data_8SYC # _model_server_result.job_id KXEQsJMOmllbjVVWf6fYng _model_server_result.datetime_utc '2025-04-02 19:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8syc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1103}' # _entry.id 8SYC # _exptl.entry_id 8SYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.315 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-[(4,7-dimethoxyquinolin-2-yl)carbonylamino]-5-[methyl-(phenylmethyl)carbamoyl]phenyl]-oxidanyl-oxidanylidene-boron' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SYC _cell.length_a 78.586 _cell.length_b 78.586 _cell.length_c 166.339 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 170 A ASP 822 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A OD1 ASP 170 A ASP 822 1_555 D MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A OD1 ASP 285 A ASP 937 1_555 C MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 C MG MG . A MG 1101 1_555 I O HOH . A HOH 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 D MG MG . A MG 1102 1_555 E O36 X5W . A X5W 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc6 D MG MG . A MG 1102 1_555 I O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc7 D MG MG . A MG 1102 1_555 I O HOH . A HOH 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc8 D MG MG . A MG 1102 1_555 I O HOH . A HOH 1219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc9 D MG MG . A MG 1102 1_555 I O HOH . A HOH 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc10 B OD2 ASP 170 D ASP 822 1_555 F MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc11 B OD1 ASP 170 D ASP 822 1_555 G MG MG . D MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc12 B OD1 ASP 285 D ASP 937 1_555 F MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc13 F MG MG . D MG 1101 1_555 H O37 X5W . D X5W 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc14 G MG MG . D MG 1102 1_555 H O37 X5W . D X5W 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc15 G MG MG . D MG 1102 1_555 H O36 X5W . D X5W 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc16 G MG MG . D MG 1102 1_555 J O HOH . D HOH 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc17 G MG MG . D MG 1102 1_555 J O HOH . D HOH 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc18 G MG MG . D MG 1102 1_555 J O HOH . D HOH 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc19 G MG MG . D MG 1102 1_555 J O HOH . D HOH 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C27 H25 B N3 O6' _chem_comp.formula_weight 498.315 _chem_comp.id X5W _chem_comp.mon_nstd_flag . _chem_comp.name '[3-[(4,7-dimethoxyquinolin-2-yl)carbonylamino]-5-[methyl-(phenylmethyl)carbamoyl]phenyl]-oxidanyl-oxidanylidene-boron' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 B35 X5W doub 376 n n O37 B35 X5W sing 377 n n B35 C20 X5W sing 378 n n C01 O02 X5W sing 379 n n C20 C19 X5W doub 380 n y C20 C21 X5W sing 381 n y C19 C18 X5W sing 382 n y O02 C03 X5W sing 383 n n C21 C22 X5W doub 384 n y C03 C14 X5W doub 385 n y C03 C04 X5W sing 386 n y C14 C13 X5W sing 387 n y C18 N17 X5W sing 388 n n C18 C23 X5W doub 389 n y N17 C15 X5W sing 390 n n N12 C13 X5W sing 391 n y N12 C11 X5W doub 392 n y C04 C05 X5W doub 393 n y C13 C06 X5W doub 394 n y C22 C23 X5W sing 395 n y C22 C24 X5W sing 396 n n C15 C11 X5W sing 397 n n C15 O16 X5W doub 398 n n C11 C10 X5W sing 399 n y C05 C06 X5W sing 400 n y C06 