data_8SX8 # _model_server_result.job_id 3H1tCXmLsMVghBBfsbCW0g _model_server_result.datetime_utc '2024-12-06 02:48:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 8SX8 # _exptl.entry_id 8SX8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 354.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SX8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H34 O5' _chem_comp.formula_weight 354.481 _chem_comp.id XPG _chem_comp.mon_nstd_flag . _chem_comp.name '7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Prostaglandin E1' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C15 XPG sing 376 n n C18 C17 XPG sing 377 n n C18 C19 XPG sing 378 n n C20 C19 XPG sing 379 n n C16 C17 XPG sing 380 n n C16 C15 XPG sing 381 n n C15 C14 XPG sing 382 n n C14 C13 XPG doub 383 e n C13 C12 XPG sing 384 n n O11 C11 XPG sing 385 n n C11 C12 XPG sing 386 n n C11 C10 XPG sing 387 n n C12 C8 XPG sing 388 n n C8 C9 XPG sing 389 n n C8 C7 XPG sing 390 n n C10 C9 XPG sing 391 n n C9 O9 XPG doub 392 n n C7 C6 XPG sing 393 n n C6 C5 XPG sing 394 n n C5 C4 XPG sing 395 n n C4 C3 XPG sing 396 n n C3 C2 XPG sing 397 n n C2 C1 XPG sing 398 n n O1B C1 XPG doub 399 n n C1 O1A XPG sing 400 n n C20 H1 XPG sing 401 n n C20 H2 XPG sing 402 n n C20 H3 XPG sing 403 n n C19 H4 XPG sing 404 n n C19 H5 XPG sing 405 n n C18 H6 XPG sing 406 n n C18 H7 XPG sing 407 n n C17 H8 XPG sing 408 n n C17 H9 XPG sing 409 n n C16 H10 XPG sing 410 n n C16 H11 XPG sing 411 n n C15 H12 XPG sing 412 n n O15 H13 XPG sing 413 n n C14 H14 XPG sing 414 n n C13 H15 XPG sing 415 n n C12 H16 XPG sing 416 n n C11 H17 XPG sing 417 n n O11 H18 XPG sing 418 n n C10 H19 XPG sing 419 n n C10 H20 XPG sing 420 n n C8 H21 XPG sing 421 n n C7 H22 XPG sing 422 n n C7 H23 XPG sing 423 n n C6 H24 XPG sing 424 n n C6 H25 XPG sing 425 n n C5 H26 XPG sing 426 n n C5 H27 XPG sing 427 n n C4 H28 XPG sing 428 n n C4 H29 XPG sing 429 n n C3 H30 XPG sing 430 n n C3 H31 XPG sing 431 n n C2 H32 XPG sing 432 n n C2 H33 XPG sing 433 n n O1A H34 XPG sing 434 n n # _atom_sites.entry_id 8SX8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XPG A 1 1401 1301 XPG XPG . C 3 HOH A 1 1501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 XPG . . . B 2 127.788 126.51 119.089 1 46.19 ? C20 XPG 1401 A 1 HETATM 2 C C19 XPG . . . B 2 126.788 125.759 119.983 1 46.19 ? C19 XPG 1401 A 1 HETATM 3 C C18 XPG . . . B 2 127.089 124.25 120.055 1 46.19 ? C18 XPG 1401 A 1 HETATM 4 C C17 XPG . . . B 2 126.867 123.517 118.707 1 46.19 ? C17 XPG 1401 A 1 HETATM 5 C C16 XPG . . . B 2 127.015 121.989 118.879 1 46.19 ? C16 XPG 1401 A 1 HETATM 6 C C15 XPG . . . B 2 126.602 121.173 117.642 1 46.19 ? C15 XPG 1401 A 1 HETATM 7 O O15 XPG . . . B 2 126.657 119.798 117.961 1 46.19 ? O15 XPG 1401 A 1 HETATM 8 C C14 XPG . . . B 2 127.459 121.395 116.421 1 46.19 ? C14 XPG 1401 A 1 HETATM 9 C C13 XPG . . . B 2 128.758 121.722 116.395 1 46.19 ? C13 XPG 1401 A 1 HETATM 10 C C12 XPG . . . B 2 129.617 121.891 115.151 1 46.19 ? C12 XPG 1401 A 1 HETATM 11 C C11 XPG . . . B 2 129.004 121.37 113.853 1 46.19 ? C11 XPG 1401 A 1 HETATM 12 O O11 XPG . . . B 2 129.115 119.962 113.796 1 46.19 ? O11 XPG 1401 A 1 HETATM 13 C C10 XPG . . . B 2 129.776 122.048 112.723 1 46.19 ? C10 XPG 1401 A 1 HETATM 14 C C9 XPG . . . B 2 130.261 123.333 113.342 1 46.19 ? C9 XPG 1401 A 1 HETATM 15 O O9 XPG . . . B 2 130.832 124.212 112.723 1 46.19 ? O9 XPG 1401 A 1 HETATM 16 C C8 XPG . . . B 2 129.944 123.356 114.83 1 46.19 ? C8 XPG 1401 A 1 HETATM 17 C C7 XPG . . . B 2 131.121 123.862 115.687 1 46.19 ? C7 XPG 1401 A 1 HETATM 18 C C6 XPG . . . B 2 131.296 125.389 115.742 1 46.19 ? C6 XPG 1401 A 1 HETATM 19 C C5 XPG . . . B 2 130.258 126.038 116.672 1 46.19 ? C5 XPG 1401 A 1 HETATM 20 C C4 XPG . . . B 2 130.584 127.501 116.966 1 46.19 ? C4 XPG 1401 A 1 HETATM 21 C C3 XPG . . . B 2 131.95 127.648 117.661 1 46.19 ? C3 XPG 1401 A 1 HETATM 22 C C2 XPG . . . B 2 133.04 128.101 116.675 1 46.19 ? C2 XPG 1401 A 1 HETATM 23 C C1 XPG . . . B 2 134.437 128.012 117.26 1 46.19 ? C1 XPG 1401 A 1 HETATM 24 O O1A XPG . . . B 2 135.356 127.748 116.507 1 46.19 ? O1A XPG 1401 A 1 HETATM 25 O O1B XPG . . . B 2 134.614 128.21 118.448 1 46.19 ? O1B XPG 1401 A 1 HETATM 26 H H1 XPG . . . B 2 128.672 126.348 119.365 1 46.19 ? H1 XPG 1401 A 1 HETATM 27 H H2 XPG . . . B 2 127.633 127.437 119.133 1 46.19 ? H2 XPG 1401 A 1 HETATM 28 H H3 XPG . . . B 2 127.698 126.248 118.19 1 46.19 ? H3 XPG 1401 A 1 HETATM 29 H H4 XPG . . . B 2 125.913 125.896 119.666 1 46.19 ? H4 XPG 1401 A 1 HETATM 30 H H5 XPG . . . B 2 126.823 126.119 120.851 1 46.19 ? H5 XPG 1401 A 1 HETATM 31 H H6 XPG . . . B 2 127.975 124.119 120.343 1 46.19 ? H6 XPG 1401 A 1 HETATM 32 H H7 XPG . . . B 2 126.532 123.87 120.71 1 46.19 ? H7 XPG 1401 A 1 HETATM 33 H H8 XPG . . . B 2 126.004 123.71 118.384 1 46.19 ? H8 XPG 1401 A 1 HETATM 34 H H9 XPG . . . B 2 127.482 123.823 118.064 1 46.19 ? H9 XPG 1401 A 1 HETATM 35 H H10 XPG . . . B 2 127.904 121.79 119.116 1 46.19 ? H10 XPG 1401 A 1 HETATM 36 H H11 XPG . . . B 2 126.477 121.717 119.6 1 46.19 ? H11 XPG 1401 A 1 HETATM 37 H H12 XPG . . . B 2 125.715 121.401 117.426 1 46.19 ? H12 XPG 1401 A 1 HETATM 38 H H13 XPG . . . B 2 127.451 119.658 118.176 1 46.19 ? H13 XPG 1401 A 1 HETATM 39 H H14 XPG . . . B 2 126.956 121.322 115.617 1 46.19 ? H14 XPG 1401 A 1 HETATM 40 H H15 XPG . . . B 2 129.254 121.771 117.207 1 46.19 ? H15 XPG 1401 A 1 HETATM 41 H H16 XPG . . . B 2 130.428 121.432 115.283 1 46.19 ? H16 XPG 1401 A 1 HETATM 42 H H17 XPG . . . B 2 128.107 121.645 113.786 1 46.19 ? H17 XPG 1401 A 1 HETATM 43 H H18 XPG . . . B 2 128.678 119.664 114.439 1 46.19 ? H18 XPG 1401 A 1 HETATM 44 H H19 XPG . . . B 2 130.519 121.538 112.453 1 46.19 ? H19 XPG 1401 A 1 HETATM 45 H H20 XPG . . . B 2 129.223 122.227 111.984 1 46.19 ? H20 XPG 1401 A 1 HETATM 46 H H21 XPG . . . B 2 129.176 123.883 114.959 1 46.19 ? H21 XPG 1401 A 1 HETATM 47 H H22 XPG . . . B 2 131.025 123.544 116.568 1 46.19 ? H22 XPG 1401 A 1 HETATM 48 H H23 XPG . . . B 2 131.916 123.475 115.365 1 46.19 ? H23 XPG 1401 A 1 HETATM 49 H H24 XPG . . . B 2 132.165 125.533 116.07 1 46.19 ? H24 XPG 1401 A 1 HETATM 50 H H25 XPG . . . B 2 131.257 125.774 114.884 1 46.19 ? H25 XPG 1401 A 1 HETATM 51 H H26 XPG . . . B 2 129.404 125.983 116.282 1 46.19 ? H26 XPG 1401 A 1 HETATM 52 H H27 XPG . . . B 2 130.221 125.564 117.484 1 46.19 ? H27 XPG 1401 A 1 HETATM 53 H H28 XPG . . . B 2 130.558 128.007 116.173 1 46.19 ? H28 XPG 1401 A 1 HETATM 54 H H29 XPG . . . B 2 129.917 127.854 117.527 1 46.19 ? H29 XPG 1401 A 1 HETATM 55 H H30 XPG . . . B 2 131.877 128.29 118.345 1 46.19 ? H30 XPG 1401 A 1 HETATM 56 H H31 XPG . . . B 2 132.199 126.843 118.078 1 46.19 ? H31 XPG 1401 A 1 HETATM 57 H H32 XPG . . . B 2 133.012 127.602 115.88 1 46.19 ? H32 XPG 1401 A 1 HETATM 58 H H33 XPG . . . B 2 132.883 128.997 116.43 1 46.19 ? H33 XPG 1401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 58 #