data_8SZQ # _model_server_result.job_id tAAS3tFouJCu28jsFl5xug _model_server_result.datetime_utc '2025-03-11 10:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8szq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 8SZQ # _exptl.entry_id 8SZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SZQ _cell.length_a 86.01 _cell.length_b 86.01 _cell.length_c 348.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 270 A THR 419 1_555 C MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc2 A OE2 GLU 364 A GLU 513 1_555 C MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 B O3B ADP . A ADP 1301 1_555 C MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc4 C MG MG . A MG 1302 1_555 Q O HOH . A HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc5 C MG MG . A MG 1302 1_555 Q O HOH . A HOH 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 C MG MG . A MG 1302 1_555 Q O HOH . A HOH 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8SZQ _atom_sites.fract_transf_matrix[1][1] 0.011627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1301 1301 ADP ADP . C 3 MG A 1 1302 1311 MG MG . D 4 SO4 A 1 1303 1401 SO4 SO4 . E 4 SO4 A 1 1304 1402 SO4 SO4 . F 4 SO4 A 1 1305 1403 SO4 SO4 . G 4 SO4 A 1 1306 1404 SO4 SO4 . H 4 SO4 A 1 1307 1405 SO4 SO4 . I 4 SO4 A 1 1308 1406 SO4 SO4 . J 4 SO4 A 1 1309 1407 SO4 SO4 . K 4 SO4 A 1 1310 1408 SO4 SO4 . L 5 EDO A 1 1311 1451 EDO EDO . M 5 EDO A 1 1312 1452 EDO EDO . N 5 EDO A 1 1313 1453 EDO EDO . O 5 EDO A 1 1314 1454 EDO EDO . P 5 EDO A 1 1315 1455 EDO EDO . Q 6 HOH A 1 1401 1503 HOH HOH . Q 6 HOH A 2 1402 1552 HOH HOH . Q 6 HOH A 3 1403 1559 HOH HOH . Q 6 HOH A 4 1404 1545 HOH HOH . Q 6 HOH A 5 1405 1514 HOH HOH . Q 6 HOH A 6 1406 1549 HOH HOH . Q 6 HOH A 7 1407 1543 HOH HOH . Q 6 HOH A 8 1408 1579 HOH HOH . Q 6 HOH A 9 1409 1501 HOH HOH . Q 6 HOH A 10 1410 1502 HOH HOH . Q 6 HOH A 11 1411 1569 HOH HOH . Q 6 HOH A 12 1412 1537 HOH HOH . Q 6 HOH A 13 1413 1573 HOH HOH . Q 6 HOH A 14 1414 1520 HOH HOH . Q 6 HOH A 15 1415 1522 HOH HOH . Q 6 HOH A 16 1416 1525 HOH HOH . Q 6 HOH A 17 1417 1566 HOH HOH . Q 6 HOH A 18 1418 1531 HOH HOH . Q 6 HOH A 19 1419 1565 HOH HOH . Q 6 HOH A 20 1420 1585 HOH HOH . Q 6 HOH A 21 1421 1509 HOH HOH . Q 6 HOH A 22 1422 1515 HOH HOH . Q 6 HOH A 23 1423 1506 HOH HOH . Q 6 HOH A 24 1424 1539 HOH HOH . Q 6 HOH A 25 1425 1572 HOH HOH . Q 6 HOH A 26 1426 1548 HOH HOH . Q 6 HOH A 27 1427 1564 HOH HOH . Q 6 HOH A 28 1428 1508 HOH HOH . Q 6 HOH A 29 1429 1504 HOH HOH . Q 6 HOH A 30 1430 1582 HOH HOH . Q 6 HOH A 31 1431 1521 HOH HOH . Q 6 HOH A 32 1432 1534 HOH HOH . Q 6 HOH A 33 1433 1507 HOH HOH . Q 6 HOH A 34 1434 1562 HOH HOH . Q 6 HOH A 35 1435 1589 HOH HOH . Q 6 HOH A 36 1436 1544 HOH HOH . Q 6 HOH A 37 1437 1586 HOH HOH . Q 6 HOH A 38 1438 1516 HOH HOH . Q 6 HOH A 39 1439 1529 HOH HOH . Q 6 HOH A 40 1440 1554 HOH HOH . Q 6 HOH A 41 1441 1558 HOH HOH . Q 6 HOH A 42 1442 1567 HOH HOH . Q 6 HOH A 43 1443 1570 HOH HOH . Q 6 HOH A 44 1444 1587 HOH HOH . Q 6 HOH A 45 1445 1563 HOH HOH . Q 6 HOH A 46 1446 1536 HOH HOH . Q 6 HOH A 47 1447 1553 HOH HOH . Q 6 HOH A 48 1448 1528 HOH HOH . Q 6 HOH A 49 1449 1530 HOH HOH . Q 6 HOH A 50 1450 1568 HOH HOH . Q 6 HOH A 51 1451 1517 HOH HOH . Q 6 HOH A 52 1452 1584 HOH HOH . Q 6 HOH A 53 1453 1527 HOH HOH . Q 6 HOH A 54 1454 1512 HOH HOH . Q 6 HOH A 55 1455 1571 HOH HOH . Q 6 HOH A 56 1456 1583 HOH HOH . Q 6 HOH A 57 1457 1518 HOH HOH . Q 6 HOH A 58 1458 1556 HOH HOH . Q 6 HOH A 59 1459 1577 HOH HOH . Q 6 HOH A 60 1460 1519 HOH HOH . Q 6 HOH A 61 1461 1591 HOH HOH . Q 6 HOH A 62 1462 1592 HOH HOH . Q 6 HOH A 63 1463 1574 HOH HOH . Q 6 HOH A 64 1464 1575 HOH HOH . Q 6 HOH A 65 1465 1533 HOH HOH . Q 6 HOH A 66 1466 1580 HOH HOH . Q 6 HOH A 67 1467 1594 HOH HOH . Q 6 HOH A 68 1468 1546 HOH HOH . Q 6 HOH A 69 1469 1510 HOH HOH . Q 6 HOH A 70 1470 1555 HOH HOH . Q 6 HOH A 71 1471 1551 HOH HOH . Q 6 HOH A 72 1472 1542 HOH HOH . Q 6 HOH A 73 1473 1550 HOH HOH . Q 6 HOH A 74 1474 1532 HOH HOH . Q 6 HOH A 75 1475 1593 HOH HOH . Q 6 HOH A 76 1476 1581 HOH HOH . Q 6 HOH A 77 1477 1524 HOH HOH . Q 6 HOH A 78 1478 1541 HOH HOH . Q 6 HOH A 79 1479 1511 HOH HOH . Q 6 HOH A 80 1480 1523 HOH HOH . Q 6 HOH A 81 1481 1557 HOH HOH . Q 6 HOH A 82 1482 1513 HOH HOH . Q 6 HOH A 83 1483 1540 HOH HOH . Q 6 HOH A 84 1484 1538 HOH HOH . Q 6 HOH A 85 1485 1561 HOH HOH . Q 6 HOH A 86 1486 1578 HOH HOH . Q 6 HOH A 87 1487 1535 HOH HOH . Q 6 HOH A 88 1488 1547 HOH HOH . Q 6 HOH A 89 1489 1576 HOH HOH . Q 6 HOH A 90 1490 1505 HOH HOH . Q 6 HOH A 91 1491 1588 HOH HOH . Q 6 HOH A 92 1492 1560 HOH HOH . Q 6 HOH A 93 1493 1526 HOH HOH . Q 6 HOH A 94 1494 1590 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 34.923 -3.647 -67.003 1 53.09 0 PB ADP 1301 A 1 HETATM 2 O O1B ADP . . . B 2 35.845 -3.092 -68.056 1 51.42 0 O1B ADP 1301 A 1 HETATM 3 O O2B ADP . . . B 2 34.754 -5.142 -67.114 1 52.63 0 O2B ADP 1301 A 1 HETATM 4 O O3B ADP . . . B 2 33.599 -2.915 -66.95 1 55.74 0 O3B ADP 1301 A 1 HETATM 5 P PA ADP . . . B 2 35.203 -2.691 -64.216 1 54.82 0 PA ADP 1301 A 1 HETATM 6 O O1A ADP . . . B 2 35.384 -1.214 -64.348 1 53.18 0 O1A ADP 1301 A 1 HETATM 7 O O2A ADP . . . B 2 33.845 -3.192 -63.856 1 57.19 0 O2A ADP 1301 A 1 HETATM 8 O O3A ADP . . . B 2 35.654 -3.4 -65.582 1 53.5 0 O3A ADP 1301 A 1 HETATM 9 O O5' ADP . . . B 2 36.272 -3.277 -63.168 1 59.37 0 O5' ADP 1301 A 1 HETATM 10 C C5' ADP . . . B 2 37.645 -2.807 -63.196 1 63.4 0 C5' ADP 1301 A 1 HETATM 11 C C4' ADP . . . B 2 38.389 -3.312 -61.982 1 66.59 0 C4' ADP 1301 A 1 HETATM 12 O O4' ADP . . . B 2 37.748 -2.814 -60.776 1 67.28 0 O4' ADP 1301 A 1 HETATM 13 C C3' ADP . . . B 2 38.457 -4.839 -61.82 1 68.99 0 C3' ADP 1301 A 1 HETATM 14 O O3' ADP . . . B 2 39.746 -5.26 -61.392 1 71.05 0 O3' ADP 1301 A 1 HETATM 15 C C2' ADP . . . B 2 37.414 -5.118 -60.736 1 70.01 0 C2' ADP 1301 A 1 HETATM 16 O O2' ADP . . . B 2 37.679 -6.308 -60.025 1 71.07 0 O2' ADP 1301 A 1 HETATM 17 C C1' ADP . . . B 2 37.577 -3.876 -59.868 1 69.17 0 C1' ADP 1301 A 1 HETATM 18 N N9 ADP . . . B 2 36.426 -3.599 -59.016 1 69.59 0 N9 ADP 1301 A 1 HETATM 19 C C8 ADP . . . B 2 35.216 -3.081 -59.406 1 69.65 0 C8 ADP 1301 A 1 HETATM 20 N N7 ADP . . . B 2 34.362 -2.956 -58.422 1 68.5 0 N7 ADP 1301 A 1 HETATM 21 C C5 ADP . . . B 2 35.046 -3.425 -57.31 1 69.7 0 C5 ADP 1301 A 1 HETATM 22 C C6 ADP . . . B 2 34.682 -3.551 -55.954 1 68.81 0 C6 ADP 1301 A 1 HETATM 23 N N6 ADP . . . B 2 33.492 -3.202 -55.474 1 66.78 0 N6 ADP 1301 A 1 HETATM 24 N N1 ADP . . . B 2 35.606 -4.058 -55.102 1 70.74 0 N1 ADP 1301 A 1 HETATM 25 C C2 ADP . . . B 2 36.803 -4.41 -55.591 1 71.17 0 C2 ADP 1301 A 1 HETATM 26 N N3 ADP . . . B 2 37.255 -4.335 -56.84 1 71.93 0 N3 ADP 1301 A 1 HETATM 27 C C4 ADP . . . B 2 36.321 -3.829 -57.664 1 70.42 0 C4 ADP 1301 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #