data_8SXL
#
_model_server_result.job_id            YeoUUB7jae8bc1y_CqiTVA 
_model_server_result.datetime_utc      '2024-11-23 01:15:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sxl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    8SXL 
#
_exptl.entry_id    8SXL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8SXL 
_cell.length_a            43.838 
_cell.length_b            43.838 
_cell.length_c            82.845 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SXL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' TLN 1 A TLN 1 1_555 A P TLN 2 A TLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
covale ? covale2 A O3' TLN 2 A TLN 2 1_555 A P LCA 3 A LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? 
covale ? covale3 A O3' LCA 3 A LCA 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? 
covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? 
covale ? covale5 B O3' TLN 1 B TLN 1 1_555 B P TLN 2 B TLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? 
covale ? covale6 B O3' TLN 2 B TLN 2 1_555 B P LCA 3 B LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 ? 
covale ? covale7 B O3' LCA 3 B LCA 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? 
covale ? covale8 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? 
hydrog WATSON-CRICK hydrog1 A N1 LCA 3 A LCA 3 1_555 B N3 U 14 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N6 LCA 3 A LCA 3 1_555 B O4 U 14 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N3 C 13 A C 13 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N4 C 13 A C 13 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O2 C 13 A C 13 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N3 U 14 A U 14 1_555 B N1 LCA 3 B LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A O4 U 14 A U 14 1_555 B N6 LCA 3 B LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 40 n n 
P O2P AMP sing 41 n n 
P O3P AMP sing 42 n n 
P O5' AMP sing 43 n n 
O2P HOP2 AMP sing 44 n n 
O3P HOP3 AMP sing 45 n n 
O5' C5' AMP sing 46 n n 
C5' C4' AMP sing 47 n n 
C5' "H5'1" AMP sing 48 n n 
C5' "H5'2" AMP sing 49 n n 
C4' O4' AMP sing 50 n n 
C4' C3' AMP sing 51 n n 
C4' H4' AMP sing 52 n n 
O4' C1' AMP sing 53 n n 
C3' O3' AMP sing 54 n n 
C3' C2' AMP sing 55 n n 
C3' H3' AMP sing 56 n n 
O3' HO3' AMP sing 57 n n 
C2' O2' AMP sing 58 n n 
C2' C1' AMP sing 59 n n 
C2' H2' AMP sing 60 n n 
O2' HO2' AMP sing 61 n n 
C1' N9 AMP sing 62 n n 
C1' H1' AMP sing 63 n n 
N9 C8 AMP sing 64 n y 
N9 C4 AMP sing 65 n y 
C8 N7 AMP doub 66 n y 
C8 H8 AMP sing 67 n n 
N7 C5 AMP sing 68 n y 
C5 C6 AMP sing 69 n y 
C5 C4 AMP doub 70 n y 
C6 N6 AMP sing 71 n n 
C6 N1 AMP doub 72 n y 
N6 HN61 AMP sing 73 n n 
N6 HN62 AMP sing 74 n n 
N1 C2 AMP sing 75 n y 
C2 N3 AMP doub 76 n y 
C2 H2 AMP sing 77 n n 
N3 C4 AMP sing 78 n y 
#
_atom_sites.entry_id                     8SXL 
_atom_sites.fract_transf_matrix[1][1]    0.022811 
_atom_sites.fract_transf_matrix[1][2]    0.01317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02634 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 101 1 AMP A . 
D 2 AMP B 1 101 2 AMP A . 
E 2 AMP B 1 102 3 AMP A . 
F 3 HOH A 1 201 7 HOH HOH . 
F 3 HOH A 2 202 12 HOH HOH . 
F 3 HOH A 3 203 13 HOH HOH . 
F 3 HOH A 4 204 10 HOH HOH . 
F 3 HOH A 5 205 14 HOH HOH . 
F 3 HOH A 6 206 4 HOH HOH . 
F 3 HOH A 7 207 2 HOH HOH . 
F 3 HOH A 8 208 8 HOH HOH . 
F 3 HOH A 9 209 5 HOH HOH . 
F 3 HOH A 10 210 3 HOH HOH . 
F 3 HOH A 11 211 9 HOH HOH . 
G 3 HOH B 1 201 18 HOH HOH . 
G 3 HOH B 2 202 11 HOH HOH . 
G 3 HOH B 3 203 20 HOH HOH . 
G 3 HOH B 4 204 21 HOH HOH . 
G 3 HOH B 5 205 19 HOH HOH . 
G 3 HOH B 6 206 16 HOH HOH . 
G 3 HOH B 7 207 17 HOH HOH . 
G 3 HOH B 8 208 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . D 2 9.077 -5.446 34.971 1 68.94 ? P AMP 101 B 1 
HETATM 2 O O1P AMP . . . D 2 9.695 -5.853 33.564 1 72.64 ? O1P AMP 101 B 1 
HETATM 3 O O2P AMP . . . D 2 9.111 -4.005 35.299 1 77.02 ? O2P AMP 101 B 1 
HETATM 4 O O3P AMP . . . D 2 7.833 -6.11 35.303 1 80.5 ? O3P AMP 101 B 1 
HETATM 5 O O5' AMP . . . D 2 10.177 -6.098 36.002 1 58.42 ? O5' AMP 101 B 1 
HETATM 6 C C5' AMP . . . D 2 10.01 -6.468 37.356 1 51.81 ? C5' AMP 101 B 1 
HETATM 7 C C4' AMP . . . D 2 10.797 -7.761 37.625 1 46.7 ? C4' AMP 101 B 1 
HETATM 8 O O4' AMP . . . D 2 11.904 -8.2 36.709 1 45.15 ? O4' AMP 101 B 1 
HETATM 9 C C3' AMP . . . D 2 11.579 -7.547 38.937 1 48.57 ? C3' AMP 101 B 1 
HETATM 10 O O3' AMP . . . D 2 10.611 -7.498 39.997 1 50.34 ? O3' AMP 101 B 1 
HETATM 11 C C2' AMP . . . D 2 12.49 -8.765 38.948 1 43.9 ? C2' AMP 101 B 1 
HETATM 12 O O2' AMP . . . D 2 11.69 -9.909 39.122 1 46.02 ? O2' AMP 101 B 1 
HETATM 13 C C1' AMP . . . D 2 13 -8.738 37.492 1 43.67 ? C1' AMP 101 B 1 
HETATM 14 N N9 AMP . . . D 2 14.2 -7.895 37.3 1 31.66 ? N9 AMP 101 B 1 
HETATM 15 C C8 AMP . . . D 2 14.343 -6.535 37.192 1 28.39 ? C8 AMP 101 B 1 
HETATM 16 N N7 AMP . . . D 2 15.577 -6.146 36.992 1 32.64 ? N7 AMP 101 B 1 
HETATM 17 C C5 AMP . . . D 2 16.298 -7.33 36.957 1 31.54 ? C5 AMP 101 B 1 
HETATM 18 C C6 AMP . . . D 2 17.663 -7.603 36.746 1 35.39 ? C6 AMP 101 B 1 
HETATM 19 N N6 AMP . . . D 2 18.584 -6.661 36.579 1 35.29 ? N6 AMP 101 B 1 
HETATM 20 N N1 AMP . . . D 2 18.062 -8.894 36.798 1 32.4 ? N1 AMP 101 B 1 
HETATM 21 C C2 AMP . . . D 2 17.135 -9.838 36.98 1 33.05 ? C2 AMP 101 B 1 
HETATM 22 N N3 AMP . . . D 2 15.821 -9.707 37.178 1 31.59 ? N3 AMP 101 B 1 
HETATM 23 C C4 AMP . . . D 2 15.471 -8.412 37.184 1 32.24 ? C4 AMP 101 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           23 
#