data_8SXX
#
_model_server_result.job_id            8ipSU9l1CBlCnVeDutN_zw 
_model_server_result.datetime_utc      '2024-11-14 19:15:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sxx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":501}' 
#
_entry.id    8SXX 
#
_exptl.entry_id    8SXX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SXX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SXX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     8SXX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 NAD A 1 501 501 NAD LIG . 
N 2 NAD B 1 501 501 NAD LIG . 
O 2 NAD C 1 501 501 NAD LIG . 
P 2 NAD D 1 501 501 NAD LIG . 
Q 2 NAD E 1 501 501 NAD LIG . 
R 2 NAD F 1 501 501 NAD LIG . 
S 2 NAD G 1 501 501 NAD LIG . 
T 2 NAD H 1 501 501 NAD LIG . 
U 2 NAD I 1 501 501 NAD LIG . 
V 2 NAD J 1 501 501 NAD LIG . 
W 2 NAD K 1 501 501 NAD LIG . 
X 2 NAD L 1 501 501 NAD LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . X 2 172.446 117.462 125.774 1 21.97 ? PA NAD 501 L 1 
HETATM 2 O O1A NAD . . . X 2 172.655 116.474 126.895 1 21.97 -1 O1A NAD 501 L 1 
HETATM 3 O O2A NAD . . . X 2 172.638 116.763 124.449 1 21.97 ? O2A NAD 501 L 1 
HETATM 4 O O5B NAD . . . X 2 173.558 118.704 125.907 1 21.97 ? O5B NAD 501 L 1 
HETATM 5 C C5B NAD . . . X 2 174.089 119.025 127.179 1 21.97 ? C5B NAD 501 L 1 
HETATM 6 C C4B NAD . . . X 2 175.547 119.56 126.982 1 21.97 ? C4B NAD 501 L 1 
HETATM 7 O O4B NAD . . . X 2 176.244 119.469 128.082 1 21.97 ? O4B NAD 501 L 1 
HETATM 8 C C3B NAD . . . X 2 176.327 118.674 125.93 1 21.97 ? C3B NAD 501 L 1 
HETATM 9 O O3B NAD . . . X 2 175.664 117.461 125.74 1 21.97 ? O3B NAD 501 L 1 
HETATM 10 C C2B NAD . . . X 2 177.696 118.431 126.55 1 21.97 ? C2B NAD 501 L 1 
HETATM 11 O O2B NAD . . . X 2 178.707 118.692 125.612 1 21.97 ? O2B NAD 501 L 1 
HETATM 12 C C1B NAD . . . X 2 177.767 119.31 127.567 1 21.97 ? C1B NAD 501 L 1 
HETATM 13 N N9A NAD . . . X 2 178.62 118.906 128.702 1 21.97 ? N9A NAD 501 L 1 
HETATM 14 C C8A NAD . . . X 2 179.747 118.205 128.625 1 21.97 ? C8A NAD 501 L 1 
HETATM 15 N N7A NAD . . . X 2 180.245 118.032 129.839 1 21.97 ? N7A NAD 501 L 1 
HETATM 16 C C5A NAD . . . X 2 179.427 118.635 130.728 1 21.97 ? C5A NAD 501 L 1 
HETATM 17 C C6A NAD . . . X 2 179.398 118.807 132.12 1 21.97 ? C6A NAD 501 L 1 
HETATM 18 N N6A NAD . . . X 2 180.443 118.252 132.935 1 21.97 ? N6A NAD 501 L 1 
HETATM 19 N N1A NAD . . . X 2 178.41 119.479 132.686 1 21.97 ? N1A NAD 501 L 1 
HETATM 20 C C2A NAD . . . X 2 177.446 119.992 131.94 1 21.97 ? C2A NAD 501 L 1 
HETATM 21 N N3A NAD . . . X 2 177.425 119.859 130.627 1 21.97 ? N3A NAD 501 L 1 
HETATM 22 C C4A NAD . . . X 2 178.395 119.192 129.998 1 21.97 ? C4A NAD 501 L 1 
HETATM 23 O O3 NAD . . . X 2 170.902 118.073 125.85 1 21.97 ? O3 NAD 501 L 1 
HETATM 24 P PN NAD . . . X 2 169.536 117.163 125.619 1 21.97 ? PN NAD 501 L 1 
HETATM 25 O O1N NAD . . . X 2 169.689 116.332 124.361 1 21.97 -1 O1N NAD 501 L 1 
HETATM 26 O O2N NAD . . . X 2 169.329 116.246 126.808 1 21.97 ? O2N NAD 501 L 1 
HETATM 27 O O5D NAD . . . X 2 168.208 118.168 125.457 1 21.97 ? O5D NAD 501 L 1 
HETATM 28 C C5D NAD . . . X 2 167.075 117.932 126.27 1 21.97 ? C5D NAD 501 L 1 
HETATM 29 C C4D NAD . . . X 2 165.819 117.929 125.371 1 21.97 ? C4D NAD 501 L 1 
HETATM 30 O O4D NAD . . . X 2 164.549 117.775 126.22 1 21.97 ? O4D NAD 501 L 1 
HETATM 31 C C3D NAD . . . X 2 165.843 116.699 124.4 1 21.97 ? C3D NAD 501 L 1 
HETATM 32 O O3D NAD . . . X 2 166.237 117.102 123.111 1 21.97 ? O3D NAD 501 L 1 
HETATM 33 C C2D NAD . . . X 2 164.636 116.248 124.373 1 21.97 ? C2D NAD 501 L 1 
HETATM 34 O O2D NAD . . . X 2 164.646 114.836 124.31 1 21.97 ? O2D NAD 501 L 1 
HETATM 35 C C1D NAD . . . X 2 163.894 116.738 125.75 1 21.97 ? C1D NAD 501 L 1 
HETATM 36 N N1N NAD . . . X 2 162.624 117.482 125.927 1 21.97 ? N1N NAD 501 L 1 
HETATM 37 C C2N NAD . . . X 2 161.717 117.063 126.806 1 21.97 ? C2N NAD 501 L 1 
HETATM 38 C C3N NAD . . . X 2 160.516 117.752 126.984 1 21.97 ? C3N NAD 501 L 1 
HETATM 39 C C7N NAD . . . X 2 159.427 117.268 128.021 1 21.97 ? C7N NAD 501 L 1 
HETATM 40 O O7N NAD . . . X 2 159.351 117.782 129.089 1 21.97 ? O7N NAD 501 L 1 
HETATM 41 N N7N NAD . . . X 2 158.482 116.173 127.661 1 21.97 ? N7N NAD 501 L 1 
HETATM 42 C C4N NAD . . . X 2 160.293 118.889 126.23 1 21.97 ? C4N NAD 501 L 1 
HETATM 43 C C5N NAD . . . X 2 161.262 119.305 125.318 1 21.97 ? C5N NAD 501 L 1 
HETATM 44 C C6N NAD . . . X 2 162.429 118.561 125.2 1 21.97 ? C6N NAD 501 L 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#