data_8SZZ # _model_server_result.job_id 5RgnpM7dDnRvnGmYKQvcrw _model_server_result.datetime_utc '2025-09-12 00:07:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8szz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MB","auth_seq_id":301}' # _entry.id 8SZZ # _exptl.entry_id 8SZZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 WA N N ? 3 XA N N ? 3 YA N N ? 3 ZA N N ? 3 AB N N ? 3 BB N N ? 3 CB N N ? 3 DB N N ? 3 EB N N ? 3 FB N N ? 3 GB N N ? 3 HB N N ? 3 IB N N ? 3 JB N N ? 3 KB N N ? 3 LB N N ? 3 MB N N ? 3 NB N N ? 3 OB N N ? 3 PB N N ? 3 QB N N ? 3 RB N N ? 3 SB N N ? 3 TB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 165 I CYS 163 1_555 E SG CYS 203 I CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 F SG CYS 165 J CYS 163 1_555 F SG CYS 203 J CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 G SG CYS 165 K CYS 163 1_555 G SG CYS 203 K CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 H SG CYS 165 L CYS 163 1_555 H SG CYS 203 L CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 I SG CYS 165 M CYS 163 1_555 I SG CYS 203 M CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 J SG CYS 165 N CYS 163 1_555 J SG CYS 203 N CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 K SG CYS 165 O CYS 163 1_555 K SG CYS 203 O CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 Q SG CYS 165 U CYS 163 1_555 Q SG CYS 203 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf9 U SG CYS 165 Y CYS 163 1_555 U SG CYS 203 Y CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 V SG CYS 165 Z CYS 163 1_555 V SG CYS 203 Z CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 W SG CYS 165 a CYS 163 1_555 W SG CYS 203 a CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 X SG CYS 165 b CYS 163 1_555 X SG CYS 203 b CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 Y SG CYS 165 c CYS 163 1_555 Y SG CYS 203 c CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf14 Z SG CYS 165 d CYS 163 1_555 Z SG CYS 203 d CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 AA SG CYS 165 e CYS 163 1_555 AA SG CYS 203 e CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 BA SG CYS 165 f CYS 163 1_555 BA SG CYS 203 f CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf17 CA SG CYS 165 g CYS 163 1_555 CA SG CYS 203 g CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf18 DA SG CYS 165 h CYS 163 1_555 DA SG CYS 203 h CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf19 EA SG CYS 165 i CYS 163 1_555 EA SG CYS 203 i CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf20 FA SG CYS 165 j CYS 163 1_555 FA SG CYS 203 j CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf21 GA SG CYS 165 k CYS 163 1_555 GA SG CYS 203 k CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf22 HA SG CYS 165 l CYS 163 1_555 HA SG CYS 203 l CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf23 IA SG CYS 165 m CYS 163 1_555 IA SG CYS 203 m CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 JA SG CYS 165 n CYS 163 1_555 JA SG CYS 203 n CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 E OE2 GLU 73 I GLU 71 1_555 WA NA NA . I NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc2 J OE2 GLU 73 N GLU 71 1_555 BB NA NA . N NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc3 X OE2 GLU 73 b GLU 71 1_555 HB NA NA . b NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8SZZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 3 NA I 1 301 1 NA NA . XA 3 NA J 1 301 2 NA NA . YA 3 NA K 1 301 3 NA NA . ZA 3 NA L 1 301 4 NA NA . AB 3 NA M 1 301 5 NA NA . BB 3 NA N 1 301 6 NA NA . CB 3 NA O 1 301 7 NA NA . DB 3 NA U 1 301 8 NA NA . EB 3 NA Y 1 301 9 NA NA . FB 3 NA Z 1 301 10 NA NA . GB 3 NA a 1 301 11 NA NA . HB 3 NA b 1 301 12 NA NA . IB 3 NA c 1 301 13 NA NA . JB 3 NA d 1 301 14 NA NA . KB 3 NA e 1 301 15 NA NA . LB 3 NA f 1 301 16 NA NA . MB 3 NA g 1 301 17 NA NA . NB 3 NA h 1 301 18 NA NA . OB 3 NA i 1 301 19 NA NA . PB 3 NA j 1 301 20 NA NA . QB 3 NA k 1 301 21 NA NA . RB 3 NA l 1 301 22 NA NA . SB 3 NA m 1 301 23 NA NA . TB 3 NA n 1 301 24 NA NA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id MB _atom_site.label_entity_id 3 _atom_site.Cartn_x 212.65 _atom_site.Cartn_y 127.848 _atom_site.Cartn_z 194.563 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id g _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #