data_8SZF # _model_server_result.job_id WYxdD6F0fCc9R35CiShUZw _model_server_result.datetime_utc '2024-11-22 23:41:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8szf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1208}' # _entry.id 8SZF # _exptl.entry_id 8SZF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 357.412 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SZF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 M N N ? 8 S N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 904 NAG 3 n C NAG 2 C 2 NAG A 905 NAG 3 n D NAG 1 D 1 NAG A 906 NAG 3 n D NAG 2 D 2 NAG A 907 NAG 3 n E NAG 1 E 1 NAG B 905 NAG 3 n E NAG 2 E 2 NAG B 906 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 60 1_555 A SG CYS 93 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 228 A CYS 236 1_555 A SG CYS 553 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 350 A CYS 358 1_555 A SG CYS 387 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 429 A CYS 437 1_555 A SG CYS 441 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 534 A CYS 542 1_555 A SG CYS 554 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 538 A CYS 546 1_555 A SG CYS 557 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 560 A CYS 568 1_555 A SG CYS 574 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 577 A CYS 585 1_555 A SG CYS 590 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 A SG CYS 669 A CYS 677 1_555 A SG CYS 757 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 B SG CYS 74 B CYS 60 1_555 B SG CYS 115 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 B SG CYS 250 B CYS 236 1_555 B SG CYS 575 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 372 B CYS 358 1_555 B SG CYS 409 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 B SG CYS 451 B CYS 437 1_555 B SG CYS 463 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 556 B CYS 542 1_555 B SG CYS 576 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 B SG CYS 560 B CYS 546 1_555 B SG CYS 579 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 B SG CYS 582 B CYS 568 1_555 B SG CYS 596 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 B SG CYS 599 B CYS 585 1_555 B SG CYS 612 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf18 B SG CYS 691 B CYS 677 1_555 B SG CYS 779 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 253 A ASN 261 1_555 F C1 NAG . A NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 460 A ASN 468 1_555 G C1 NAG . A NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 480 A ASN 488 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 533 A ASN 541 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 275 B ASN 261 1_555 T C1 NAG . B NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 B ND2 ASN 482 B ASN 468 1_555 O C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 B ND2 ASN 502 B ASN 488 1_555 N C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 555 B ASN 541 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A O SER 76 A SER 84 1_555 I CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc2 A O LEU 79 A LEU 87 1_555 I CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 A O LEU 80 A LEU 88 1_555 I CA CA . A CA 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc4 A OD1 ASP 226 A ASP 234 1_555 K CA CA . A CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 A O GLY 549 A GLY 557 1_555 J CA CA . A CA 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 K CA CA . A CA 1206 1_555 B O GLY 571 B GLY 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc7 B O SER 98 B SER 84 1_555 Q CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc8 B O LEU 102 B LEU 88 1_555 Q CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? # _chem_comp.formula 'C22 H22 F3 N' _chem_comp.formula_weight 357.412 _chem_comp.id YP4 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N YP4 sing 447 n n C3 C4 YP4 sing 448 n n N CA YP4 sing 449 n n C5 C4 YP4 sing 450 n n C5 C6 YP4 sing 451 n n C11 C6 YP4 doub 452 n y C11 C10 YP4 sing 453 n y C1 CA YP4 sing 454 n n CA CB YP4 sing 455 n n C6 C7 YP4 sing 456 n y C10 C9 YP4 doub 457 n y C14 CB YP4 doub 458 n y C14 C15 YP4 sing 459 n y CB CG YP4 sing 460 n y C7 C8 YP4 doub 461 n y C15 C16 YP4 doub 462 n y C9 C8 YP4 sing 463 n y C8 C12 YP4 sing 464 n n CG CD2 YP4 doub 465 n y CG CD1 YP4 sing 466 n y CD2 CE2 YP4 sing 467 n y C16 CD1 YP4 sing 468 n y CD1 CE1 YP4 doub 469 n y F2 C12 YP4 sing 470 n n C12 F3 YP4 sing 471 n n C12 F1 YP4 sing 472 n n CE2 CZ YP4 doub 473 n y CE1 CZ YP4 sing 474 n y C1 H1 YP4 sing 475 n n C1 H2 YP4 sing 476 n n C1 H3 YP4 sing 477 n n C3 H4 YP4 sing 478 n n C3 H5 YP4 sing 479 n n C4 H6 YP4 sing 480 n n C4 H7 YP4 sing 481 n n C5 H8 YP4 sing 482 n n C5 H9 YP4 sing 483 n n N H10 YP4 sing 484 n n CA H12 YP4 sing 485 n n CD2 H13 YP4 sing 486 n n CE1 H14 YP4 sing 487 n n CE2 H15 YP4 sing 488 n n CZ H16 YP4 sing 489 n n C7 H17 YP4 sing 490 n n C9 H18 YP4 sing 491 n n C10 H19 YP4 sing 492 n n C11 H20 YP4 sing 493 n n C14 H21 YP4 sing 494 n n C15 H22 YP4 sing 495 n n C16 H23 YP4 sing 496 n n # _atom_sites.entry_id 8SZF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 1201 901 NAG NAG . G 4 NAG A 1 1202 903 NAG NAG . H 5 TRP A 1 1203 910 TRP TRP . I 6 CA A 1 1204 911 CA CA . J 6 CA A 1 1205 912 CA CA . K 6 CA A 1 1206 913 CA CA . L 7 PO4 A 1 1207 914 PO4 PO4 . M 8 YP4 A 1 1208 1001 YP4 YP4 . N 4 NAG B 1 1001 903 NAG NAG . O 4 NAG B 1 1002 904 NAG NAG . P 5 TRP B 1 1003 910 TRP TRP . Q 6 CA B 1 1004 911 CA CA . R 7 PO4 B 1 1005 912 PO4 PO4 . S 8 YP4 B 1 1006 1002 YP4 YP4 . T 4 NAG B 1 1007 1003 NAG NAG . U 9 SPM B 1 1008 1101 SPM SPM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YP4 . . . M 8 202.411 194.248 242.919 1 47.88 ? C1 YP4 1208 A 1 HETATM 2 C C3 YP4 . . . M 8 200.736 197.36 242.091 1 49.99 ? C3 YP4 1208 A 1 HETATM 3 C C4 YP4 . . . M 8 200.54 198.056 240.734 1 51.03 ? C4 YP4 1208 A 1 HETATM 4 C C5 YP4 . . . M 8 199.943 199.468 240.906 1 52.09 ? C5 YP4 1208 A 1 HETATM 5 C C6 YP4 . . . M 8 200.728 200.379 241.884 1 52.55 ? C6 YP4 1208 A 1 HETATM 6 N N YP4 . . . M 8 200.936 195.929 241.937 1 48.45 ? N YP4 1208 A 1 HETATM 7 C CA YP4 . . . M 8 201.44 195.384 243.207 1 46.96 ? CA YP4 1208 A 1 HETATM 8 C CB YP4 . . . M 8 200.229 194.961 244.069 1 47.15 ? CB YP4 1208 A 1 HETATM 9 C CG YP4 . . . M 8 199.952 195.67 245.269 1 50.67 ? CG YP4 1208 A 1 HETATM 10 C CD1 YP4 . . . M 8 198.889 195.318 246.031 1 48.65 ? CD1 YP4 1208 A 1 HETATM 11 C CD2 YP4 . . . M 8 200.793 196.747 245.662 1 51.43 ? CD2 YP4 1208 A 1 HETATM 12 C CE1 YP4 . . . M 8 198.623 196.037 247.233 1 49.82 ? CE1 YP4 1208 A 1 HETATM 13 C CE2 YP4 . . . M 8 200.536 197.448 246.834 1 46.67 ? CE2 YP4 1208 A 1 HETATM 14 C CZ YP4 . . . M 8 199.444 197.085 247.615 1 49.84 ? CZ YP4 1208 A 1 HETATM 15 C C7 YP4 . . . M 8 200.112 200.853 243.034 1 50.13 ? C7 YP4 1208 A 1 HETATM 16 C C8 YP4 . . . M 8 200.799 201.676 243.91 1 51.09 ? C8 YP4 1208 A 1 HETATM 17 C C9 YP4 . . . M 8 202.107 202.046 243.644 1 50.55 ? C9 YP4 1208 A 1 HETATM 18 C C10 YP4 . . . M 8 202.727 201.585 242.491 1 51.68 ? C10 YP4 1208 A 1 HETATM 19 C C11 YP4 . . . M 8 202.037 200.756 241.614 1 52.66 ? C11 YP4 1208 A 1 HETATM 20 C C12 YP4 . . . M 8 200.104 202.161 245.169 1 54.24 ? C12 YP4 1208 A 1 HETATM 21 C C14 YP4 . . . M 8 199.404 193.908 243.686 1 47.98 ? C14 YP4 1208 A 1 HETATM 22 C C15 YP4 . . . M 8 198.312 193.545 244.466 1 48.16 ? C15 YP4 1208 A 1 HETATM 23 C C16 YP4 . . . M 8 198.047 194.239 245.637 1 48.31 ? C16 YP4 1208 A 1 HETATM 24 F F1 YP4 . . . M 8 199.234 201.206 245.587 1 57.68 ? F1 YP4 1208 A 1 HETATM 25 F F2 YP4 . . . M 8 199.413 203.293 244.898 1 52.37 ? F2 YP4 1208 A 1 HETATM 26 F F3 YP4 . . . M 8 201.021 202.396 246.148 1 51.68 ? F3 YP4 1208 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #