data_8SZH # _model_server_result.job_id DbYadb6PA0ifi-dt6abkuA _model_server_result.datetime_utc '2024-10-18 05:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8szh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1402}' # _entry.id 8SZH # _exptl.entry_id 8SZH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 357.412 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SZH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 S N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F NAG 1 F 1 NAG A 905 NAG 5 n F NAG 2 F 2 NAG A 906 NAG 5 n G NAG 1 G 1 NAG A 907 NAG 5 n G NAG 2 G 2 NAG A 908 NAG 5 n H NAG 1 H 1 NAG B 906 NAG 5 n H NAG 2 H 2 NAG B 907 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 60 1_555 A SG CYS 93 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 228 A CYS 236 1_555 A SG CYS 553 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 350 A CYS 358 1_555 A SG CYS 387 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 429 A CYS 437 1_555 A SG CYS 441 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 534 A CYS 542 1_555 A SG CYS 554 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 538 A CYS 546 1_555 A SG CYS 557 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 560 A CYS 568 1_555 A SG CYS 574 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 577 A CYS 585 1_555 A SG CYS 590 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 669 A CYS 677 1_555 A SG CYS 757 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 52 B CYS 60 1_555 B SG CYS 93 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 B SG CYS 228 B CYS 236 1_555 B SG CYS 553 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 350 B CYS 358 1_555 B SG CYS 387 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 B SG CYS 429 B CYS 437 1_555 B SG CYS 441 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 B SG CYS 534 B CYS 542 1_555 B SG CYS 554 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 538 B CYS 546 1_555 B SG CYS 557 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 560 B CYS 568 1_555 B SG CYS 574 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 B SG CYS 577 B CYS 585 1_555 B SG CYS 590 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 B SG CYS 669 B CYS 677 1_555 B SG CYS 757 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 460 A ASN 468 1_555 K C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 480 A ASN 488 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 533 A ASN 541 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B ND2 ASN 460 B ASN 468 1_555 U C1 NAG . B NAG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 480 B ASN 488 1_555 V C1 NAG . B NAG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 B ND2 ASN 533 B ASN 541 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A O ILE 73 A ILE 81 1_555 L CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc2 A O SER 76 A SER 84 1_555 L CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc3 A O LEU 79 A LEU 87 1_555 L CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc4 A O LEU 80 A LEU 88 1_555 L CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc5 A OD1 ASP 226 A ASP 234 1_555 M CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc6 M CA CA . A CA 905 1_555 B O GLY 549 B GLY 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc7 B O ASN 74 B ASN 82 1_555 W CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc8 B O LEU 80 B LEU 88 1_555 W CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc9 B O LEU 83 B LEU 91 1_555 W CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? # _chem_comp.formula 'C22 H22 F3 N' _chem_comp.formula_weight 357.412 _chem_comp.id YP4 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N YP4 sing 664 n n C3 C4 YP4 sing 665 n n N CA YP4 sing 666 n n C5 C4 YP4 sing 667 n n C5 C6 YP4 sing 668 n n C11 C6 YP4 doub 669 n y C11 C10 YP4 sing 670 n y C1 CA YP4 