data_8SZI # _model_server_result.job_id ex5qOX1Ft4_PVV3Bsjm_lA _model_server_result.datetime_utc '2024-10-18 05:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8szi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1401}' # _entry.id 8SZI # _exptl.entry_id 8SZI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SZI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 6 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 F 1 NAG A 905 NAG 6 n F NAG 2 F 2 NAG A 906 NAG 6 n G NAG 1 G 1 NAG A 907 NAG 6 n G NAG 2 G 2 NAG A 908 NAG 6 n H NAG 1 H 1 NAG B 906 NAG 6 n H NAG 2 H 2 NAG B 907 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 52 A CYS 60 1_555 D SG CYS 93 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 D SG CYS 228 A CYS 236 1_555 D SG CYS 553 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 D SG CYS 350 A CYS 358 1_555 D SG CYS 387 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 429 A CYS 437 1_555 D SG CYS 441 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 534 A CYS 542 1_555 D SG CYS 554 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 538 A CYS 546 1_555 D SG CYS 557 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 560 A CYS 568 1_555 D SG CYS 574 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 D SG CYS 577 A CYS 585 1_555 D SG CYS 590 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 D SG CYS 669 A CYS 677 1_555 D SG CYS 757 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 E SG CYS 74 B CYS 60 1_555 E SG CYS 115 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 E SG CYS 250 B CYS 236 1_555 E SG CYS 575 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 E SG CYS 372 B CYS 358 1_555 E SG CYS 409 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 E SG CYS 451 B CYS 437 1_555 E SG CYS 463 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 E SG CYS 556 B CYS 542 1_555 E SG CYS 576 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf15 E SG CYS 560 B CYS 546 1_555 E SG CYS 579 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 E SG CYS 582 B CYS 568 1_555 E SG CYS 596 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 E SG CYS 599 B CYS 585 1_555 E SG CYS 612 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 E SG CYS 691 B CYS 677 1_555 E SG CYS 779 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 D ND2 ASN 460 A ASN 468 1_555 J C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 D ND2 ASN 480 A ASN 488 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 D ND2 ASN 533 A ASN 541 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 E ND2 ASN 482 B ASN 468 1_555 R C1 NAG . B NAG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E ND2 ASN 502 B ASN 488 1_555 S C1 NAG . B NAG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 E ND2 ASN 555 B ASN 541 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 D O SER 76 A SER 84 1_555 K CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc2 D O LEU 79 A LEU 87 1_555 K CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 D O LEU 80 A LEU 88 1_555 K CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc4 D OD1 ASP 226 A ASP 234 1_555 L CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc5 D O GLY 549 A GLY 557 1_555 U CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc6 L CA CA . A CA 1004 1_555 E O GLY 571 B GLY 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc7 E O LEU 102 B LEU 88 1_555 T CA CA . B CA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 E O LEU 105 B LEU 91 1_555 T CA CA . B CA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc9 E OD1 ASP 248 B ASP 234 1_555 U CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc10 E OD2 ASP 248 B ASP 234 1_555 U CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8SZI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 PCW A 1 1001 901 PCW PCW . J 8 NAG A 1 1002 904 NAG NAG . K 9 CA A 1 1003 1001 CA CA . L 9 CA A 1 1004 1002 CA CA . M 10 TRP A 1 1005 1003 TRP TRP . N 11 PO4 A 1 1006 1004 PO4 PO4 . O 10 TRP A 1 1007 1100 TRP TRP . P 12 CLR B 1 1401 1401 CLR CLR . Q 7 PCW B 1 1402 901 PCW PCW . R 8 NAG B 1 1403 904 NAG NAG . S 8 NAG B 1 1404 905 NAG NAG . T 9 CA B 1 1405 1001 CA CA . U 9 CA B 1 1406 1002 CA CA . V 10 TRP B 1 1407 1003 TRP TRP . W 11 PO4 B 1 1408 1004 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . P 12 208.173 187.073 241.497 1 65.62 ? C1 CLR 1401 B 1 HETATM 2 C C2 CLR . . . P 12 207.721 186.453 242.822 1 65.62 ? C2 CLR 1401 B 1 HETATM 3 C C3 CLR . . . P 12 206.195 186.464 242.889 1 65.62 ? C3 CLR 1401 B 1 HETATM 4 C C4 CLR . . . P 12 205.65 185.532 241.808 1 65.62 ? C4 CLR 1401 B 1 HETATM 5 C C5 CLR . . . P 12 206.198 185.975 240.462 1 65.62 ? C5 CLR 1401 B 1 HETATM 6 C C6 CLR . . . P 12 205.357 186.115 239.482 1 65.62 ? C6 CLR 1401 B 1 HETATM 7 C C7 CLR . . . P 12 205.754 186.543 238.098 1 65.62 ? C7 CLR 1401 B 1 HETATM 8 C C8 CLR . . . P 12 207.24 186.259 237.855 1 65.62 ? C8 CLR 1401 B 1 HETATM 9 C C9 CLR . . . P 12 208.046 186.874 239.006 1 65.62 ? C9 CLR 1401 B 1 HETATM 10 C C10 CLR . . . P 12 207.67 186.22 240.327 1 65.62 ? C10 CLR 1401 B 1 HETATM 11 C C11 CLR . . . P 12 209.548 186.775 238.762 1 65.62 ? C11 CLR 1401 B 1 HETATM 12 C C12 CLR . . . P 12 209.938 187.438 237.435 1 65.62 ? C12 CLR 1401 B 1 HETATM 13 C C13 CLR . . . P 12 209.168 186.783 236.285 1 65.62 ? C13 CLR 1401 B 1 HETATM 14 C C14 CLR . . . P 12 207.645 186.941 236.558 1 65.62 ? C14 CLR 1401 B 1 HETATM 15 C C15 CLR . . . P 12 207.052 186.341 235.277 1 65.62 ? C15 CLR 1401 B 1 HETATM 16 C C16 CLR . . . P 12 208.002 186.878 234.171 1 65.62 ? C16 CLR 1401 B 1 HETATM 17 C C17 CLR . . . P 12 209.263 187.412 234.896 1 65.62 ? C17 CLR 1401 B 1 HETATM 18 C C18 CLR . . . P 12 209.488 185.288 236.201 1 65.62 ? C18 CLR 1401 B 1 HETATM 19 C C19 CLR . . . P 12 208.376 184.864 240.384 1 65.62 ? C19 CLR 1401 B 1 HETATM 20 C C20 CLR . . . P 12 210.53 187.003 234.135 1 65.62 ? C20 CLR 1401 B 1 HETATM 21 C C21 CLR . . . P 12 211.68 187.956 234.475 1 65.62 ? C21 CLR 1401 B 1 HETATM 22 C C22 CLR . . . P 12 210.275 187.077 232.628 1 65.62 ? C22 CLR 1401 B 1 HETATM 23 C C23 CLR . . . P 12 211.576 186.81 231.873 1 65.62 ? C23 CLR 1401 B 1 HETATM 24 C C24 CLR . . . P 12 211.639 187.688 230.622 1 65.62 ? C24 CLR 1401 B 1 HETATM 25 C C25 CLR . . . P 12 212.113 189.091 231 1 65.62 ? C25 CLR 1401 B 1 HETATM 26 C C26 CLR . . . P 12 213.574 189.04 231.452 1 65.62 ? C26 CLR 1401 B 1 HETATM 27 C C27 CLR . . . P 12 211.986 190.019 229.79 1 65.62 ? C27 CLR 1401 B 1 HETATM 28 O O1 CLR . . . P 12 205.768 186.005 244.173 1 65.62 ? O1 CLR 1401 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #