data_8SX6 # _model_server_result.job_id mCrY9Qgm96xzFezv3M9CAg _model_server_result.datetime_utc '2024-11-23 00:00:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 8SX6 # _exptl.entry_id 8SX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SX6 _cell.length_a 43.526 _cell.length_b 43.526 _cell.length_c 80.139 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' TLN 1 A TLN 1 1_555 A P LCC 2 A LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? covale ? covale2 A O3' LCC 2 A LCC 2 1_555 A P LCC 3 A LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.57 ? covale ? covale3 A O3' LCC 3 A LCC 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.547 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale5 B O3' TLN 1 B TLN 1 1_555 B P LCC 2 B LCC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale6 B O3' LCC 2 B LCC 2 1_555 B P LCC 3 B LCC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale7 B O3' LCC 3 B LCC 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? covale ? covale8 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? metalc ? metalc1 C MG MG . A MG 101 1_555 H O HOH . A HOH 201 3_685 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 C MG MG . A MG 101 1_555 H O HOH . A HOH 221 3_685 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 C MG MG . A MG 101 1_555 H O HOH . A HOH 225 3_685 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc4 C MG MG . A MG 101 1_555 I O HOH . B HOH 218 3_685 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc5 C MG MG . A MG 101 1_555 I O HOH . B HOH 221 3_685 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc6 C MG MG . A MG 101 1_555 I O HOH . B HOH 232 3_685 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc7 H O HOH . A HOH 218 1_555 G MG MG . B MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc8 H O HOH . A HOH 231 1_555 G MG MG . B MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 H O HOH . A HOH 234 1_555 G MG MG . B MG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc10 G MG MG . B MG 104 1_555 I O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc11 G MG MG . B MG 104 1_555 I O HOH . B HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 G MG MG . B MG 104 1_555 I O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? hydrog WATSON-CRICK hydrog1 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 13 A C 13 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 13 A C 13 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 13 A C 13 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 8SX6 _atom_sites.fract_transf_matrix[1][1] 0.022975 _atom_sites.fract_transf_matrix[1][2] 0.013264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 101 2 MG MG . D 3 5GP B 1 101 101 5GP G . E 4 AMP B 1 102 101 AMP A . F 3 5GP B 1 103 102 5GP G . G 2 MG B 1 104 1 MG MG . H 5 HOH A 1 201 14 HOH HOH . H 5 HOH A 2 202 69 HOH HOH . H 5 HOH A 3 203 27 HOH HOH . H 5 HOH A 4 204 58 HOH HOH . H 5 HOH A 5 205 72 HOH HOH . H 5 HOH A 6 206 73 HOH HOH . H 5 HOH A 7 207 10 HOH HOH . H 5 HOH A 8 208 40 HOH HOH . H 5 HOH A 9 209 24 HOH HOH . H 5 HOH A 10 210 45 HOH HOH . H 5 HOH A 11 211 37 HOH HOH . H 5 HOH A 12 212 2 HOH HOH . H 5 HOH A 13 213 50 HOH HOH . H 5 HOH A 14 214 36 HOH HOH . H 5 HOH A 15 215 61 HOH HOH . H 5 HOH A 16 216 18 HOH HOH . H 5 HOH A 17 217 51 HOH HOH . H 5 HOH A 18 218 7 HOH HOH . H 5 HOH A 19 219 52 HOH HOH . H 5 HOH A 20 220 19 HOH HOH . H 5 HOH A 21 221 15 HOH HOH . H 5 HOH A 22 222 26 HOH HOH . H 5 HOH A 23 223 25 HOH HOH . H 5 HOH A 24 224 39 HOH HOH . H 5 HOH A 25 225 11 HOH HOH . H 5 HOH A 26 226 1 HOH HOH . H 5 HOH A 27 227 68 HOH HOH . H 5 HOH A 28 228 17 HOH HOH . H 5 HOH A 29 229 53 HOH HOH . H 5 HOH A 30 230 23 HOH HOH . H 5 HOH A 31 231 9 HOH HOH . H 5 HOH A 32 232 33 HOH HOH . H 5 HOH A 33 233 38 HOH HOH . H 5 HOH A 34 234 6 HOH HOH . H 5 HOH A 35 235 22 HOH HOH . H 5 HOH A 36 236 56 HOH HOH . I 5 HOH B 1 201 28 HOH HOH . I 5 HOH B 2 202 48 HOH HOH . I 5 HOH B 3 203 20 HOH HOH . I 5 HOH B 4 204 29 HOH HOH . I 5 HOH B 5 205 35 HOH HOH . I 5 HOH B 6 206 43 HOH HOH . I 5 HOH B 7 207 57 HOH HOH . I 5 HOH B 8 208 21 HOH HOH . I 5 HOH B 9 209 60 HOH HOH . I 5 HOH B 10 210 62 HOH HOH . I 5 HOH B 11 211 31 HOH HOH . I 5 HOH B 12 212 49 HOH HOH . I 5 HOH B 13 213 42 HOH HOH . I 5 HOH B 14 214 5 HOH HOH . I 5 HOH B 15 215 66 HOH HOH . I 5 HOH B 16 216 30 HOH HOH . I 5 HOH B 17 217 71 HOH HOH . I 5 HOH B 18 218 16 HOH HOH . I 5 HOH B 19 219 44 HOH HOH . I 5 HOH B 20 220 4 HOH HOH . I 5 HOH B 21 221 13 HOH HOH . I 5 HOH B 22 222 47 HOH HOH . I 5 HOH B 23 223 67 HOH HOH . I 5 HOH B 24 224 41 HOH HOH . I 5 HOH B 25 225 64 HOH HOH . I 5 HOH B 26 226 34 HOH HOH . I 5 HOH B 27 227 63 HOH HOH . I 5 HOH B 28 228 8 HOH HOH . I 5 HOH B 29 229 3 HOH HOH . I 5 HOH B 30 230 54 HOH HOH . I 5 HOH B 31 231 59 HOH HOH . I 5 HOH B 32 232 12 HOH HOH . I 5 HOH B 33 233 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . D 3 14 61.512 40.03 1 69.64 ? P 5GP 101 B 1 HETATM 2 O O1P 5GP . . . D 3 14.328 60.041 40.166 1 62.77 ? O1P 5GP 101 B 1 HETATM 3 O O2P 5GP . . . D 3 13.92 62.235 41.35 1 65.62 ? O2P 5GP 101 B 1 HETATM 4 O O3P 5GP . . . D 3 12.746 61.81 39.066 1 63.06 ? O3P 5GP 101 B 1 HETATM 5 O O5' 5GP . . . D 3 15.249 62.156 39.264 1 56.6 ? O5' 5GP 101 B 1 HETATM 6 C C5' 5GP . . . D 3 16.378 61.319 38.938 1 52.93 ? C5' 5GP 101 B 1 HETATM 7 C C4' 5GP . . . D 3 17.301 62.067 38.009 1 50.4 ? C4' 5GP 101 B 1 HETATM 8 O O4' 5GP . . . D 3 16.52 62.895 37.104 1 45.09 ? O4' 5GP 101 B 1 HETATM 9 C C3' 5GP . . . D 3 18.304 63.013 38.683 1 50.78 ? C3' 5GP 101 B 1 HETATM 10 O O3' 5GP . . . D 3 19.553 63.003 38.004 1 60.91 ? O3' 5GP 101 B 1 HETATM 11 C C2' 5GP . . . D 3 17.597 64.362 38.549 1 46.58 ? C2' 5GP 101 B 1 HETATM 12 O O2' 5GP . . . D 3 18.433 65.488 38.7 1 43.05 ? O2' 5GP 101 B 1 HETATM 13 C C1' 5GP . . . D 3 17.001 64.216 37.154 1 37.29 ? C1' 5GP 101 B 1 HETATM 14 N N9 5GP . . . D 3 15.894 65.129 36.941 1 33.42 ? N9 5GP 101 B 1 HETATM 15 C C8 5GP . . . D 3 14.567 64.902 37.182 1 29.34 ? C8 5GP 101 B 1 HETATM 16 N N7 5GP . . . D 3 13.815 65.944 36.936 1 32.6 ? N7 5GP 101 B 1 HETATM 17 C C5 5GP . . . D 3 14.712 66.92 36.529 1 29.23 ? C5 5GP 101 B 1 HETATM 18 C C6 5GP . . . D 3 14.48 68.253 36.123 1 29.64 ? C6 5GP 101 B 1 HETATM 19 O O6 5GP . . . D 3 13.405 68.856 36.053 1 31.26 ? O6 5GP 101 B 1 HETATM 20 N N1 5GP . . . D 3 15.674 68.893 35.798 1 30.05 ? N1 5GP 101 B 1 HETATM 21 C C2 5GP . . . D 3 16.922 68.329 35.84 1 29.88 ? C2 5GP 101 B 1 HETATM 22 N N2 5GP . . . D 3 17.947 69.113 35.488 1 28.96 ? N2 5GP 101 B 1 HETATM 23 N N3 5GP . . . D 3 17.144 67.072 36.207 1 31.6 ? N3 5GP 101 B 1 HETATM 24 C C4 5GP . . . D 3 15.996 66.434 36.535 1 28.71 ? C4 5GP 101 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 432 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #