data_8SZM
#
_model_server_result.job_id            0dlBVkQHtRNPuazaO09i9w 
_model_server_result.datetime_utc      '2024-10-11 05:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8szm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":301}' 
#
_entry.id    8SZM 
#
_exptl.entry_id    8SZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              629.478 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl}-2-methyl-N-(2-{[2-(trifluoromethyl)phenyl]sulfanyl}ethyl)propanamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.72 
_cell.angle_gamma         90 
_cell.entry_id            8SZM 
_cell.length_a            93.968 
_cell.length_b            187.589 
_cell.length_c            169.408 
_cell.Z_PDB               56 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetradecameric 14 author_and_software_defined_assembly 1 
PISA tetradecameric 14 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,CA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA 1 1 
V,W,X,Y,Z,AA,BA,DA,EA,AB,BB,CB,DB,EB,FB,GB 2 1 
O,P,Q,R,S,T,U,TA,UA,VA,WA,XA,YA,ZA 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_454 -x-1,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -82.9767 93.7945 -169.051063 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
#
_chem_comp.formula           'C25 H21 F9 N3 O2 P S' 
_chem_comp.formula_weight    629.478 
_chem_comp.id                X3O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl}-2-methyl-N-(2-{[2-(trifluoromethyl)phenyl]sulfanyl}ethyl)propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C30 C13 X3O sing 348 n n 
F37 C36 X3O sing 349 n n 
C31 C13 X3O sing 350 n n 
C40 C41 X3O doub 351 n y 
C40 C35 X3O sing 352 n y 
O29 C14 X3O doub 353 n n 
C13 C14 X3O sing 354 n n 
C13 P02 X3O sing 355 n n 
C41 C32 X3O sing 356 n y 
F24 C21 X3O sing 357 n n 
C36 C35 X3O sing 358 n n 
C36 F38 X3O sing 359 n n 
C36 F39 X3O sing 360 n n 
C14 N15 X3O sing 361 n n 
C35 C34 X3O doub 362 n y 
C32 P02 X3O sing 363 n n 
C32 N33 X3O doub 364 n y 
C21 F23 X3O sing 365 n n 
C21 C20 X3O sing 366 n n 
C21 F22 X3O sing 367 n n 
S18 C19 X3O sing 368 n n 
S18 C17 X3O sing 369 n n 
P02 C03 X3O sing 370 n n 
P02 O01 X3O doub 371 n n 
N15 C16 X3O sing 372 n n 
C34 N33 X3O sing 373 n y 
C20 C19 X3O doub 374 n y 
C20 C25 X3O sing 375 n y 
C19 C28 X3O sing 376 n y 
C04 C03 X3O doub 377 n y 
C04 C05 X3O sing 378 n y 
C16 C17 X3O sing 379 n n 
C25 C26 X3O doub 380 n y 
C03 N12 X3O sing 381 n y 
C28 C27 X3O doub 382 n y 
C05 C06 X3O doub 383 n y 
C26 C27 X3O sing 384 n y 
N12 C11 X3O doub 385 n y 
F09 C07 X3O sing 386 n n 
C06 C11 X3O sing 387 n y 
C06 C07 X3O sing 388 n n 
C07 F08 X3O sing 389 n n 
C07 F10 X3O sing 390 n n 
C11 H1 X3O sing 391 n n 
C16 H2 X3O sing 392 n n 
C16 H3 X3O sing 393 n n 
C17 H4 X3O sing 394 n n 
C17 H5 X3O sing 395 n n 
C25 H6 X3O sing 396 n n 
C26 H7 X3O sing 397 n n 
C27 H8 X3O sing 398 n n 
C28 H9 X3O sing 399 n n 
C04 H10 X3O sing 400 n n 
C05 H11 X3O sing 401 n n 
C30 H12 X3O sing 402 n n 
C30 H13 X3O sing 403 n n 
C30 H14 X3O sing 404 n n 
C31 H15 X3O sing 405 n n 
C31 H16 X3O sing 406 n n 
C31 H17 X3O sing 407 n n 
C34 H18 X3O sing 408 n n 
C40 H19 X3O sing 409 n n 
C41 H20 X3O sing 410 n n 
N15 H21 X3O sing 411 n n 
#
_atom_sites.entry_id                     8SZM 
_atom_sites.fract_transf_matrix[1][1]    0.010642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000692 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 2 X3O G 1 301 6 X3O FL1 . 
DA 2 X3O X 1 301 4 X3O FL1 . 
EA 2 X3O Z 1 301 5 X3O FL1 . 
FA 3 HOH H 1 301 15 HOH HOH . 
FA 3 HOH H 2 302 97 HOH HOH . 
FA 3 HOH H 3 303 7 HOH HOH . 
FA 3 HOH H 4 304 66 HOH HOH . 
GA 3 HOH I 1 301 14 HOH HOH . 
GA 3 HOH I 2 302 104 HOH HOH . 
GA 3 HOH I 3 303 25 HOH HOH . 
GA 3 HOH I 4 304 128 HOH HOH . 
GA 3 HOH I 5 305 11 HOH HOH . 
HA 3 HOH J 1 301 4 HOH HOH . 
HA 3 HOH J 2 302 47 HOH HOH . 
HA 3 HOH J 3 303 44 HOH HOH . 
HA 3 HOH J 4 304 109 HOH HOH . 
HA 3 HOH J 5 305 113 HOH HOH . 
IA 3 HOH K 1 301 19 HOH HOH . 
IA 3 HOH K 2 302 71 HOH HOH . 
IA 3 HOH K 3 303 56 HOH HOH . 
IA 3 HOH K 4 304 64 HOH HOH . 
IA 3 HOH K 5 305 70 HOH HOH . 
IA 3 HOH K 6 306 83 HOH HOH . 
IA 3 HOH K 7 307 72 HOH HOH . 
JA 3 HOH L 1 301 23 HOH HOH . 
JA 3 HOH L 2 302 96 HOH HOH . 
JA 3 HOH L 3 303 62 HOH HOH . 
JA 3 HOH L 4 304 29 HOH HOH . 
JA 3 HOH L 5 305 112 HOH HOH . 
JA 3 HOH L 6 306 124 HOH HOH . 
JA 3 HOH L 7 307 129 HOH HOH . 
KA 3 HOH M 1 301 123 HOH HOH . 
KA 3 HOH M 2 302 69 HOH HOH . 
KA 3 HOH M 3 303 53 HOH HOH . 
KA 3 HOH M 4 304 108 HOH HOH . 
KA 3 HOH M 5 305 121 HOH HOH . 
KA 3 HOH M 6 306 127 HOH HOH . 
LA 3 HOH N 1 301 132 HOH HOH . 
LA 3 HOH N 2 302 126 HOH HOH . 
LA 3 HOH N 3 303 77 HOH HOH . 
LA 3 HOH N 4 304 33 HOH HOH . 
LA 3 HOH N 5 305 115 HOH HOH . 
MA 3 HOH A 1 301 89 HOH HOH . 
MA 3 HOH A 2 302 35 HOH HOH . 
MA 3 HOH A 3 303 84 HOH HOH . 
MA 3 HOH A 4 304 59 HOH HOH . 
MA 3 HOH A 5 305 105 HOH HOH . 
NA 3 HOH B 1 301 1 HOH HOH . 
NA 3 HOH B 2 302 40 HOH HOH . 
OA 3 HOH C 1 301 120 HOH HOH . 
OA 3 HOH C 2 302 111 HOH HOH . 
OA 3 HOH C 3 303 39 HOH HOH . 
OA 3 HOH C 4 304 2 HOH HOH . 
OA 3 HOH C 5 305 3 HOH HOH . 
OA 3 HOH C 6 306 9 HOH HOH . 
OA 3 HOH C 7 307 5 HOH HOH . 
OA 3 HOH C 8 308 116 HOH HOH . 
OA 3 HOH C 9 309 80 HOH HOH . 
PA 3 HOH D 1 301 18 HOH HOH . 
PA 3 HOH D 2 302 6 HOH HOH . 
PA 3 HOH D 3 303 32 HOH HOH . 
PA 3 HOH D 4 304 61 HOH HOH . 
PA 3 HOH D 5 305 81 HOH HOH . 
PA 3 HOH D 6 306 63 HOH HOH . 
PA 3 HOH D 7 307 93 HOH HOH . 
PA 3 HOH D 8 308 31 HOH HOH . 
PA 3 HOH D 9 309 74 HOH HOH . 
PA 3 HOH D 10 310 103 HOH HOH . 
QA 3 HOH E 1 301 27 HOH HOH . 
QA 3 HOH E 2 302 67 HOH HOH . 
QA 3 HOH E 3 303 28 HOH HOH . 
QA 3 HOH E 4 304 137 HOH HOH . 
RA 3 HOH F 1 301 78 HOH HOH . 
RA 3 HOH F 2 302 17 HOH HOH . 
RA 3 HOH F 3 303 135 HOH HOH . 
RA 3 HOH F 4 304 94 HOH HOH . 
RA 3 HOH F 5 305 42 HOH HOH . 
RA 3 HOH F 6 306 54 HOH HOH . 
SA 3 HOH G 1 401 131 HOH HOH . 
SA 3 HOH G 2 402 95 HOH HOH . 
SA 3 HOH G 3 403 60 HOH HOH . 
SA 3 HOH G 4 404 85 HOH HOH . 
