data_8SXB # _model_server_result.job_id oz0wNLWbseoiromJnkdebw _model_server_result.datetime_utc '2024-12-26 20:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2701}' # _entry.id 8SXB # _exptl.entry_id 8SXB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 352.465 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SXB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H32 O5' _chem_comp.formula_weight 352.465 _chem_comp.id P2E _chem_comp.mon_nstd_flag . _chem_comp.name '(Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Prostaglandin E2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 P2E sing 237 n n C2 C1 P2E sing 238 n n C3 C4 P2E sing 239 n n C4 C5 P2E sing 240 n n C5 C6 P2E doub 241 n n C6 C7 P2E sing 242 n n C7 C8 P2E sing 243 n n C8 C9 P2E sing 244 n n C8 C12 P2E sing 245 n n C9 O3 P2E doub 246 n n C9 C10 P2E sing 247 z n C12 C11 P2E sing 248 n n C12 C13 P2E sing 249 n n C11 O4 P2E sing 250 n n C11 C10 P2E sing 251 n n C13 C14 P2E doub 252 n n C14 C15 P2E sing 253 n n C15 O5 P2E sing 254 n n C15 C16 P2E sing 255 n n C16 C17 P2E sing 256 n n C17 C18 P2E sing 257 n n C18 C19 P2E sing 258 n n C19 C20 P2E sing 259 n n O1 C1 P2E doub 260 n n C1 O2 P2E sing 261 n n C2 H2 P2E sing 262 n n C2 H2A P2E sing 263 n n C3 H3 P2E sing 264 n n C3 H3A P2E sing 265 n n C4 H4 P2E sing 266 n n C4 H4A P2E sing 267 n n C5 H5 P2E sing 268 e n C6 H6 P2E sing 269 n n C7 H7 P2E sing 270 n n C7 H7A P2E sing 271 n n C8 H8 P2E sing 272 n n C12 H12 P2E sing 273 n n C11 H11 P2E sing 274 n n O4 HO4 P2E sing 275 n n C10 H10 P2E sing 276 n n C10 H10A P2E sing 277 n n C13 H13 P2E sing 278 n n C14 H14 P2E sing 279 n n C15 H15 P2E sing 280 n n O5 HO5 P2E sing 281 n n C16 H16 P2E sing 282 n n C16 H16A P2E sing 283 n n C17 H17 P2E sing 284 n n C17 H17A P2E sing 285 n n C18 H18 P2E sing 286 n n C18 H18A P2E sing 287 n n C19 H19 P2E sing 288 n n C19 H19A P2E sing 289 n n C20 H20 P2E sing 290 n n C20 H20A P2E sing 291 n n C20 H20B P2E sing 292 n n O2 HO2 P2E sing 293 n n # _atom_sites.entry_id 8SXB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P2E A 1 2701 2701 P2E P2E . C 3 HOH A 1 2801 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 P2E . . . B 2 133.164 128.152 116.111 1 39.31 ? C2 P2E 2701 A 1 HETATM 2 C C3 P2E . . . B 2 131.921 128.439 116.983 1 39.2 ? C3 P2E 2701 A 1 HETATM 3 C C4 P2E . . . B 2 130.622 127.964 116.298 1 43.88 ? C4 P2E 2701 A 1 HETATM 4 C C5 P2E . . . B 2 130.617 126.472 116.073 1 39.05 ? C5 P2E 2701 A 1 HETATM 5 C C6 P2E . . . B 2 131.095 125.876 114.984 1 38.68 ? C6 P2E 2701 A 1 HETATM 6 C C7 P2E . . . B 2 131.172 124.383 114.837 1 44.65 ? C7 P2E 2701 A 1 HETATM 7 C C8 P2E . . . B 2 130.277 123.845 113.71 1 39.6 ? C8 P2E 2701 A 1 HETATM 8 C C9 P2E . . . B 2 130.892 123.889 112.32 1 42.25 ? C9 P2E 2701 A 1 HETATM 9 O O3 P2E . . . B 2 131.496 124.83 111.846 1 44.71 ? O3 P2E 2701 A 1 HETATM 10 C C12 P2E . . . B 2 129.919 122.365 113.906 1 38.78 ? C12 P2E 2701 A 1 HETATM 11 C C11 P2E . . . B 2 129.59 121.908 112.482 1 48.63 ? C11 P2E 2701 A 1 HETATM 12 O O4 P2E . . . B 2 129.586 120.496 112.372 1 50.81 ? O4 P2E 2701 A 1 HETATM 13 C C10 P2E . . . B 2 130.627 122.594 111.587 1 49.07 ? C10 P2E 2701 A 1 HETATM 14 C C13 P2E . . . B 2 128.73 122.203 114.815 1 38.48 ? C13 P2E 2701 A 1 HETATM 15 C C14 P2E . . . B 2 128.653 121.402 115.871 1 38.69 ? C14 P2E 2701 A 1 HETATM 16 C C15 P2E . . . B 2 127.507 121.446 116.836 1 39.96 ? C15 P2E 2701 A 1 HETATM 17 O O5 P2E . . . B 2 127.532 120.293 117.662 1 38.65 ? O5 P2E 2701 A 1 HETATM 18 C C16 P2E . . . B 2 127.652 122.731 117.651 1 45.46 ? C16 P2E 2701 A 1 HETATM 19 C C17 P2E . . . B 2 126.53 123.001 118.663 1 44.17 ? C17 P2E 2701 A 1 HETATM 20 C C18 P2E . . . B 2 126.828 124.227 119.555 1 40.42 ? C18 P2E 2701 A 1 HETATM 21 C C19 P2E . . . B 2 127.274 125.49 118.78 1 40.24 ? C19 P2E 2701 A 1 HETATM 22 C C20 P2E . . . B 2 127.381 126.707 119.698 1 47.72 ? C20 P2E 2701 A 1 HETATM 23 O O1 P2E . . . B 2 135.483 128.32 116.074 1 46.85 ? O1 P2E 2701 A 1 HETATM 24 C C1 P2E . . . B 2 134.485 128.606 116.693 1 44.73 ? C1 P2E 2701 A 1 HETATM 25 O O2 P2E . . . B 2 134.529 129.229 117.732 1 40.11 ? O2 P2E 2701 A 1 HETATM 26 H H2 P2E . . . B 2 133.059 128.559 115.27 1 39.81 ? H2 P2E 2701 A 1 HETATM 27 H H2A P2E . . . B 2 133.245 127.227 115.963 1 39.13 ? H2A P2E 2701 A 1 HETATM 28 H H3 P2E . . . B 2 132.011 128.014 117.817 1 40.01 ? H3 P2E 2701 A 1 HETATM 29 H H3A P2E . . . B 2 131.865 129.363 117.15 1 40.6 ? H3A P2E 2701 A 1 HETATM 30 H H4 P2E . . . B 2 129.885 128.209 116.829 1 41.54 ? H4 P2E 2701 A 1 HETATM 31 H H4A P2E . . . B 2 130.521 128.417 115.479 1 40.87 ? H4A P2E 2701 A 1 HETATM 32 H H5 P2E . . . B 2 130.294 125.954 116.804 1 39.86 ? H5 P2E 2701 A 1 HETATM 33 H H6 P2E . . . B 2 131.48 126.385 114.277 1 40.16 ? H6 P2E 2701 A 1 HETATM 34 H H7 P2E . . . B 2 130.916 123.98 115.648 1 41.56 ? H7 P2E 2701 A 1 HETATM 35 H H7A P2E . . . B 2 132.061 124.122 114.679 1 41.45 ? H7A P2E 2701 A 1 HETATM 36 H H8 P2E . . . B 2 129.485 124.351 113.679 1 41.08 ? H8 P2E 2701 A 1 HETATM 37 H H12 P2E . . . B 2 130.665 121.89 114.225 1 40.01 ? H12 P2E 2701 A 1 HETATM 38 H H11 P2E . . . B 2 128.743 122.245 112.253 1 41.59 ? H11 P2E 2701 A 1 HETATM 39 H HO4 P2E . . . B 2 129.055 120.219 112.951 1 41.12 ? HO4 P2E 2701 A 1 HETATM 40 H H10 P2E . . . B 2 130.296 122.754 110.722 1 41.79 ? H10 P2E 2701 A 1 HETATM 41 H H10A P2E . . . B 2 131.424 122.096 111.542 1 41.18 ? H10A P2E 2701 A 1 HETATM 42 H H13 P2E . . . B 2 127.953 122.684 114.547 1 40.78 ? H13 P2E 2701 A 1 HETATM 43 H H14 P2E . . . B 2 129.428 120.944 116.18 1 40.51 ? H14 P2E 2701 A 1 HETATM 44 H H15 P2E . . . B 2 126.696 121.478 116.361 1 40.46 ? H15 P2E 2701 A 1 HETATM 45 H HO5 P2E . . . B 2 127.988 120.461 118.339 1 41.15 ? HO5 P2E 2701 A 1 HETATM 46 H H16 P2E . . . B 2 128.476 122.717 118.103 1 41.72 ? H16 P2E 2701 A 1 HETATM 47 H H16A P2E . . . B 2 127.693 123.449 117.045 1 40.98 ? H16A P2E 2701 A 1 HETATM 48 H H17 P2E . . . B 2 125.719 123.128 118.202 1 41.55 ? H17 P2E 2701 A 1 HETATM 49 H H17A P2E . . . B 2 126.406 122.247 119.212 1 41.18 ? H17A P2E 2701 A 1 HETATM 50 H H18 P2E . . . B 2 126.056 124.425 120.055 1 41.16 ? H18 P2E 2701 A 1 HETATM 51 H H18A P2E . . . B 2 127.495 123.999 120.177 1 40.78 ? H18A P2E 2701 A 1 HETATM 52 H H19 P2E . . . B 2 128.114 125.35 118.382 1 39.74 ? H19 P2E 2701 A 1 HETATM 53 H H19A P2E . . . B 2 126.665 125.674 118.087 1 40.69 ? H19A P2E 2701 A 1 HETATM 54 H H20 P2E . . . B 2 126.547 126.92 120.078 1 41.9 ? H20 P2E 2701 A 1 HETATM 55 H H20A P2E . . . B 2 127.684 127.46 119.224 1 41.22 ? H20A P2E 2701 A 1 HETATM 56 H H20B P2E . . . B 2 127.986 126.547 120.401 1 42.22 ? H20B P2E 2701 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 56 #