C07 X5W sing 401 n y C24 O25 X5W doub 402 n n C24 N26 X5W sing 403 n n C10 C07 X5W doub 404 n y C07 O08 X5W sing 405 n n C27 N26 X5W sing 406 n n N26 C28 X5W sing 407 n n O08 C09 X5W sing 408 n n C28 C29 X5W sing 409 n n C29 C30 X5W doub 410 n y C29 C34 X5W sing 411 n y C30 C31 X5W sing 412 n y C34 C33 X5W doub 413 n y C31 C32 X5W doub 414 n y C33 C32 X5W sing 415 n y C10 H1 X5W sing 416 n n C21 H2 X5W sing 417 n n C28 H3 X5W sing 418 n n C28 H4 X5W sing 419 n n C01 H5 X5W sing 420 n n C01 H6 X5W sing 421 n n C01 H7 X5W sing 422 n n C04 H8 X5W sing 423 n n C05 H9 X5W sing 424 n n C09 H10 X5W sing 425 n n C09 H11 X5W sing 426 n n C09 H12 X5W sing 427 n n C14 H13 X5W sing 428 n n N17 H14 X5W sing 429 n n C19 H15 X5W sing 430 n n C23 H16 X5W sing 431 n n C27 H17 X5W sing 432 n n C27 H18 X5W sing 433 n n C27 H19 X5W sing 434 n n C30 H20 X5W sing 435 n n C31 H21 X5W sing 436 n n C32 H22 X5W sing 437 n n C33 H23 X5W sing 438 n n C34 H24 X5W sing 439 n n O37 H25 X5W sing 440 n n # _atom_sites.entry_id 8SYC _atom_sites.fract_transf_matrix[1][1] 0.012725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1101 471 MG MG . D 2 MG A 1 1102 472 MG MG . E 3 X5W A 1 1103 1 X5W LIG . F 2 MG D 1 1101 471 MG MG . G 2 MG D 1 1102 472 MG MG . H 3 X5W D 1 1103 2 X5W LIG . I 4 HOH A 1 1201 37 HOH HOH . I 4 HOH A 2 1202 17 HOH HOH . I 4 HOH A 3 1203 7 HOH HOH . I 4 HOH A 4 1204 16 HOH HOH . I 4 HOH A 5 1205 14 HOH HOH . I 4 HOH A 6 1206 6 HOH HOH . I 4 HOH A 7 1207 70 HOH HOH . I 4 HOH A 8 1208 42 HOH HOH . I 4 HOH A 9 1209 10 HOH HOH . I 4 HOH A 10 1210 35 HOH HOH . I 4 HOH A 11 1211 33 HOH HOH . I 4 HOH A 12 1212 57 HOH HOH . I 4 HOH A 13 1213 27 HOH HOH . I 4 HOH A 14 1214 44 HOH HOH . I 4 HOH A 15 1215 15 HOH HOH . I 4 HOH A 16 1216 43 HOH HOH . I 4 HOH A 17 1217 32 HOH HOH . I 4 HOH A 18 1218 58 HOH HOH . I 4 HOH A 19 1219 11 HOH HOH . I 4 HOH A 20 1220 26 HOH HOH . I 4 HOH A 21 1221 46 HOH HOH . I 4 HOH A 22 1222 9 HOH HOH . I 4 HOH A 23 1223 56 HOH HOH . I 4 HOH A 24 1224 34 HOH HOH . I 4 HOH A 25 1225 71 HOH HOH . I 4 HOH A 26 1226 39 HOH HOH . I 4 HOH A 27 1227 72 HOH HOH . I 4 HOH A 28 1228 45 HOH HOH . I 4 HOH A 29 1229 73 HOH HOH . I 4 HOH A 30 1230 18 HOH HOH . I 4 HOH A 31 1231 80 HOH HOH . I 4 HOH A 32 1232 55 HOH HOH . I 4 HOH A 33 1233 74 HOH HOH . I 4 HOH A 34 1234 75 HOH HOH . I 4 HOH A 35 1235 31 HOH HOH . I 4 HOH A 36 1236 41 HOH HOH . I 4 HOH A 37 1237 47 HOH HOH . I 4 HOH A 38 1238 53 HOH HOH . I 4 HOH A 39 1239 24 HOH HOH . J 4 HOH D 1 1201 23 HOH HOH . J 4 HOH D 2 1202 81 HOH HOH . J 4 HOH D 3 1203 30 HOH HOH . J 4 HOH D 4 1204 29 HOH HOH . J 4 HOH D 5 1205 5 HOH HOH . J 4 HOH D 6 1206 12 HOH HOH . J 4 HOH D 7 1207 19 HOH HOH . J 4 HOH D 8 1208 3 HOH HOH . J 4 HOH D 9 1209 25 HOH HOH . J 4 HOH D 10 1210 52 HOH HOH . J 4 HOH D 11 1211 84 HOH HOH . J 4 HOH D 12 1212 2 HOH HOH . J 4 HOH D 13 1213 51 HOH HOH . J 4 HOH D 14 1214 28 HOH HOH . J 4 HOH D 15 1215 20 HOH HOH . J 4 HOH D 16 1216 48 HOH HOH . J 4 HOH D 17 1217 21 HOH HOH . J 4 HOH D 18 1218 87 HOH HOH . J 4 HOH D 19 1219 60 HOH HOH . J 4 HOH D 20 1220 78 HOH HOH . J 4 HOH D 21 1221 61 HOH HOH . J 4 HOH D 22 1222 1 HOH HOH . J 4 HOH D 23 1223 79 HOH HOH . J 4 HOH D 24 1224 88 HOH HOH . J 4 HOH D 25 1225 65 HOH HOH . J 4 HOH D 26 1226 59 HOH HOH . J 4 HOH D 27 1227 67 HOH HOH . J 4 HOH D 28 1228 66 HOH HOH . J 4 HOH D 29 1229 76 HOH HOH . J 4 HOH D 30 1230 85 HOH HOH . J 4 HOH D 31 1231 64 HOH HOH . J 4 HOH D 32 1232 82 HOH HOH . J 4 HOH D 33 1233 77 HOH HOH . J 4 HOH D 34 1234 83 HOH HOH . J 4 HOH D 35 1235 63 HOH HOH . J 4 HOH D 36 1236 68 HOH HOH . J 4 HOH D 37 1237 50 HOH HOH . J 4 HOH D 38 1238 22 HOH HOH . J 4 HOH D 39 1239 62 HOH HOH . J 4 HOH D 40 1240 13 HOH HOH . J 4 HOH D 41 1241 49 HOH HOH . J 4 HOH D 42 1242 86 HOH HOH . J 4 HOH D 43 1243 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 X5W . . . E 3 -15.189 30.982 4.219 1 83.09 ? C10 X5W 1103 A 1 HETATM 2 N N12 X5W . . . E 3 -15.908 29.519 2.515 1 88.64 ? N12 X5W 1103 A 1 HETATM 3 C C13 X5W . . . E 3 -14.714 28.809 2.556 1 89.71 ? C13 X5W 1103 A 1 HETATM 4 C C15 X5W . . . E 3 -17.517 31.286 3.207 1 80.52 ? C15 X5W 1103 A 1 HETATM 5 C C20 X5W . . . E 3 -21.586 32.252 0.502 1 105.78 ? C20 X5W 1103 A 1 HETATM 6 C C21 X5W . . . E 3 -22.185 32.933 1.566 1 119.33 ? C21 X5W 1103 A 1 HETATM 7 C C22 X5W . . . E 3 -21.567 32.976 2.809 1 115.2 ? C22 X5W 1103 A 1 HETATM 8 C C24 X5W . . . E 3 -22.209 33.66 4.024 1 121.8 ? C24 X5W 1103 A 1 HETATM 9 C C28 X5W . . . E 3 -22.169 35.088 6.098 1 147.48 ? C28 X5W 1103 A 1 HETATM 10 C C01 X5W . . . E 3 -14.294 25.576 -0.207 1 84.25 ? C01 X5W 1103 A 1 HETATM 11 O O02 X5W . . . E 3 -13.283 25.847 0.742 1 90.88 ? O02 X5W 1103 A 1 HETATM 12 C C03 X5W . . . E 3 -13.386 26.941 1.648 1 86.41 ? C03 X5W 1103 A 1 HETATM 13 C C04 X5W . . . E 3 -12.327 27.294 2.532 1 80.28 ? C04 X5W 1103 A 1 HETATM 14 C C05 X5W . . . E 3 -12.472 28.375 3.411 1 80.98 ? C05 X5W 1103 A 1 HETATM 15 C C06 X5W . . . E 3 -13.701 29.151 3.422 1 88.68 ? C06 X5W 1103 A 1 HETATM 16 C C07 X5W . . . E 3 -13.944 30.29 4.296 1 86.85 ? C07 X5W 1103 A 1 HETATM 17 O O08 X5W . . . E 3 -12.939 30.685 5.201 1 81.85 ? O08 X5W 1103 A 1 HETATM 18 C C09 X5W . . . E 3 -13.228 31.766 6.042 1 81.9 ? C09 X5W 1103 A 1 HETATM 19 C C11 X5W . . . E 3 -16.167 30.557 3.304 1 83.76 ? C11 X5W 1103 A 1 HETATM 20 C C14 X5W . . . E 3 -14.557 27.698 1.671 1 87.77 ? C14 X5W 1103 A 1 HETATM 21 O O16 X5W . . . E 3 -17.752 32.098 4.043 1 73.01 ? O16 X5W 1103 A 1 HETATM 22 N N17 X5W . . . E 3 -18.463 30.941 2.131 1 81.61 ? N17 X5W 1103 A 1 HETATM 23 C C18 X5W . . . E 3 -19.754 31.612 1.959 1 92.29 ? C18 X5W 1103 A 1 HETATM 24 C C19 X5W . . . E 3 -20.367 31.593 0.708 1 96.35 ? C19 X5W 1103 A 1 HETATM 25 C C23 X5W . . . E 3 -20.368 32.301 3.003 1 101.4 ? C23 X5W 1103 A 1 HETATM 26 O O25 X5W . . . E 3 -23.332 33.375 4.282 1 116.54 ? O25 X5W 1103 A 1 HETATM 27 N N26 X5W . . . E 3 -21.491 34.561 4.919 1 138.69 ? N26 X5W 1103 A 1 HETATM 28 C C27 X5W . . . E 3 -20.108 34.922 4.666 1 142.14 ? C27 X5W 1103 A 1 HETATM 29 C C29 X5W . . . E 3 -22.125 33.979 7.184 1 159.25 ? C29 X5W 1103 A 1 HETATM 30 C C30 X5W . . . E 3 -23.311 33.406 7.668 1 154.82 ? C30 X5W 1103 A 1 HETATM 31 C C31 X5W . . . E 3 -23.275 32.402 8.64 1 141.63 ? C31 X5W 1103 A 1 HETATM 32 C C32 X5W . . . E 3 -22.052 31.96 9.131 1 139.19 ? C32 X5W 1103 A 1 HETATM 33 C C33 X5W . . . E 3 -20.861 32.509 8.657 1 138.36 ? C33 X5W 1103 A 1 HETATM 34 C C34 X5W . . . E 3 -20.899 33.512 7.687 1 150.65 ? C34 X5W 1103 A 1 HETATM 35 B B35 X5W . . . E 3 -22.33 32.254 -0.899 1 97.28 ? B35 X5W 1103 A 1 HETATM 36 O O36 X5W . . . E 3 -21.827 31.601 -1.949 1 95.27 ? O36 X5W 1103 A 1 HETATM 37 O O37 X5W . . . E 3 -23.499 32.893 -1.081 1 80.6 ? O37 X5W 1103 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #