data_8SXD # _model_server_result.job_id R979UJdXk64xCfHyMbQFkQ _model_server_result.datetime_utc '2025-01-02 17:01:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8SXD # _exptl.entry_id 8SXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.125 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SXD _cell.length_a 130.72 _cell.length_b 130.72 _cell.length_c 130.72 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 192 A ASP 192 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A OD2 ASP 192 A ASP 192 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 A OE2 GLU 196 A GLU 196 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc4 A OE1 GLU 228 A GLU 228 1_555 C MG MG . A MG 402 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc5 A OE1 GLU 232 A GLU 232 1_555 C MG MG . A MG 402 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc6 B O07 WXU . A WXU 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc7 B O01 WXU . A WXU 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc8 B O09 WXU . A WXU 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc9 C MG MG . A MG 402 1_555 H O HOH . A HOH 503 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc10 C MG MG . A MG 402 1_555 H O HOH . A HOH 506 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc11 D MG MG . A MG 403 1_555 H O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc12 D MG MG . A MG 403 1_555 H O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'C6 H6 N2 O' _chem_comp.formula_weight 122.125 _chem_comp.id NCA _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NCA doub 237 n y N1 C6 NCA sing 238 n y C2 C3 NCA sing 239 n y C2 H2 NCA sing 240 n n C3 C4 NCA doub 241 n y C3 C7 NCA sing 242 n n C4 C5 NCA sing 243 n y C4 H4 NCA sing 244 n n C5 C6 NCA doub 245 n y C5 H5 NCA sing 246 n n C6 H6 NCA sing 247 n n C7 O7 NCA doub 248 n n C7 N7 NCA sing 249 n n N7 HN71 NCA sing 250 n n N7 HN72 NCA sing 251 n n # _atom_sites.entry_id 8SXD _atom_sites.fract_transf_matrix[1][1] 0.00765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WXU A 1 401 401 WXU LIG . C 3 MG A 1 402 341 MG MG . D 3 MG A 1 403 342 MG MG . E 4 NCA A 1 404 1 NCA NCA . F 5 NDP A 1 405 2 NDP NDP . G 6 CL A 1 406 2 CL CL . H 7 HOH A 1 501 8 HOH HOH . H 7 HOH A 2 502 24 HOH HOH . H 7 HOH A 3 503 4 HOH HOH . H 7 HOH A 4 504 22 HOH HOH . H 7 HOH A 5 505 27 HOH HOH . H 7 HOH A 6 506 1 HOH HOH . H 7 HOH A 7 507 10 HOH HOH . H 7 HOH A 8 508 23 HOH HOH . H 7 HOH A 9 509 5 HOH HOH . H 7 HOH A 10 510 9 HOH HOH . H 7 HOH A 11 511 26 HOH HOH . H 7 HOH A 12 512 6 HOH HOH . H 7 HOH A 13 513 12 HOH HOH . H 7 HOH A 14 514 29 HOH HOH . H 7 HOH A 15 515 11 HOH HOH . H 7 HOH A 16 516 16 HOH HOH . H 7 HOH A 17 517 30 HOH HOH . H 7 HOH A 18 518 17 HOH HOH . H 7 HOH A 19 519 31 HOH HOH . H 7 HOH A 20 520 2 HOH HOH . H 7 HOH A 21 521 15 HOH HOH . H 7 HOH A 22 522 3 HOH HOH . H 7 HOH A 23 523 25 HOH HOH . H 7 HOH A 24 524 28 HOH HOH . H 7 HOH A 25 525 39 HOH HOH . H 7 HOH A 26 526 20 HOH HOH . H 7 HOH A 27 527 35 HOH HOH . H 7 HOH A 28 528 33 HOH HOH . H 7 HOH A 29 529 21 HOH HOH . H 7 HOH A 30 530 18 HOH HOH . H 7 HOH A 31 531 32 HOH HOH . H 7 HOH A 32 532 38 HOH HOH . H 7 HOH A 33 533 7 HOH HOH . H 7 HOH A 34 534 36 HOH HOH . H 7 HOH A 35 535 34 HOH HOH . H 7 HOH A 36 536 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCA . A . E 4 43.295 6.112 -16.001 0.6 102.68 ? N1 NCA 404 A 1 HETATM 2 C C2 NCA . A . E 4 43.117 5.434 -14.871 0.6 104.26 ? C2 NCA 404 A 1 HETATM 3 C C3 NCA . A . E 4 42.954 4.049 -14.816 0.6 102.45 ? C3 NCA 404 A 1 HETATM 4 C C4 NCA . A . E 4 42.974 3.332 -16.009 0.6 101.83 ? C4 NCA 404 A 1 HETATM 5 C C5 NCA . A . E 4 43.16 4.026 -17.191 0.6 100.92 ? C5 NCA 404 A 1 HETATM 6 C C6 NCA . A . E 4 43.313 5.411 -17.131 0.6 102.38 ? C6 NCA 404 A 1 HETATM 7 C C7 NCA . A . E 4 42.753 3.304 -13.541 0.6 102.61 ? C7 NCA 404 A 1 HETATM 8 O O7 NCA . A . E 4 42.876 3.875 -12.473 0.6 101.38 ? O7 NCA 404 A 1 HETATM 9 N N7 NCA . A . E 4 42.431 2.002 -13.661 0.6 105.16 ? N7 NCA 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #