data_8SXN
#
_model_server_result.job_id            8LzRW9PCGkYDH8RZCXhcFQ 
_model_server_result.datetime_utc      '2024-10-19 03:53:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1102}' 
#
_entry.id    8SXN 
#
_exptl.entry_id    8SXN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SXN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 123 n n 
PG O2G ATP sing 124 n n 
PG O3G ATP sing 125 n n 
PG O3B ATP sing 126 n n 
O2G HOG2 ATP sing 127 n n 
O3G HOG3 ATP sing 128 n n 
PB O1B ATP doub 129 n n 
PB O2B ATP sing 130 n n 
PB O3B ATP sing 131 n n 
PB O3A ATP sing 132 n n 
O2B HOB2 ATP sing 133 n n 
PA O1A ATP doub 134 n n 
PA O2A ATP sing 135 n n 
PA O3A ATP sing 136 n n 
PA O5' ATP sing 137 n n 
O2A HOA2 ATP sing 138 n n 
O5' C5' ATP sing 139 n n 
C5' C4' ATP sing 140 n n 
C5' "H5'1" ATP sing 141 n n 
C5' "H5'2" ATP sing 142 n n 
C4' O4' ATP sing 143 n n 
C4' C3' ATP sing 144 n n 
C4' H4' ATP sing 145 n n 
O4' C1' ATP sing 146 n n 
C3' O3' ATP sing 147 n n 
C3' C2' ATP sing 148 n n 
C3' H3' ATP sing 149 n n 
O3' HO3' ATP sing 150 n n 
C2' O2' ATP sing 151 n n 
C2' C1' ATP sing 152 n n 
C2' H2' ATP sing 153 n n 
O2' HO2' ATP sing 154 n n 
C1' N9 ATP sing 155 n n 
C1' H1' ATP sing 156 n n 
N9 C8 ATP sing 157 n y 
N9 C4 ATP sing 158 n y 
C8 N7 ATP doub 159 n y 
C8 H8 ATP sing 160 n n 
N7 C5 ATP sing 161 n y 
C5 C6 ATP sing 162 n y 
C5 C4 ATP doub 163 n y 
C6 N6 ATP sing 164 n n 
C6 N1 ATP doub 165 n y 
N6 HN61 ATP sing 166 n n 
N6 HN62 ATP sing 167 n n 
N1 C2 ATP sing 168 n y 
C2 N3 ATP doub 169 n y 
C2 H2 ATP sing 170 n n 
N3 C4 ATP sing 171 n y 
#
_atom_sites.entry_id                     8SXN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 7YN C 1 1101 1101 7YN LIG . 
F 4 ATP C 1 1102 1201 ATP ATP . 
G 3 7YN D 1 1101 1101 7YN LIG . 
H 4 ATP D 1 1102 1201 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 4 157.241 102.655 150.539 1 89.29 ? PG ATP 1102 C 1 
HETATM 2 O O1G ATP . . . F 4 158.195 102.945 151.62 1 84.98 ? O1G ATP 1102 C 1 
HETATM 3 O O2G ATP . . . F 4 157.1 103.969 149.632 1 80.15 -1 O2G ATP 1102 C 1 
HETATM 4 O O3G ATP . . . F 4 157.842 101.474 149.646 1 78.72 ? O3G ATP 1102 C 1 
HETATM 5 P PB ATP . . . F 4 155.122 103.477 151.876 1 101.64 ? PB ATP 1102 C 1 
HETATM 6 O O1B ATP . . . F 4 156.027 103.996 152.93 1 79.91 -1 O1B ATP 1102 C 1 
HETATM 7 O O2B ATP . . . F 4 154.875 104.662 150.818 1 81.19 ? O2B ATP 1102 C 1 
HETATM 8 O O3B ATP . . . F 4 155.806 102.214 151.141 1 83.26 ? O3B ATP 1102 C 1 
HETATM 9 P PA ATP . . . F 4 152.634 102.585 151.487 1 88.6 ? PA ATP 1102 C 1 
HETATM 10 O O1A ATP . . . F 4 152.955 101.235 150.99 1 90.92 -1 O1A ATP 1102 C 1 
HETATM 11 O O2A ATP . . . F 4 152.59 103.605 150.253 1 89.22 ? O2A ATP 1102 C 1 
HETATM 12 O O3A ATP . . . F 4 153.723 103.063 152.579 1 82.43 ? O3A ATP 1102 C 1 
HETATM 13 O O5' ATP . . . F 4 151.147 102.592 152.117 1 89.47 ? O5' ATP 1102 C 1 
HETATM 14 C C5' ATP . . . F 4 150.946 101.575 153.124 1 87.02 ? C5' ATP 1102 C 1 
HETATM 15 C C4' ATP . . . F 4 149.475 101.629 153.567 1 92.6 ? C4' ATP 1102 C 1 
HETATM 16 O O4' ATP . . . F 4 149.159 102.985 153.966 1 90.13 ? O4' ATP 1102 C 1 
HETATM 17 C C3' ATP . . . F 4 148.518 101.265 152.403 1 98.66 ? C3' ATP 1102 C 1 
HETATM 18 O O3' ATP . . . F 4 148.09 99.9 152.502 1 102.54 ? O3' ATP 1102 C 1 
HETATM 19 C C2' ATP . . . F 4 147.313 102.192 152.62 1 100.89 ? C2' ATP 1102 C 1 
HETATM 20 O O2' ATP . . . F 4 146.324 101.52 153.4 1 94.38 ? O2' ATP 1102 C 1 
HETATM 21 C C1' ATP . . . F 4 147.899 103.406 153.378 1 92.84 ? C1' ATP 1102 C 1 
HETATM 22 N N9 ATP . . . F 4 148.098 104.544 152.46 1 93.29 ? N9 ATP 1102 C 1 
HETATM 23 C C8 ATP . . . F 4 149.251 105.266 152.32 1 96.07 ? C8 ATP 1102 C 1 
HETATM 24 N N7 ATP . . . F 4 149.011 106.408 151.74 1 102.63 ? N7 ATP 1102 C 1 
HETATM 25 C C5 ATP . . . F 4 147.698 106.49 151.44 1 103.6 ? C5 ATP 1102 C 1 
HETATM 26 C C6 ATP . . . F 4 146.865 107.454 150.802 1 115.65 ? C6 ATP 1102 C 1 
HETATM 27 N N6 ATP . . . F 4 147.396 108.638 150.348 1 120.61 ? N6 ATP 1102 C 1 
HETATM 28 N N1 ATP . . . F 4 145.548 107.188 150.655 1 132.08 ? N1 ATP 1102 C 1 
HETATM 29 C C2 ATP . . . F 4 145.016 106.028 151.089 1 133.09 ? C2 ATP 1102 C 1 
HETATM 30 N N3 ATP . . . F 4 145.765 105.095 151.692 1 115.85 ? N3 ATP 1102 C 1 
HETATM 31 C C4 ATP . . . F 4 147.094 105.282 151.888 1 100.24 ? C4 ATP 1102 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#