data_8SXL # _model_server_result.job_id gVeTTMvKqU5MUvP4A8_PRw _model_server_result.datetime_utc '2024-11-23 01:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 8SXL # _exptl.entry_id 8SXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SXL _cell.length_a 43.838 _cell.length_b 43.838 _cell.length_c 82.845 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' TLN 1 A TLN 1 1_555 A P TLN 2 A TLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale2 A O3' TLN 2 A TLN 2 1_555 A P LCA 3 A LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? covale ? covale3 A O3' LCA 3 A LCA 3 1_555 A P LCG 4 A LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? covale ? covale4 A O3' LCG 4 A LCG 4 1_555 A P A 5 A A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale5 B O3' TLN 1 B TLN 1 1_555 B P TLN 2 B TLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale6 B O3' TLN 2 B TLN 2 1_555 B P LCA 3 B LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.588 ? covale ? covale7 B O3' LCA 3 B LCA 3 1_555 B P LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? covale ? covale8 B O3' LCG 4 B LCG 4 1_555 B P A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? hydrog WATSON-CRICK hydrog1 A N1 LCA 3 A LCA 3 1_555 B N3 U 14 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 LCA 3 A LCA 3 1_555 B O4 U 14 B U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 LCG 4 A LCG 4 1_555 B N3 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 LCG 4 A LCG 4 1_555 B O2 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 LCG 4 A LCG 4 1_555 B N4 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 A 5 A A 5 1_555 B N3 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 A 5 A A 5 1_555 B O4 U 12 B U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 C 6 A C 6 1_555 B N1 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 C 6 A C 6 1_555 B O6 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 C 6 A C 6 1_555 B N2 G 11 B G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 U 7 A U 7 1_555 B N1 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 U 7 A U 7 1_555 B N6 A 10 B A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 U 8 A U 8 1_555 B N1 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 U 8 A U 8 1_555 B N6 A 9 B A 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 9 A A 9 1_555 B N3 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 9 A A 9 1_555 B O4 U 8 B U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 A 10 A A 10 1_555 B N3 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 A 10 A A 10 1_555 B O4 U 7 B U 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 G 11 A G 11 1_555 B N3 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 G 11 A G 11 1_555 B O2 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 G 11 A G 11 1_555 B N4 C 6 B C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 U 12 A U 12 1_555 B N1 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 U 12 A U 12 1_555 B N6 A 5 B A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 C 13 A C 13 1_555 B N1 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 C 13 A C 13 1_555 B O6 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 C 13 A C 13 1_555 B N2 LCG 4 B LCG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 U 14 A U 14 1_555 B N1 LCA 3 B LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O4 U 14 A U 14 1_555 B N6 LCA 3 B LCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 40 n n P