sing 671 n n CA CB YP4 sing 672 n n C6 C7 YP4 sing 673 n y C10 C9 YP4 doub 674 n y C14 CB YP4 doub 675 n y C14 C15 YP4 sing 676 n y CB CG YP4 sing 677 n y C7 C8 YP4 doub 678 n y C15 C16 YP4 doub 679 n y C9 C8 YP4 sing 680 n y C8 C12 YP4 sing 681 n n CG CD2 YP4 doub 682 n y CG CD1 YP4 sing 683 n y CD2 CE2 YP4 sing 684 n y C16 CD1 YP4 sing 685 n y CD1 CE1 YP4 doub 686 n y F2 C12 YP4 sing 687 n n C12 F3 YP4 sing 688 n n C12 F1 YP4 sing 689 n n CE2 CZ YP4 doub 690 n y CE1 CZ YP4 sing 691 n y C1 H1 YP4 sing 692 n n C1 H2 YP4 sing 693 n n C1 H3 YP4 sing 694 n n C3 H4 YP4 sing 695 n n C3 H5 YP4 sing 696 n n C4 H6 YP4 sing 697 n n C4 H7 YP4 sing 698 n n C5 H8 YP4 sing 699 n n C5 H9 YP4 sing 700 n n N H10 YP4 sing 701 n n CA H12 YP4 sing 702 n n CD2 H13 YP4 sing 703 n n CE1 H14 YP4 sing 704 n n CE2 H15 YP4 sing 705 n n CZ H16 YP4 sing 706 n n C7 H17 YP4 sing 707 n n C9 H18 YP4 sing 708 n n C10 H19 YP4 sing 709 n n C11 H20 YP4 sing 710 n n C14 H21 YP4 sing 711 n n C15 H22 YP4 sing 712 n n C16 H23 YP4 sing 713 n n # _atom_sites.entry_id 8SZH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 YP4 A 1 901 900 YP4 YP4 . J 7 PCW A 1 902 901 PCW PCW . K 8 NAG A 1 903 904 NAG NAG . L 9 CA A 1 904 1001 CA CA . M 9 CA A 1 905 1002 CA CA . N 10 TRP A 1 906 1003 TRP TRP . O 11 PO4 A 1 907 1004 PO4 PO4 . P 12 SPM A 1 908 1301 SPM SPM . Q 12 SPM A 1 909 1401 SPM SPM . R 13 CLR B 1 1401 1401 CLR CLR . S 6 YP4 B 1 1402 900 YP4 YP4 . T 7 PCW B 1 1403 901 PCW PCW . U 8 NAG B 1 1404 904 NAG NAG . V 8 NAG B 1 1405 905 NAG NAG . W 9 CA B 1 1406 1001 CA CA . X 9 CA B 1 1407 1002 CA CA . Y 10 TRP B 1 1408 1003 TRP TRP . Z 11 PO4 B 1 1409 1004 PO4 PO4 . AA 12 SPM B 1 1410 1201 SPM SPM . BA 12 SPM B 1 1411 1301 SPM SPM . CA 14 HOH B 1 1501 1005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YP4 . . . S 6 200.573 185.208 204.777 1 46.23 ? C1 YP4 1402 B 1 HETATM 2 C C3 YP4 . . . S 6 203.186 186.012 206.218 1 48.79 ? C3 YP4 1402 B 1 HETATM 3 C C4 YP4 . . . S 6 203.962 185.952 207.549 1 48.28 ? C4 YP4 1402 B 1 HETATM 4 C C5 YP4 . . . S 6 205.467 185.691 207.326 1 50.24 ? C5 YP4 1402 B 1 HETATM 5 C C6 YP4 . . . S 6 206.222 185.447 208.653 1 50.07 ? C6 YP4 1402 B 1 HETATM 6 N N YP4 . . . S 6 202.705 184.683 205.865 1 47.85 ? N YP4 1402 B 1 HETATM 7 C CA YP4 . . . S 6 202.007 184.731 204.569 1 47.57 ? CA YP4 1402 B 1 HETATM 8 C CB YP4 . . . S 6 202.063 183.326 203.926 1 47.92 ? CB YP4 1402 B 1 HETATM 9 C CG YP4 . . . S 6 202.862 183.105 202.764 1 48.23 ? CG YP4 1402 B 1 HETATM 10 C CD1 YP4 . . . S 6 202.912 181.866 202.198 1 45.02 ? CD1 YP4 1402 B 1 HETATM 11 C CD2 YP4 . . . S 6 203.606 184.177 202.196 1 49.33 ? CD2 YP4 1402 B 1 HETATM 12 C CE1 YP4 . . . S 6 203.714 181.644 201.032 1 45.59 ? CE1 YP4 1402 B 1 HETATM 13 C CE2 YP4 . . . S 6 204.388 183.958 201.058 1 47.72 ? CE2 YP4 1402 B 1 HETATM 14 C CZ YP4 . . . S 6 204.439 182.69 200.478 1 47.16 ? CZ YP4 1402 B 1 HETATM 15 C C7 YP4 . . . S 6 207.455 184.805 208.641 1 47.6 ? C7 YP4 1402 B 1 HETATM 16 C C8 YP4 . . . S 6 208.133 184.586 209.833 1 49.47 ? C8 YP4 1402 B 1 HETATM 17 C C9 YP4 . . . S 6 207.582 185.008 211.034 1 48.51 ? C9 YP4 1402 B 1 HETATM 18 C C10 YP4 . . . S 6 206.35 185.65 211.045 1 50.17 ? C10 YP4 1402 B 1 HETATM 19 C C11 YP4 . . . S 6 205.67 185.869 209.853 1 50.83 ? C11 YP4 1402 B 1 HETATM 20 C C12 YP4 . . . S 6 209.484 183.883 209.823 1 53.46 ? C12 YP4 1402 B 1 HETATM 21 C C14 YP4 . . . S 6 201.335 182.276 204.482 1 48.64 ? C14 YP4 1402 B 1 HETATM 22 C C15 YP4 . . . S 6 201.387 181.008 203.903 1 50.12 ? C15 YP4 1402 B 1 HETATM 23 C C16 YP4 . . . S 6 202.166 180.791 202.77 1 48.28 ? C16 YP4 1402 B 1 HETATM 24 F F1 YP4 . . . S 6 209.381 182.712 209.131 1 52.33 ? F1 YP4 1402 B 1 HETATM 25 F F2 YP4 . . . S 6 209.862 183.619 211.105 1 51.84 ? F2 YP4 1402 B 1 HETATM 26 F F3 YP4 . . . S 6 210.415 184.686 209.229 1 55.37 ? F3 YP4 1402 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #