data_8SZP
#
_model_server_result.job_id            H2lkLYVyfREBHu9XGLgaiA 
_model_server_result.datetime_utc      '2025-07-16 06:05:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8szp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":1315}' 
#
_entry.id    8SZP 
#
_exptl.entry_id    8SZP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SZP 
_cell.length_a            119.1 
_cell.length_b            122.26 
_cell.length_c            349.18 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,EA 1 1 
B,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 W N N 
? 5 X N N 
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 270 A THR 418 1_555 D MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc2 A OE1 GLU 364 A GLU 512 1_555 D MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc3 C O3B ADP . A ADP 1301 1_555 D MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc4 D MG MG . A MG 1302 1_555 EA O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc5 D MG MG . A MG 1302 1_555 EA O HOH . A HOH 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc6 D MG MG . A MG 1302 1_555 EA O HOH . A HOH 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc7 B OG1 THR 270 B THR 418 1_555 P MG MG . B MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc8 B OE1 GLU 364 B GLU 512 1_555 P MG MG . B MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc9 O O1B ADP . B ADP 1301 1_555 P MG MG . B MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc10 P MG MG . B MG 1302 1_555 FA O HOH . B HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc11 P MG MG . B MG 1302 1_555 FA O HOH . B HOH 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc12 P MG MG . B MG 1302 1_555 FA O HOH . B HOH 1426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 127 n n 
C1 C2 EDO sing 128 n n 
C1 H11 EDO sing 129 n n 
C1 H12 EDO sing 130 n n 
O1 HO1 EDO sing 131 n n 
C2 O2 EDO sing 132 n n 
C2 H21 EDO sing 133 n n 
C2 H22 EDO sing 134 n n 
O2 HO2 EDO sing 135 n n 
#
_atom_sites.entry_id                     8SZP 
_atom_sites.fract_transf_matrix[1][1]    0.008396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002864 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 1301 1301 ADP ADP . 
D 3 MG A 1 1302 1311 MG MG . 
E 4 SO4 A 1 1303 1401 SO4 SO4 . 
F 4 SO4 A 1 1304 1402 SO4 SO4 . 
G 4 SO4 A 1 1305 1403 SO4 SO4 . 
H 4 SO4 A 1 1306 1404 SO4 SO4 . 
I 4 SO4 A 1 1307 1405 SO4 SO4 . 
J 4 SO4 A 1 1308 1406 SO4 SO4 . 
K 4 SO4 A 1 1309 1407 SO4 SO4 . 
L 5 EDO A 1 1310 1451 EDO EDO . 
M 5 EDO A 1 1311 1452 EDO EDO . 
N 5 EDO A 1 1312 1453 EDO EDO . 
O 2 ADP B 1 1301 1301 ADP ADP . 
P 3 MG B 1 1302 1311 MG MG . 
Q 4 SO4 B 1 1303 1401 SO4 SO4 . 
R 4 SO4 B 1 1304 1402 SO4 SO4 . 
S 4 SO4 B 1 1305 1403 SO4 SO4 . 
T 4 SO4 B 1 1306 1404 SO4 SO4 . 
U 4 SO4 B 1 1307 1405 SO4 SO4 . 
V 4 SO4 B 1 1308 1406 SO4 SO4 . 
W 5 EDO B 1 1309 1451 EDO EDO . 
X 5 EDO B 1 1310 1452 EDO EDO . 
Y 5 EDO B 1 1311 1453 EDO EDO . 
Z 5 EDO B 1 1312 1454 EDO EDO . 
AA 5 EDO B 1 1313 1455 EDO EDO . 
BA 5 EDO B 1 1314 1456 EDO EDO . 
CA 5 EDO B 1 1315 1457 EDO EDO . 
DA 5 EDO B 1 1316 1458 EDO EDO . 
EA 6 HOH A 1 1401 1503 HOH HOH . 
EA 6 HOH A 2 1402 1533 HOH HOH . 
EA 6 HOH A 3 1403 1521 HOH HOH . 
EA 6 HOH A 4 1404 1501 HOH HOH . 
EA 6 HOH A 5 1405 1566 HOH HOH . 
EA 6 HOH A 6 1406 1502 HOH HOH . 
EA 6 HOH A 7 1407 1543 HOH HOH . 
EA 6 HOH A 8 1408 1528 HOH HOH . 
EA 6 HOH A 9 1409 1518 HOH HOH . 
EA 6 HOH A 10 1410 1508 HOH HOH . 