O2P AMP sing 41 n n P O3P AMP sing 42 n n P O5' AMP sing 43 n n O2P HOP2 AMP sing 44 n n O3P HOP3 AMP sing 45 n n O5' C5' AMP sing 46 n n C5' C4' AMP sing 47 n n C5' "H5'1" AMP sing 48 n n C5' "H5'2" AMP sing 49 n n C4' O4' AMP sing 50 n n C4' C3' AMP sing 51 n n C4' H4' AMP sing 52 n n O4' C1' AMP sing 53 n n C3' O3' AMP sing 54 n n C3' C2' AMP sing 55 n n C3' H3' AMP sing 56 n n O3' HO3' AMP sing 57 n n C2' O2' AMP sing 58 n n C2' C1' AMP sing 59 n n C2' H2' AMP sing 60 n n O2' HO2' AMP sing 61 n n C1' N9 AMP sing 62 n n C1' H1' AMP sing 63 n n N9 C8 AMP sing 64 n y N9 C4 AMP sing 65 n y C8 N7 AMP doub 66 n y C8 H8 AMP sing 67 n n N7 C5 AMP sing 68 n y C5 C6 AMP sing 69 n y C5 C4 AMP doub 70 n y C6 N6 AMP sing 71 n n C6 N1 AMP doub 72 n y N6 HN61 AMP sing 73 n n N6 HN62 AMP sing 74 n n N1 C2 AMP sing 75 n y C2 N3 AMP doub 76 n y C2 H2 AMP sing 77 n n N3 C4 AMP sing 78 n y # _atom_sites.entry_id 8SXL _atom_sites.fract_transf_matrix[1][1] 0.022811 _atom_sites.fract_transf_matrix[1][2] 0.01317 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 101 1 AMP A . D 2 AMP B 1 101 2 AMP A . E 2 AMP B 1 102 3 AMP A . F 3 HOH A 1 201 7 HOH HOH . F 3 HOH A 2 202 12 HOH HOH . F 3 HOH A 3 203 13 HOH HOH . F 3 HOH A 4 204 10 HOH HOH . F 3 HOH A 5 205 14 HOH HOH . F 3 HOH A 6 206 4 HOH HOH . F 3 HOH A 7 207 2 HOH HOH . F 3 HOH A 8 208 8 HOH HOH . F 3 HOH A 9 209 5 HOH HOH . F 3 HOH A 10 210 3 HOH HOH . F 3 HOH A 11 211 9 HOH HOH . G 3 HOH B 1 201 18 HOH HOH . G 3 HOH B 2 202 11 HOH HOH . G 3 HOH B 3 203 20 HOH HOH . G 3 HOH B 4 204 21 HOH HOH . G 3 HOH B 5 205 19 HOH HOH . G 3 HOH B 6 206 16 HOH HOH . G 3 HOH B 7 207 17 HOH HOH . G 3 HOH B 8 208 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 2 15.964 -12.024 41.611 1 66.57 ? P AMP 102 B 1 HETATM 2 O O1P AMP . . . E 2 15.835 -12.938 40.309 1 67.01 ? O1P AMP 102 B 1 HETATM 3 O O2P AMP . . . E 2 14.718 -11.393 42.117 1 55.84 ? O2P AMP 102 B 1 HETATM 4 O O3P AMP . . . E 2 16.803 -12.607 42.595 1 63.02 ? O3P AMP 102 B 1 HETATM 5 O O5' AMP . . . E 2 16.846 -10.784 41 1 63.41 ? O5' AMP 102 B 1 HETATM 6 C C5' AMP . . . E 2 18.155 -11.074 40.478 1 63.07 ? C5' AMP 102 B 1 HETATM 7 C C4' AMP . . . E 2 18.959 -9.803 40.441 1 54.97 ? C4' AMP 102 B 1 HETATM 8 O O4' AMP . . . E 2 18.066 -8.841 39.914 1 55.81 ? O4' AMP 102 B 1 HETATM 9 C C3' AMP . . . E 2 19.346 -9.372 41.85 1 55.34 ? C3' AMP 102 B 1 HETATM 10 O O3' AMP . . . E 2 20.784 -9.34 41.873 1 57.56 ? O3' AMP 102 B 1 HETATM 11 C C2' AMP . . . E 2 18.79 -7.919 41.996 1 53.76 ? C2' AMP 102 B 1 HETATM 12 O O2' AMP . . . E 2 19.845 -7.011 42.396 1 60.31 ? O2' AMP 102 B 1 HETATM 13 C C1' AMP . . . E 2 18.305 -7.561 40.57 1 45.53 ? C1' AMP 102 B 1 HETATM 14 N N9 AMP . . . E 2 16.991 -7 40.51 1 31.66 ? N9 AMP 102 B 1 HETATM 15 C C8 AMP . . . E 2 15.738 -7.499 40.763 1 28.39 ? C8 AMP 102 B 1 HETATM 16 N N7 AMP . . . E 2 14.781 -6.614 40.644 1 32.64 ? N7 AMP 102 B 1 HETATM 17 C C5 AMP . . . E 2 15.445 -5.452 40.281 1 31.54 ? C5 AMP 102 B 1 HETATM 18 C C6 AMP . . . E 2 14.989 -4.156 39.974 1 35.39 ? C6 AMP 102 B 1 HETATM 19 N N6 AMP . . . E 2 13.714 -3.79 40.041 1 35.29 ? N6 AMP 102 B 1 HETATM 20 N N1 AMP . . . E 2 15.915 -3.218 39.674 1 32.4 ? N1 AMP 102 B 1 HETATM 21 C C2 AMP . . . E 2 17.198 -3.585 39.622 1 33.05 ? C2 AMP 102 B 1 HETATM 22 N N3 AMP . . . E 2 17.748 -4.774 39.877 1 31.59 ? N3 AMP 102 B 1 HETATM 23 C C4 AMP . . . E 2 16.809 -5.664 40.233 1 32.24 ? C4 AMP 102 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #