data_8SZ3
#
_model_server_result.job_id            P65uGM0hPk8R3yFGxW6s7Q 
_model_server_result.datetime_utc      '2025-01-09 21:55:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sz3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    8SZ3 
#
_exptl.entry_id    8SZ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.58 
_cell.angle_gamma         90 
_cell.entry_id            8SZ3 
_cell.length_a            82.375 
_cell.length_b            76.405 
_cell.length_c            128.019 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SZ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,K 1 1 
B,E,F,I,J,L 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -27.882867 0 124.945629 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 400 NAG 
2 n C NAG 2 C 2 NAG A 401 NAG 
2 n D NAG 1 D 1 NAG A 402 NAG 
2 n D NAG 2 D 2 NAG A 403 NAG 
2 n E NAG 1 E 1 NAG B 401 NAG 
2 n E NAG 2 E 2 NAG B 402 NAG 
2 n F NAG 1 F 1 NAG B 404 NAG 
2 n F NAG 2 F 2 NAG B 405 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 125 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 138 A CYS 138 1_555 A SG CYS 235 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 367 A CYS 367 1_555 A SG CYS 397 A CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 96 B CYS 96 1_555 B SG CYS 125 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 B SG CYS 138 B CYS 138 1_555 B SG CYS 235 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 B SG CYS 367 B CYS 367 1_555 B SG CYS 397 B CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 127 A ASN 127 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 A ND2 ASN 219 A ASN 219 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 B ND2 ASN 127 B ASN 127 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 B ND2 ASN 219 B ASN 219 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8SZ3 
_atom_sites.fract_transf_matrix[1][1]    0.01214 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002709 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013088 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008003 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 X18 A 1 401 500 X18 LIG . 
H 4 EDO A 1 402 1 EDO EDO . 
I 3 X18 B 1 401 500 X18 LIG . 
J 4 EDO B 1 402 2 EDO EDO . 
K 5 HOH A 1 501 51 HOH HOH . 
K 5 HOH A 2 502 59 HOH HOH . 
K 5 HOH A 3 503 44 HOH HOH . 
K 5 HOH A 4 504 15 HOH HOH . 
K 5 HOH A 5 505 43 HOH HOH . 
K 5 HOH A 6 506 38 HOH HOH . 
K 5 HOH A 7 507 4 HOH HOH . 
K 5 HOH A 8 508 30 HOH HOH . 
K 5 HOH A 9 509 8 HOH HOH . 
K 5 HOH A 10 510 25 HOH HOH . 
K 5 HOH A 11 511 31 HOH HOH . 
K 5 HOH A 12 512 1 HOH HOH . 
K 5 HOH A 13 513 5 HOH HOH . 
K 5 HOH A 14 514 21 HOH HOH . 
K 5 HOH A 15 515 27 HOH HOH . 
K 5 HOH A 16 516 39 HOH HOH . 
K 5 HOH A 17 517 14 HOH HOH . 
K 5 HOH A 18 518 45 HOH HOH . 
K 5 HOH A 19 519 29 HOH HOH . 
K 5 HOH A 20 520 13 HOH HOH . 
K 5 HOH A 21 521 7 HOH HOH . 
K 5 HOH A 22 522 57 HOH HOH . 
K 5 HOH A 23 523 46 HOH HOH . 
K 5 HOH A 24 524 24 HOH HOH . 
K 5 HOH A 25 525 58 HOH HOH . 
K 5 HOH A 26 526 52 HOH HOH . 
K 5 HOH A 27 527 63 HOH HOH . 
K 5 HOH A 28 528 47 HOH HOH . 
K 5 HOH A 29 529 33 HOH HOH . 
K 5 HOH A 30 530 65 HOH HOH . 
K 5 HOH A 31 531 61 HOH HOH . 
L 5 HOH B 1 501 11 HOH HOH . 
L 5 HOH B 2 502 26 HOH HOH . 
L 5 HOH B 3 503 22 HOH HOH . 
L 5 HOH B 4 504 55 HOH HOH . 
L 5 HOH B 5 505 23 HOH HOH . 
L 5 HOH B 6 506 2 HOH HOH . 
L 5 HOH B 7 507 12 HOH HOH . 
L 5 HOH B 8 508 28 HOH HOH . 
L 5 HOH B 9 509 42 HOH HOH . 
L 5 HOH B 10 510 17 HOH HOH . 
L 5 HOH B 11 511 54 HOH HOH . 
L 5 HOH B 12 512 16 HOH HOH . 
L 5 HOH B 13 513 20 HOH HOH . 
L 5 HOH B 14 514 3 HOH HOH . 
L 5 HOH B 15 515 37 HOH HOH . 
L 5 HOH B 16 516 60 HOH HOH . 
L 5 HOH B 17 517 48 HOH HOH . 
L 5 HOH B 18 518 66 HOH HOH . 
L 5 HOH B 19 519 35 HOH HOH . 
L 5 HOH B 20 520 18 HOH HOH . 
L 5 HOH B 21 521 9 HOH HOH . 
L 5 HOH B 22 522 49 HOH HOH . 
L 5 HOH B 23 523 6 HOH HOH . 
L 5 HOH B 24 524 19 HOH HOH . 
L 5 HOH B 25 525 32 HOH HOH . 
L 5 HOH B 26 526 10 HOH HOH . 
L 5 HOH B 27 527 50 HOH HOH . 
L 5 HOH B 28 528 40 HOH HOH . 
L 5 HOH B 29 529 64 HOH HOH . 
L 5 HOH B 30 530 41 HOH HOH . 
L 5 HOH B 31 531 67 HOH HOH . 
L 5 HOH B 32 532 56 HOH HOH . 
L 5 HOH B 33 533 34 HOH HOH . 
L 5 HOH B 34 534 62 HOH HOH . 
L 5 HOH B 35 535 53 HOH HOH . 
L 5 HOH B 36 536 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 4 -6.781 4.131 31.399 1 30.27 ? C1 EDO 402 A 1 
HETATM 2 O O1 EDO . . . H 4 -6.122 4.512 32.611 1 31.15 ? O1 EDO 402 A 1 
HETATM 3 C C2 EDO . . . H 4 -5.873 3.191 30.621 1 27.62 ? C2 EDO 402 A 1 
HETATM 4 O O2 EDO . . . H 4 -5.413 2.158 31.497 1 24.81 ? O2 EDO 402 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#