EA 6 HOH A 11 1411 1513 HOH HOH . 
EA 6 HOH A 12 1412 1546 HOH HOH . 
EA 6 HOH A 13 1413 1505 HOH HOH . 
EA 6 HOH A 14 1414 1532 HOH HOH . 
EA 6 HOH A 15 1415 1544 HOH HOH . 
EA 6 HOH A 16 1416 1560 HOH HOH . 
EA 6 HOH A 17 1417 1549 HOH HOH . 
EA 6 HOH A 18 1418 1548 HOH HOH . 
EA 6 HOH A 19 1419 1509 HOH HOH . 
EA 6 HOH A 20 1420 1506 HOH HOH . 
EA 6 HOH A 21 1421 1517 HOH HOH . 
EA 6 HOH A 22 1422 1539 HOH HOH . 
EA 6 HOH A 23 1423 1538 HOH HOH . 
EA 6 HOH A 24 1424 1514 HOH HOH . 
EA 6 HOH A 25 1425 1552 HOH HOH . 
EA 6 HOH A 26 1426 1510 HOH HOH . 
EA 6 HOH A 27 1427 1540 HOH HOH . 
EA 6 HOH A 28 1428 1554 HOH HOH . 
EA 6 HOH A 29 1429 1542 HOH HOH . 
EA 6 HOH A 30 1430 1520 HOH HOH . 
EA 6 HOH A 31 1431 1516 HOH HOH . 
EA 6 HOH A 32 1432 1512 HOH HOH . 
EA 6 HOH A 33 1433 1545 HOH HOH . 
EA 6 HOH A 34 1434 1526 HOH HOH . 
EA 6 HOH A 35 1435 1507 HOH HOH . 
EA 6 HOH A 36 1436 1556 HOH HOH . 
EA 6 HOH A 37 1437 1535 HOH HOH . 
EA 6 HOH A 38 1438 1558 HOH HOH . 
EA 6 HOH A 39 1439 1551 HOH HOH . 
EA 6 HOH A 40 1440 1525 HOH HOH . 
EA 6 HOH A 41 1441 1511 HOH HOH . 
EA 6 HOH A 42 1442 1522 HOH HOH . 
EA 6 HOH A 43 1443 1519 HOH HOH . 
EA 6 HOH A 44 1444 1555 HOH HOH . 
EA 6 HOH A 45 1445 1559 HOH HOH . 
EA 6 HOH A 46 1446 1547 HOH HOH . 
EA 6 HOH A 47 1447 1534 HOH HOH . 
EA 6 HOH A 48 1448 1523 HOH HOH . 
EA 6 HOH A 49 1449 1515 HOH HOH . 
EA 6 HOH A 50 1450 1553 HOH HOH . 
EA 6 HOH A 51 1451 1537 HOH HOH . 
EA 6 HOH A 52 1452 1564 HOH HOH . 
EA 6 HOH A 53 1453 1567 HOH HOH . 
EA 6 HOH A 54 1454 1531 HOH HOH . 
EA 6 HOH A 55 1455 1563 HOH HOH . 
EA 6 HOH A 56 1456 1530 HOH HOH . 
EA 6 HOH A 57 1457 1504 HOH HOH . 
EA 6 HOH A 58 1458 1524 HOH HOH . 
EA 6 HOH A 59 1459 1560 HOH HOH . 
EA 6 HOH A 60 1460 1562 HOH HOH . 
EA 6 HOH A 61 1461 1561 HOH HOH . 
EA 6 HOH A 62 1462 1541 HOH HOH . 
EA 6 HOH A 63 1463 1557 HOH HOH . 
EA 6 HOH A 64 1464 1527 HOH HOH . 
EA 6 HOH A 65 1465 1536 HOH HOH . 
EA 6 HOH A 66 1466 1529 HOH HOH . 
EA 6 HOH A 67 1467 1550 HOH HOH . 
EA 6 HOH A 68 1468 1565 HOH HOH . 
FA 6 HOH B 1 1401 1546 HOH HOH . 
FA 6 HOH B 2 1402 1503 HOH HOH . 
FA 6 HOH B 3 1403 1527 HOH HOH . 
FA 6 HOH B 4 1404 1526 HOH HOH . 
FA 6 HOH B 5 1405 1540 HOH HOH . 
FA 6 HOH B 6 1406 1513 HOH HOH . 
FA 6 HOH B 7 1407 1545 HOH HOH . 
FA 6 HOH B 8 1408 1509 HOH HOH . 
FA 6 HOH B 9 1409 1512 HOH HOH . 
FA 6 HOH B 10 1410 1558 HOH HOH . 
FA 6 HOH B 11 1411 1549 HOH HOH . 
FA 6 HOH B 12 1412 1542 HOH HOH . 
FA 6 HOH B 13 1413 1524 HOH HOH . 
FA 6 HOH B 14 1414 1523 HOH HOH . 
FA 6 HOH B 15 1415 1534 HOH HOH . 
FA 6 HOH B 16 1416 1536 HOH HOH . 
FA 6 HOH B 17 1417 1515 HOH HOH . 
FA 6 HOH B 18 1418 1541 HOH HOH . 
FA 6 HOH B 19 1419 1525 HOH HOH . 
FA 6 HOH B 20 1420 1501 HOH HOH . 
FA 6 HOH B 21 1421 1518 HOH HOH . 
FA 6 HOH B 22 1422 1557 HOH HOH . 
FA 6 HOH B 23 1423 1555 HOH HOH . 
FA 6 HOH B 24 1424 1537 HOH HOH . 
FA 6 HOH B 25 1425 1552 HOH HOH . 
FA 6 HOH B 26 1426 1502 HOH HOH . 
FA 6 HOH B 27 1427 1530 HOH HOH . 
FA 6 HOH B 28 1428 1539 HOH HOH . 
FA 6 HOH B 29 1429 1551 HOH HOH . 
FA 6 HOH B 30 1430 1533 HOH HOH . 
FA 6 HOH B 31 1431 1563 HOH HOH . 
FA 6 HOH B 32 1432 1538 HOH HOH . 
FA 6 HOH B 33 1433 1514 HOH HOH . 
FA 6 HOH B 34 1434 1543 HOH HOH . 
FA 6 HOH B 35 1435 1506 HOH HOH . 
FA 6 HOH B 36 1436 1529 HOH HOH . 
FA 6 HOH B 37 1437 1516 HOH HOH . 
FA 6 HOH B 38 1438 1504 HOH HOH . 
FA 6 HOH B 39 1439 1532 HOH HOH . 
FA 6 HOH B 40 1440 1562 HOH HOH . 
FA 6 HOH B 41 1441 1520 HOH HOH . 
FA 6 HOH B 42 1442 1556 HOH HOH . 
FA 6 HOH B 43 1443 1508 HOH HOH . 
FA 6 HOH B 44 1444 1550 HOH HOH . 
FA 6 HOH B 45 1445 1544 HOH HOH . 
FA 6 HOH B 46 1446 1519 HOH HOH . 
FA 6 HOH B 47 1447 1559 HOH HOH . 
FA 6 HOH B 48 1448 1505 HOH HOH . 
FA 6 HOH B 49 1449 1535 HOH HOH . 
FA 6 HOH B 50 1450 1517 HOH HOH . 
FA 6 HOH B 51 1451 1528 HOH HOH . 
FA 6 HOH B 52 1452 1548 HOH HOH . 
FA 6 HOH B 53 1453 1567 HOH HOH . 
FA 6 HOH B 54 1454 1521 HOH HOH . 
FA 6 HOH B 55 1455 1511 HOH HOH . 
FA 6 HOH B 56 1456 1547 HOH HOH . 
FA 6 HOH B 57 1457 1531 HOH HOH . 
FA 6 HOH B 58 1458 1565 HOH HOH . 
FA 6 HOH B 59 1459 1522 HOH HOH . 
FA 6 HOH B 60 1460 1553 HOH HOH . 
FA 6 HOH B 61 1461 1566 HOH HOH . 
FA 6 HOH B 62 1462 1554 HOH HOH . 
FA 6 HOH B 63 1463 1510 HOH HOH . 
FA 6 HOH B 64 1464 1561 HOH HOH . 
FA 6 HOH B 65 1465 1507 HOH HOH . 
FA 6 HOH B 66 1466 1564 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . CA 5 -39.575 35.552 80.022 1 92.33 0 C1 EDO 1315 B 1 
HETATM 2 O O1 EDO . . . CA 5 -38.796 35.979 78.922 1 91.78 0 O1 EDO 1315 B 1 
HETATM 3 C C2 EDO . . . CA 5 -38.81 35.452 81.295 1 94.37 0 C2 EDO 1315 B 1 
HETATM 4 O O2 EDO . . . CA 5 -37.416 35.269 81.118 1 91.52 0 O2 EDO 1315 B 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#