data_8SX8
#
_model_server_result.job_id            2scj8C8QNo-tYvXPwEV_Gw 
_model_server_result.datetime_utc      '2024-12-26 23:35:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1401}' 
#
_entry.id    8SX8 
#
_exptl.entry_id    8SX8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              354.481 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SX8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H34 O5' 
_chem_comp.formula_weight    354.481 
_chem_comp.id                XPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Prostaglandin E1' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O15 C15 XPG sing 376 n n 
C18 C17 XPG sing 377 n n 
C18 C19 XPG sing 378 n n 
C20 C19 XPG sing 379 n n 
C16 C17 XPG sing 380 n n 
C16 C15 XPG sing 381 n n 
C15 C14 XPG sing 382 n n 
C14 C13 XPG doub 383 e n 
C13 C12 XPG sing 384 n n 
O11 C11 XPG sing 385 n n 
C11 C12 XPG sing 386 n n 
C11 C10 XPG sing 387 n n 
C12 C8 XPG sing 388 n n 
C8 C9 XPG sing 389 n n 
C8 C7 XPG sing 390 n n 
C10 C9 XPG sing 391 n n 
C9 O9 XPG doub 392 n n 
C7 C6 XPG sing 393 n n 
C6 C5 XPG sing 394 n n 
C5 C4 XPG sing 395 n n 
C4 C3 XPG sing 396 n n 
C3 C2 XPG sing 397 n n 
C2 C1 XPG sing 398 n n 
O1B C1 XPG doub 399 n n 
C1 O1A XPG sing 400 n n 
C20 H1 XPG sing 401 n n 
C20 H2 XPG sing 402 n n 
C20 H3 XPG sing 403 n n 
C19 H4 XPG sing 404 n n 
C19 H5 XPG sing 405 n n 
C18 H6 XPG sing 406 n n 
C18 H7 XPG sing 407 n n 
C17 H8 XPG sing 408 n n 
C17 H9 XPG sing 409 n n 
C16 H10 XPG sing 410 n n 
C16 H11 XPG sing 411 n n 
C15 H12 XPG sing 412 n n 
O15 H13 XPG sing 413 n n 
C14 H14 XPG sing 414 n n 
C13 H15 XPG sing 415 n n 
C12 H16 XPG sing 416 n n 
C11 H17 XPG sing 417 n n 
O11 H18 XPG sing 418 n n 
C10 H19 XPG sing 419 n n 
C10 H20 XPG sing 420 n n 
C8 H21 XPG sing 421 n n 
C7 H22 XPG sing 422 n n 
C7 H23 XPG sing 423 n n 
C6 H24 XPG sing 424 n n 
C6 H25 XPG sing 425 n n 
C5 H26 XPG sing 426 n n 
C5 H27 XPG sing 427 n n 
C4 H28 XPG sing 428 n n 
C4 H29 XPG sing 429 n n 
C3 H30 XPG sing 430 n n 
C3 H31 XPG sing 431 n n 
C2 H32 XPG sing 432 n n 
C2 H33 XPG sing 433 n n 
O1A H34 XPG sing 434 n n 
#
_atom_sites.entry_id                     8SX8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 XPG A 1 1401 1301 XPG XPG . 
C 3 HOH A 1 1501 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 XPG . . . B 2 127.788 126.51 119.089 1 46.19 ? C20 XPG 1401 A 1 
HETATM 2 C C19 XPG . . . B 2 126.788 125.759 119.983 1 46.19 ? C19 XPG 1401 A 1 
HETATM 3 C C18 XPG . . . B 2 127.089 124.25 120.055 1 46.19 ? C18 XPG 1401 A 1 
HETATM 4 C C17 XPG . . . B 2 126.867 123.517 118.707 1 46.19 ? C17 XPG 1401 A 1 
HETATM 5 C C16 XPG . . . B 2 127.015 121.989 118.879 1 46.19 ? C16 XPG 1401 A 1 
HETATM 6 C C15 XPG . . . B 2 126.602 121.173 117.642 1 46.19 ? C15 XPG 1401 A 1 
HETATM 7 O O15 XPG . . . B 2 126.657 119.798 117.961 1 46.19 ? O15 XPG 1401 A 1 
HETATM 8 C C14 XPG . . . B 2 127.459 121.395 116.421 1 46.19 ? C14 XPG 1401 A 1 
HETATM 9 C C13 XPG . . . B 2 128.758 121.722 116.395 1 46.19 ? C13 XPG 1401 A 1 
HETATM 10 C C12 XPG . . . B 2 129.617 121.891 115.151 1 46.19 ? C12 XPG 1401 A 1 
HETATM 11 C C11 XPG . . . B 2 129.004 121.37 113.853 1 46.19 ? C11 XPG 1401 A 1 
HETATM 12 O O11 XPG . . . B 2 129.115 119.962 113.796 1 46.19 ? O11 XPG 1401 A 1 
HETATM 13 C C10 XPG . . . B 2 129.776 122.048 112.723 1 46.19 ? C10 XPG 1401 A 1 
HETATM 14 C C9 XPG . . . B 2 130.261 123.333 113.342 1 46.19 ? C9 XPG 1401 A 1 
HETATM 15 O O9 XPG . . . B 2 130.832 124.212 112.723 1 46.19 ? O9 XPG 1401 A 1 
HETATM 16 C C8 XPG . . . B 2 129.944 123.356 114.83 1 46.19 ? C8 XPG 1401 A 1 
HETATM 17 C C7 XPG . . . B 2 131.121 123.862 115.687 1 46.19 ? C7 XPG 1401 A 1 
HETATM 18 C C6 XPG . . . B 2 131.296 125.389 115.742 1 46.19 ? C6 XPG 1401 A 1 
HETATM 19 C C5 XPG . . . B 2 130.258 126.038 116.672 1 46.19 ? C5 XPG 1401 A 1 
HETATM 20 C C4 XPG . . . B 2 130.584 127.501 116.966 1 46.19 ? C4 XPG 1401 A 1 
HETATM 21 C C3 XPG . . . B 2 131.95 127.648 117.661 1 46.19 ? C3 XPG 1401 A 1 
HETATM 22 C C2 XPG . . . B 2 133.04 128.101 116.675 1 46.19 ? C2 XPG 1401 A 1 
HETATM 23 C C1 XPG . . . B 2 134.437 128.012 117.26 1 46.19 ? C1 XPG 1401 A 1 
HETATM 24 O O1A XPG . . . B 2 135.356 127.748 116.507 1 46.19 ? O1A XPG 1401 A 1 
HETATM 25 O O1B XPG . . . B 2 134.614 128.21 118.448 1 46.19 ? O1B XPG 1401 A 1 
HETATM 26 H H1 XPG . . . B 2 128.672 126.348 119.365 1 46.19 ? H1 XPG 1401 A 1 
HETATM 27 H H2 XPG . . . B 2 127.633 127.437 119.133 1 46.19 ? H2 XPG 1401 A 1 
HETATM 28 H H3 XPG . . . B 2 127.698 126.248 118.19 1 46.19 ? H3 XPG 1401 A 1 
HETATM 29 H H4 XPG . . . B 2 125.913 125.896 119.666 1 46.19 ? H4 XPG 1401 A 1 
HETATM 30 H H5 XPG . . . B 2 126.823 126.119 120.851 1 46.19 ? H5 XPG 1401 A 1 
HETATM 31 H H6 XPG . . . B 2 127.975 124.119 120.343 1 46.19 ? H6 XPG 1401 A 1 
HETATM 32 H H7 XPG . . . B 2 126.532 123.87 120.71 1 46.19 ? H7 XPG 1401 A 1 
HETATM 33 H H8 XPG . . . B 2 126.004 123.71 118.384 1 46.19 ? H8 XPG 1401 A 1 
HETATM 34 H H9 XPG . . . B 2 127.482 123.823 118.064 1 46.19 ? H9 XPG 1401 A 1 
HETATM 35 H H10 XPG . . . B 2 127.904 121.79 119.116 1 46.19 ? H10 XPG 1401 A 1 
HETATM 36 H H11 XPG . . . B 2 126.477 121.717 119.6 1 46.19 ? H11 XPG 1401 A 1 
HETATM 37 H H12 XPG . . . B 2 125.715 121.401 117.426 1 46.19 ? H12 XPG 1401 A 1 
HETATM 38 H H13 XPG . . . B 2 127.451 119.658 118.176 1 46.19 ? H13 XPG 1401 A 1 
HETATM 39 H H14 XPG . . . B 2 126.956 121.322 115.617 1 46.19 ? H14 XPG 1401 A 1 
HETATM 40 H H15 XPG . . . B 2 129.254 121.771 117.207 1 46.19 ? H15 XPG 1401 A 1 
HETATM 41 H H16 XPG . . . B 2 130.428 121.432 115.283 1 46.19 ? H16 XPG 1401 A 1 
HETATM 42 H H17 XPG . . . B 2 128.107 121.645 113.786 1 46.19 ? H17 XPG 1401 A 1 
HETATM 43 H H18 XPG . . . B 2 128.678 119.664 114.439 1 46.19 ? H18 XPG 1401 A 1 
HETATM 44 H H19 XPG . . . B 2 130.519 121.538 112.453 1 46.19 ? H19 XPG 1401 A 1 
HETATM 45 H H20 XPG . . . B 2 129.223 122.227 111.984 1 46.19 ? H20 XPG 1401 A 1 
HETATM 46 H H21 XPG . . . B 2 129.176 123.883 114.959 1 46.19 ? H21 XPG 1401 A 1 
HETATM 47 H H22 XPG . . . B 2 131.025 123.544 116.568 1 46.19 ? H22 XPG 1401 A 1 
HETATM 48 H H23 XPG . . . B 2 131.916 123.475 115.365 1 46.19 ? H23 XPG 1401 A 1 
HETATM 49 H H24 XPG . . . B 2 132.165 125.533 116.07 1 46.19 ? H24 XPG 1401 A 1 
HETATM 50 H H25 XPG . . . B 2 131.257 125.774 114.884 1 46.19 ? H25 XPG 1401 A 1 
HETATM 51 H H26 XPG . . . B 2 129.404 125.983 116.282 1 46.19 ? H26 XPG 1401 A 1 
HETATM 52 H H27 XPG . . . B 2 130.221 125.564 117.484 1 46.19 ? H27 XPG 1401 A 1 
HETATM 53 H H28 XPG . . . B 2 130.558 128.007 116.173 1 46.19 ? H28 XPG 1401 A 1 
HETATM 54 H H29 XPG . . . B 2 129.917 127.854 117.527 1 46.19 ? H29 XPG 1401 A 1 
HETATM 55 H H30 XPG . . . B 2 131.877 128.29 118.345 1 46.19 ? H30 XPG 1401 A 1 
HETATM 56 H H31 XPG . . . B 2 132.199 126.843 118.078 1 46.19 ? H31 XPG 1401 A 1 
HETATM 57 H H32 XPG . . . B 2 133.012 127.602 115.88 1 46.19 ? H32 XPG 1401 A 1 
HETATM 58 H H33 XPG . . . B 2 132.883 128.997 116.43 1 46.19 ? H33 XPG 1401 A 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           58 
#