SA 3 HOH G 5 405 37 HOH HOH . 
SA 3 HOH G 6 406 20 HOH HOH . 
SA 3 HOH G 7 407 51 HOH HOH . 
SA 3 HOH G 8 408 125 HOH HOH . 
SA 3 HOH G 9 409 130 HOH HOH . 
SA 3 HOH G 10 410 49 HOH HOH . 
TA 3 HOH O 1 301 106 HOH HOH . 
TA 3 HOH O 2 302 110 HOH HOH . 
TA 3 HOH O 3 303 38 HOH HOH . 
TA 3 HOH O 4 304 117 HOH HOH . 
TA 3 HOH O 5 305 79 HOH HOH . 
UA 3 HOH P 1 301 22 HOH HOH . 
UA 3 HOH P 2 302 24 HOH HOH . 
UA 3 HOH P 3 303 82 HOH HOH . 
UA 3 HOH P 4 304 98 HOH HOH . 
UA 3 HOH P 5 305 134 HOH HOH . 
VA 3 HOH Q 1 301 10 HOH HOH . 
VA 3 HOH Q 2 302 57 HOH HOH . 
VA 3 HOH Q 3 303 34 HOH HOH . 
VA 3 HOH Q 4 304 99 HOH HOH . 
VA 3 HOH Q 5 305 138 HOH HOH . 
VA 3 HOH Q 6 306 119 HOH HOH . 
WA 3 HOH R 1 301 41 HOH HOH . 
WA 3 HOH R 2 302 133 HOH HOH . 
XA 3 HOH S 1 301 21 HOH HOH . 
XA 3 HOH S 2 302 65 HOH HOH . 
XA 3 HOH S 3 303 45 HOH HOH . 
YA 3 HOH T 1 301 122 HOH HOH . 
YA 3 HOH T 2 302 140 HOH HOH . 
ZA 3 HOH U 1 301 100 HOH HOH . 
ZA 3 HOH U 2 302 75 HOH HOH . 
ZA 3 HOH U 3 303 102 HOH HOH . 
AB 3 HOH V 1 301 13 HOH HOH . 
AB 3 HOH V 2 302 86 HOH HOH . 
AB 3 HOH V 3 303 12 HOH HOH . 
BB 3 HOH W 1 301 118 HOH HOH . 
BB 3 HOH W 2 302 46 HOH HOH . 
BB 3 HOH W 3 303 26 HOH HOH . 
BB 3 HOH W 4 304 58 HOH HOH . 
CB 3 HOH X 1 401 8 HOH HOH . 
CB 3 HOH X 2 402 76 HOH HOH . 
CB 3 HOH X 3 403 101 HOH HOH . 
CB 3 HOH X 4 404 36 HOH HOH . 
CB 3 HOH X 5 405 114 HOH HOH . 
DB 3 HOH Y 1 301 48 HOH HOH . 
DB 3 HOH Y 2 302 88 HOH HOH . 
DB 3 HOH Y 3 303 52 HOH HOH . 
DB 3 HOH Y 4 304 139 HOH HOH . 
EB 3 HOH Z 1 401 30 HOH HOH . 
EB 3 HOH Z 2 402 136 HOH HOH . 
EB 3 HOH Z 3 403 87 HOH HOH . 
FB 3 HOH a 1 301 73 HOH HOH . 
FB 3 HOH a 2 302 107 HOH HOH . 
GB 3 HOH b 1 301 50 HOH HOH . 
GB 3 HOH b 2 302 43 HOH HOH . 
GB 3 HOH b 3 303 16 HOH HOH . 
GB 3 HOH b 4 304 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 X3O . . . CA 2 -37.721 73.177 12.854 1 77.54 ? C11 X3O 301 G 1 
HETATM 2 C C13 X3O . . . CA 2 -33.635 75.754 14.017 1 80.7 ? C13 X3O 301 G 1 
HETATM 3 C C14 X3O . . . CA 2 -33.983 75.757 12.527 1 80.49 ? C14 X3O 301 G 1 
HETATM 4 C C16 X3O . . . CA 2 -34.786 76.984 10.515 1 71.28 ? C16 X3O 301 G 1 
HETATM 5 C C17 X3O . . . CA 2 -34.788 78.448 10.084 1 83.46 ? C17 X3O 301 G 1 
HETATM 6 C C19 X3O . . . CA 2 -32.976 80.742 9.339 1 88.05 ? C19 X3O 301 G 1 
HETATM 7 C C20 X3O . . . CA 2 -32.813 81.429 8.104 1 90.65 ? C20 X3O 301 G 1 
HETATM 8 C C21 X3O . . . CA 2 -32.782 80.717 6.71 1 90.73 ? C21 X3O 301 G 1 
HETATM 9 C C25 X3O . . . CA 2 -32.701 82.826 8.122 1 82.29 ? C25 X3O 301 G 1 
HETATM 10 C C26 X3O . . . CA 2 -32.728 83.526 9.318 1 84.05 ? C26 X3O 301 G 1 
HETATM 11 C C27 X3O . . . CA 2 -32.878 82.84 10.52 1 85.29 ? C27 X3O 301 G 1 
HETATM 12 C C28 X3O . . . CA 2 -33 81.459 10.534 1 79.97 ? C28 X3O 301 G 1 
HETATM 13 C C03 X3O . . . CA 2 -36.256 74.172 14.351 1 82.14 ? C03 X3O 301 G 1 
HETATM 14 C C04 X3O . . . CA 2 -36.215 73.004 15.109 1 80.45 ? C04 X3O 301 G 1 
HETATM 15 C C05 X3O . . . CA 2 -36.957 71.888 14.71 1 80.11 ? C05 X3O 301 G 1 
HETATM 16 C C06 X3O . . . CA 2 -37.732 71.967 13.546 1 76.78 ? C06 X3O 301 G 1 
HETATM 17 C C07 X3O . . . CA 2 -38.569 70.757 13.065 1 76.07 ? C07 X3O 301 G 1 
HETATM 18 C C30 X3O . . . CA 2 -32.781 74.525 14.324 1 78.23 ? C30 X3O 301 G 1 
HETATM 19 C C31 X3O . . . CA 2 -32.909 77.066 14.351 1 75.25 ? C31 X3O 301 G 1 
HETATM 20 C C32 X3O . . . CA 2 -35.127 75.385 16.767 1 84.17 ? C32 X3O 301 G 1 
HETATM 21 C C34 X3O . . . CA 2 -33.978 74.609 18.606 1 84.78 ? C34 X3O 301 G 1 
HETATM 22 C C35 X3O . . . CA 2 -35.009 75.009 19.44 1 90.07 ? C35 X3O 301 G 1 
HETATM 23 C C36 X3O . . . CA 2 -34.911 74.789 20.942 1 94.96 ? C36 X3O 301 G 1 
HETATM 24 C C40 X3O . . . CA 2 -36.143 75.607 18.915 1 89 ? C40 X3O 301 G 1 
HETATM 25 C C41 X3O . . . CA 2 -36.197 75.791 17.549 1 83.77 ? C41 X3O 301 G 1 
HETATM 26 F F08 X3O . . . CA 2 -37.874 69.99 12.15 1 77.74 ? F08 X3O 301 G 1 
HETATM 27 F F09 X3O . . . CA 2 -39.745 71.185 12.494 1 76.9 ? F09 X3O 301 G 1 
HETATM 28 F F10 X3O . . . CA 2 -38.873 69.977 14.151 1 77.01 ? F10 X3O 301 G 1 
HETATM 29 F F22 X3O . . . CA 2 -33.23 81.581 5.723 1 86.91 ? F22 X3O 301 G 1 
HETATM 30 F F23 X3O . . . CA 2 -33.587 79.594 6.697 1 80.86 ? F23 X3O 301 G 1 
HETATM 31 F F24 X3O . . . CA 2 -31.498 80.341 6.382 1 87.04 ? F24 X3O 301 G 1 
HETATM 32 F F37 X3O . . . CA 2 -35.708 75.703 21.573 1 100.06 ? F37 X3O 301 G 1 
HETATM 33 F F38 X3O . . . CA 2 -33.602 74.885 21.357 1 95.41 ? F38 X3O 301 G 1 
HETATM 34 F F39 X3O . . . CA 2 -35.405 73.548 21.194 1 91.37 ? F39 X3O 301 G 1 
HETATM 35 N N12 X3O . . . CA 2 -37.004 74.223 13.255 1 79.98 ? N12 X3O 301 G 1 
HETATM 36 N N15 X3O . . . CA 2 -34.458 76.987 11.927 1 78.95 ? N15 X3O 301 G 1 
HETATM 37 N N33 X3O . . . CA 2 -34.072 74.803 17.307 1 82.09 ? N33 X3O 301 G 1 
HETATM 38 O O01 X3O . . . CA 2 -35.97 76.9 14.666 1 88.07 ? O01 X3O 301 G 1 
HETATM 39 O O29 X3O . . . CA 2 -33.886 74.777 11.862 1 77.84 ? O29 X3O 301 G 1 
HETATM 40 P P02 X3O . . . CA 2 -35.257 75.646 14.926 1 89.46 ? P02 X3O 301 G 1 
HETATM 41 S S18 X3O . . . CA 2 -33.137 78.912 9.459 1 102.39 ? S18 X3O 301 G 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           41 
#