data_8SX5 # _model_server_result.job_id XgspBCh5l2821UVqcPzdmA _model_server_result.datetime_utc '2024-11-23 01:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 8SX5 # _exptl.entry_id 8SX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 772.406 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SX5 _cell.length_a 44.522 _cell.length_b 44.522 _cell.length_c 85.524 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' LCC 1 A LCC 1 1_555 A P TLN 2 A TLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? covale ? covale2 A O3' TLN 2 A TLN 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? covale ? covale5 B O3' LCC 1 B LCC 1 1_555 B P TLN 2 B TLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale6 B O3' TLN 2 B TLN 2 1_555 B P LCC 3 B LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? covale ? covale7 B O3' LCC 3 B LCC 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale8 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 13 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 13 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 13 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H27 N10 O17 P3' _chem_comp.formula_weight 772.406 _chem_comp.id G3A _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 C36 G3A doub 116 n n C36 N31 G3A sing 117 n n C36 C35 G3A sing 118 n n N31 C32 G3A sing 119 n n N31 HN31 G3A sing 120 n n C32 N32 G3A sing 121 n n C32 N33 G3A doub 122 n n N32 H321 G3A sing 123 n n N32 H322 G3A sing 124 n n N33 C34 G3A sing 125 n n C35 C34 G3A doub 126 n y C35 N37 G3A sing 127 n y C34 N39 G3A sing 128 n y N37 C38 G3A doub 129 n y C38 N39 G3A sing 130 n y C38 H38 G3A sing 131 n n N39 C41 G3A sing 132 n n C41 C42 G3A sing 133 n n C41 O44 G3A sing 134 n n C41 H41 G3A sing 135 n n O44 C44 G3A sing 136 n n C42 O42 G3A sing 137 n n C42 C43 G3A sing 138 n n C42 H42 G3A sing 139 n n O42 HO42 G3A sing 140 n n C43 O43 G3A sing 141 n n C43 C44 G3A sing 142 n n C43 H43 G3A sing 143 n n O43 HO43 G3A sing 144 n n C44 C45 G3A sing 145 n n C44 H44 G3A sing 146 n n C45 O45 G3A sing 147 n n C45 H451 G3A sing 148 n n C45 H452 G3A sing 149 n n O45 PA G3A sing 150 n n PA O2A G3A doub 151 n n PA O1 G3A sing 152 n n PA O1A G3A sing 153 n n O1A HO1A G3A sing 154 n n O1 PB G3A sing 155 n n PB O3A G3A sing 156 n n PB O3B G3A doub 157 n n PB O2B G3A sing 158 n n O2B HO2B G3A sing 159 n n O3A PG G3A sing 160 n n PG O1G G3A doub 161 n n PG O25 G3A sing 162 n n PG O2G G3A sing 163 n n O2G HO2G G3A sing 164 n n O25 C25 G3A sing 165 n n C25 C24 G3A sing 166 n n C25 H251 G3A sing 167 n n C25 H252 G3A sing 168 n n C24 O24 G3A sing 169 n n C24 C23 G3A sing 170 n n C24 H24 G3A sing 171 n n C23 C22 G3A sing 172 n n C23 O23 G3A sing 173 n n C23 H23 G3A sing 174 n n O23 HO23 G3A sing 175 n n C22 C21 G3A sing 176 n n C22 O22 G3A sing 177 n n C22 H22 G3A sing 178 n n O22 HO22 G3A sing 179 n n O24 C21 G3A sing 180 n n C21 N19 G3A sing 181 n n C21 H21 G3A sing 182 n n N19 C14 G3A sing 183 n y N19 C18 G3A sing 184 n y C14 C15 G3A doub 185 n y C14 N13 G3A sing 186 n y N13 C12 G3A doub 187 n y C12 N11 G3A sing 188 n y C12 H12 G3A sing 189 n n N11 C16 G3A doub 190 n y C18 N17 G3A doub 191 n y C18 H18 G3A sing 192 n n N17 C15 G3A sing 193 n y C15 C16 G3A sing 194 n y C16 N16 G3A sing 195 n n N16 H161 G3A sing 196 n n N16 H162 G3A sing 197 n n # _atom_sites.entry_id 8SX5 _atom_sites.fract_transf_matrix[1][1] 0.022461 _atom_sites.fract_transf_matrix[1][2] 0.012968 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G3A A 1 101 101 G3A GA3 . D 2 G3A B 1 101 101 G3A GA3 . E 3 HOH A 1 201 8 HOH HOH . E 3 HOH A 2 202 5 HOH HOH . F 3 HOH B 1 201 4 HOH HOH . F 3 HOH B 2 202 6 HOH HOH . F 3 HOH B 3 203 3 HOH HOH . F 3 HOH B 4 204 2 HOH HOH . F 3 HOH B 5 205 1 HOH HOH . F 3 HOH B 6 206 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O36 G3A . . . D 2 9.171 -34.162 127.478 1 25.58 ? O36 G3A 101 B 1 HETATM 2 C C36 G3A . . . D 2 7.944 -33.997 127.372 1 25.64 ? C36 G3A 101 B 1 HETATM 3 N N31 G3A . . . D 2 7.1 -35.036 127.065 1 24.51 ? N31 G3A 101 B 1 HETATM 4 C C32 G3A . . . D 2 5.713 -34.818 126.949 1 25.38 ? C32 G3A 101 B 1 HETATM 5 N N32 G3A . . . D 2 4.935 -35.814 126.655 1 23.99 ? N32 G3A 101 B 1 HETATM 6 N N33 G3A . . . D 2 5.19 -33.608 127.15 1 24.2 ? N33 G3A 101 B 1 HETATM 7 C C35 G3A . . . D 2 7.411 -32.81 127.57 1 26.55 ? C35 G3A 101 B 1 HETATM 8 C C34 G3A . . . D 2 6.073 -32.621 127.442 1 24.42 ? C34 G3A 101 B 1 HETATM 9 N N37 G3A . . . D 2 8.033 -31.658 127.886 1 24.97 ? N37 G3A 101 B 1 HETATM 10 C C38 G3A . . . D 2 7.049 -30.779 127.974 1 27.72 ? C38 G3A 101 B 1 HETATM 11 N N39 G3A . . . D 2 5.869 -31.367 127.707 1 26.01 ? N39 G3A 101 B 1 HETATM 12 C C41 G3A . . . D 2 4.552 -30.694 127.664 1 31.5 ? C41 G3A 101 B 1 HETATM 13 O O44 G3A . . . D 2 4.68 -29.25 128.001 1 33.05 ? O44 G3A 101 B 1 HETATM 14 C C42 G3A . . . D 2 3.593 -31.248 128.654 1 32.96 ? C42 G3A 101 B 1 HETATM 15 O O42 G3A . . . D 2 2.25 -30.84 128.288 1 33.98 ? O42 G3A 101 B 1 HETATM 16 C C43 G3A . . . D 2 4.035 -30.52 129.893 1 36.75 ? C43 G3A 101 B 1 HETATM 17 O O43 G3A . . . D 2 2.99 -30.604 130.89 1 37.87 ? O43 G3A 101 B 1 HETATM 18 C C44 G3A . . . D 2 4.193 -29.079 129.327 1 36.06 ? C44 G3A 101 B 1 HETATM 19 C C45 G3A . . . D 2 5.134 -28.199 130.159 1 37.06 ? C45 G3A 101 B 1 HETATM 20 O O45 G3A . . . D 2 6.524 -28.626 130.176 1 38.17 ? O45 G3A 101 B 1 HETATM 21 P PA G3A . . . D 2 7.263 -28.632 131.653 1 46.4 ? PA G3A 101 B 1 HETATM 22 O O1A G3A . . . D 2 8.091 -29.558 131.881 1 44.9 ? O1A G3A 101 B 1 HETATM 23 O O2A G3A . . . D 2 6.205 -28.303 132.472 1 41.33 ? O2A G3A 101 B 1 HETATM 24 O O1 G3A . . . D 2 7.615 -27.127 130.966 1 41.09 ? O1 G3A 101 B 1 HETATM 25 P PB G3A . . . D 2 8.667 -26.633 129.748 1 44.69 ? PB G3A 101 B 1 HETATM 26 O O2B G3A . . . D 2 9.395 -25.442 130.253 1 52.85 ? O2B G3A 101 B 1 HETATM 27 O O3B G3A . . . D 2 9.459 -27.728 129.124 1 45.19 ? O3B G3A 101 B 1 HETATM 28 O O3A G3A . . . D 2 7.651 -26.113 128.602 1 38.57 ? O3A G3A 101 B 1 HETATM 29 P PG G3A . . . D 2 7.071 -24.604 128.64 1 37.62 ? PG G3A 101 B 1 HETATM 30 O O1G G3A . . . D 2 7.757 -23.757 127.673 1 37.36 ? O1G G3A 101 B 1 HETATM 31 O O2G G3A . . . D 2 6.742 -24.1 129.944 1 40.59 ? O2G G3A 101 B 1 HETATM 32 O O25 G3A . . . D 2 5.915 -25.145 127.576 1 37.46 ? O25 G3A 101 B 1 HETATM 33 C C25 G3A . . . D 2 4.713 -24.365 127.311 1 35.11 ? C25 G3A 101 B 1 HETATM 34 C C24 G3A . . . D 2 3.767 -25.076 126.304 1 37.24 ? C24 G3A 101 B 1 HETATM 35 C C23 G3A . . . D 2 3.143 -26.306 126.969 1 35.41 ? C23 G3A 101 B 1 HETATM 36 O O23 G3A . . . D 2 1.894 -25.963 127.577 1 34.77 ? O23 G3A 101 B 1 HETATM 37 C C22 G3A . . . D 2 2.853 -27.212 125.797 1 33.03 ? C22 G3A 101 B 1 HETATM 38 O O22 G3A . . . D 2 1.564 -26.851 125.21 1 33.72 ? O22 G3A 101 B 1 HETATM 39 O O24 G3A . . . D 2 4.416 -25.557 125.071 1 33.37 ? O24 G3A 101 B 1 HETATM 40 C C21 G3A . . . D 2 3.978 -26.907 124.827 1 32.61 ? C21 G3A 101 B 1 HETATM 41 N N19 G3A . . . D 2 5.178 -27.83 124.915 1 29.8 ? N19 G3A 101 B 1 HETATM 42 C C14 G3A . . . D 2 5.151 -29.093 124.55 1 26.71 ? C14 G3A 101 B 1 HETATM 43 N N13 G3A . . . D 2 4.13 -29.822 124.125 1 23.98 ? N13 G3A 101 B 1 HETATM 44 C C12 G3A . . . D 2 4.34 -31.15 123.84 1 25.06 ? C12 G3A 101 B 1 HETATM 45 N N11 G3A . . . D 2 5.6 -31.702 124.001 1 26.62 ? N11 G3A 101 B 1 HETATM 46 C C18 G3A . . . D 2 6.443 -27.563 125.269 1 30.1 ? C18 G3A 101 B 1 HETATM 47 N N17 G3A . . . D 2 7.173 -28.67 125.13 1 28.49 ? N17 G3A 101 B 1 HETATM 48 C C15 G3A . . . D 2 6.381 -29.638 124.707 1 26.75 ? C15 G3A 101 B 1 HETATM 49 C C16 G3A . . . D 2 6.601 -30.934 124.423 1 27.23 ? C16 G3A 101 B 1 HETATM 50 N N16 G3A . . . D 2 7.825 -31.456 124.578 1 26.55 ? N16 G3A 101 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 50 #