47 447 6 HOH HOH . 
F 4 HOH B 48 448 74 HOH HOH . 
F 4 HOH B 49 449 24 HOH HOH . 
F 4 HOH B 50 450 138 HOH HOH . 
F 4 HOH B 51 451 46 HOH HOH . 
F 4 HOH B 52 452 157 HOH HOH . 
F 4 HOH B 53 453 52 HOH HOH . 
F 4 HOH B 54 454 144 HOH HOH . 
F 4 HOH B 55 455 143 HOH HOH . 
F 4 HOH B 56 456 96 HOH HOH . 
F 4 HOH B 57 457 123 HOH HOH . 
F 4 HOH B 58 458 92 HOH HOH . 
F 4 HOH B 59 459 57 HOH HOH . 
F 4 HOH B 60 460 76 HOH HOH . 
F 4 HOH B 61 461 139 HOH HOH . 
F 4 HOH B 62 462 56 HOH HOH . 
F 4 HOH B 63 463 77 HOH HOH . 
F 4 HOH B 64 464 66 HOH HOH . 
F 4 HOH B 65 465 106 HOH HOH . 
F 4 HOH B 66 466 166 HOH HOH . 
F 4 HOH B 67 467 79 HOH HOH . 
F 4 HOH B 68 468 129 HOH HOH . 
F 4 HOH B 69 469 41 HOH HOH . 
F 4 HOH B 70 470 78 HOH HOH . 
F 4 HOH B 71 471 14 HOH HOH . 
F 4 HOH B 72 472 151 HOH HOH . 
F 4 HOH B 73 473 75 HOH HOH . 
F 4 HOH B 74 474 47 HOH HOH . 
F 4 HOH B 75 475 94 HOH HOH . 
F 4 HOH B 76 476 142 HOH HOH . 
F 4 HOH B 77 477 145 HOH HOH . 
F 4 HOH B 78 478 115 HOH HOH . 
F 4 HOH B 79 479 95 HOH HOH . 
F 4 HOH B 80 480 167 HOH HOH . 
F 4 HOH B 81 481 132 HOH HOH . 
F 4 HOH B 82 482 50 HOH HOH . 
F 4 HOH B 83 483 108 HOH HOH . 
F 4 HOH B 84 484 179 HOH HOH . 
F 4 HOH B 85 485 84 HOH HOH . 
F 4 HOH B 86 486 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA M7G . . . D 3 54.479 6.996 27.929 1 51.47 ? PA M7G 301 B 1 
HETATM 2 O O1A M7G . . . D 3 53.205 7.731 28.037 1 51.62 ? O1A M7G 301 B 1 
HETATM 3 O O2A M7G . . . D 3 54.297 5.478 28.012 1 51.77 ? O2A M7G 301 B 1 
HETATM 4 O O3A M7G . . . D 3 55.236 7.267 26.556 1 52.84 ? O3A M7G 301 B 1 
HETATM 5 O O5' M7G . . . D 3 55.495 7.424 29.109 1 49.59 ? O5' M7G 301 B 1 
HETATM 6 P PB M7G . . . D 3 56.333 6.395 25.789 1 53.75 ? PB M7G 301 B 1 
HETATM 7 O O1B M7G . . . D 3 57.521 7.351 25.618 1 54.3 ? O1B M7G 301 B 1 
HETATM 8 O O2B M7G . . . D 3 56.663 5.175 26.554 1 53.73 ? O2B M7G 301 B 1 
HETATM 9 O O3B M7G . . . D 3 55.707 6.102 24.422 1 53.92 ? O3B M7G 301 B 1 
HETATM 10 C C5' M7G . . . D 3 56.808 7.993 28.907 1 47.78 ? C5' M7G 301 B 1 
HETATM 11 C C4' M7G . . . D 3 57.387 8.369 30.248 1 45.7 ? C4' M7G 301 B 1 
HETATM 12 O O4' M7G . . . D 3 56.689 9.521 30.77 1 43.98 ? O4' M7G 301 B 1 
HETATM 13 C C3' M7G . . . D 3 57.263 7.305 31.337 1 45.03 ? C3' M7G 301 B 1 
HETATM 14 O O3' M7G . . . D 3 58.32 6.351 31.303 1 45.41 ? O3' M7G 301 B 1 
HETATM 15 C C2' M7G . . . D 3 57.283 8.148 32.613 1 43.68 ? C2' M7G 301 B 1 
HETATM 16 O O2' M7G . . . D 3 58.61 8.487 33.01 1 43.45 ? O2' M7G 301 B 1 
HETATM 17 C C1' M7G . . . D 3 56.488 9.381 32.169 1 42.34 ? C1' M7G 301 B 1 
HETATM 18 N N9 M7G . . . D 3 55.1 9.305 32.603 1 39.2 ? N9 M7G 301 B 1 
HETATM 19 C C8 M7G . . . D 3 54.046 9.075 31.629 1 37.8 ? C8 M7G 301 B 1 
HETATM 20 N N7 M7G . . . D 3 52.877 9.284 32.41 1 36.67 ? N7 M7G 301 B 1 
HETATM 21 C CM7 M7G . . . D 3 51.568 9.187 31.779 1 35.9 ? CM7 M7G 301 B 1 
HETATM 22 C C5 M7G . . . D 3 53.201 9.888 33.617 1 36.16 ? C5 M7G 301 B 1 
HETATM 23 C C6 M7G . . . D 3 52.402 10.409 34.674 1 34.94 ? C6 M7G 301 B 1 
HETATM 24 O O6 M7G . . . D 3 51.187 10.428 34.743 1 33.39 ? O6 M7G 301 B 1 
HETATM 25 N N1 M7G . . . D 3 53.187 10.916 35.7 1 34.96 ? N1 M7G 301 B 1 
HETATM 26 C C2 M7G . . . D 3 54.564 10.926 35.715 1 35.4 ? C2 M7G 301 B 1 
HETATM 27 N N2 M7G . . . D 3 55.154 11.45 36.792 1 34.94 ? N2 M7G 301 B 1 
HETATM 28 N N3 M7G . . . D 3 55.32 10.443 34.725 1 36.17 ? N3 M7G 301 B 1 
HETATM 29 C C4 M7G . . . D 3 54.594 9.933 33.714 1 37.16 ? C4 M7G 301 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           29 
#