data_8T04 # _model_server_result.job_id d5YlX0eBKpZx28c9OxgwHA _model_server_result.datetime_utc '2024-10-15 11:24:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":303}' # _entry.id 8T04 # _exptl.entry_id 8T04 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T04 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 50 B CYS 50 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 E SG CYS 22 E CYS 22 1_555 E SG CYS 97 E CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 48 A HIS 48 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A NE2 HIS 180 A HIS 180 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 A NE2 HIS 184 A HIS 184 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 B NE2 HIS 48 B HIS 48 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 B NE2 HIS 180 B HIS 180 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 B NE2 HIS 184 B HIS 184 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 248 n n O3 P1 LBN sing 249 n n O2 C9 LBN sing 250 n n O2 P1 LBN sing 251 n n C9 C6 LBN sing 252 n n O4 P1 LBN doub 253 n n P1 O1 LBN sing 254 n n C6 N1 LBN sing 255 n n N1 C15 LBN sing 256 n n N1 C18 LBN sing 257 n n O1 C1 LBN sing 258 n n C2 C1 LBN sing 259 n n C2 C3 LBN sing 260 n n C2 O7 LBN sing 261 n n C3 O5 LBN sing 262 n n O6 C25 LBN doub 263 n n O5 C25 LBN sing 264 n n O7 C34 LBN sing 265 n n C25 C26 LBN sing 266 n n C34 C35 LBN sing 267 n n C34 O8 LBN doub 268 n n C26 C27 LBN sing 269 n n C35 C36 LBN sing 270 n n C27 C28 LBN sing 271 n n C36 C37 LBN sing 272 n n C28 C29 LBN sing 273 n n C37 C38 LBN sing 274 n n C29 C30 LBN sing 275 n n C39 C38 LBN sing 276 n n C39 C40 LBN sing 277 n n C41 C40 LBN sing 278 n n C41 C42 LBN sing 279 n n C30 C31 LBN sing 280 n n C42 C5 LBN doub 281 z n C31 C32 LBN sing 282 n n C5 C8 LBN sing 283 n n C8 C11 LBN sing 284 n n C32 C33 LBN sing 285 n n C11 C14 LBN sing 286 n n C33 C4 LBN sing 287 n n C14 C17 LBN sing 288 n n C4 C7 LBN sing 289 n n C17 C20 LBN sing 290 n n C7 C10 LBN sing 291 n n C20 C22 LBN sing 292 n n C10 C13 LBN sing 293 n n C22 C23 LBN sing 294 n n C13 C16 LBN sing 295 n n C23 C24 LBN sing 296 n n C16 C19 LBN sing 297 n n C19 C21 LBN sing 298 n n C1 H1 LBN sing 299 n n C1 H2 LBN sing 300 n n C2 H3 LBN sing 301 n n C3 H4 LBN sing 302 n n C3 H5 LBN sing 303 n n C4 H6 LBN sing 304 n n C4 H7 LBN sing 305 n n C5 H8 LBN sing 306 n n C6 H9 LBN sing 307 n n C6 H10 LBN sing 308 n n C7 H11 LBN sing 309 n n C7 H12 LBN sing 310 n n C8 H13 LBN sing 311 n n C8 H14 LBN sing 312 n n C9 H15 LBN sing 313 n n C9 H16 LBN sing 314 n n C10 H17 LBN sing 315 n n C10 H18 LBN sing 316 n n C11 H19 LBN sing 317 n n C12 H20 LBN sing 318 n n C12 H21 LBN sing 319 n n C12 H22 LBN sing 320 n n C13 H23 LBN sing 321 n n C13 H24 LBN sing 322 n n C14 H25 LBN sing 323 n n C15 H26 LBN sing 324 n n C15 H27 LBN sing 325 n n C15 H28 LBN sing 326 n n C16 H30 LBN sing 327 n n C16 H31 LBN sing 328 n n C17 H32 LBN sing 329 n n C17 H33 LBN sing 330 n n C18 H34 LBN sing 331 n n C18 H35 LBN sing 332 n n C18 H36 LBN sing 333 n n C19 H37 LBN sing 334 n n C19 H38 LBN sing 335 n n C20 H39 LBN sing 336 n n C20 H40 LBN sing 337 n n C21 H41 LBN sing 338 n n C21 H42 LBN sing 339 n n C21 H43 LBN sing 340 n n C22 H44 LBN sing 341 n n C22 H45 LBN sing 342 n n C23 H46 LBN sing 343 n n C23 H47 LBN sing 344 n n C24 H48 LBN sing 345 n n C24 H49 LBN sing 346 n n C24 H50 LBN sing 347 n n C26 H51 LBN sing 348 n n C26 H52 LBN sing 349 n n C27 H53 LBN sing 350 n n C27 H54 LBN sing 351 n n C28 H55 LBN sing 352 n n C28 H56 LBN sing 353 n n C29 H57 LBN sing 354 n n C29 H58 LBN sing 355 n n C30 H59 LBN sing 356 n n C30 H60 LBN sing 357 n n C31 H61 LBN sing 358 n n C31 H62 LBN sing 359 n n C32 H63 LBN sing 360 n n C32 H64 LBN sing 361 n n C33 H65 LBN sing 362 n n C33 H66 LBN sing 363 n n C35 H67 LBN sing 364 n n C35 H68 LBN sing 365 n n C36 H69 LBN sing 366 n n C36 H70 LBN sing 367 n n C37 H71 LBN sing 368 n n C37 H72 LBN sing 369 n n C38 H73 LBN sing 370 n n C38 H74 LBN sing 371 n n C39 H75 LBN sing 372 n n C40 H76 LBN sing 373 n n C41 H77 LBN sing 374 n n C41 H78 LBN sing 375 n n C42 H79 LBN sing 376 n n C11 H80 LBN sing 377 n n C14 H81 LBN sing 378 n n C39 H82 LBN sing 379 n n C40 H83 LBN sing 380 n n # _atom_sites.entry_id 8T04 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN A 1 301 301 ZN ZN . H 5 CLR A 1 302 401 CLR CLR . I 6 LBN A 1 303 501 LBN LBN . J 4 ZN B 1 301 301 ZN ZN . K 5 CLR B 1 302 401 CLR CLR . L 6 LBN B 1 303 501 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . I 6 119.339 104.976 149.815 1 142.25 ? C1 LBN 303 A 1 HETATM 2 N N1 LBN . . . I 6 120.016 106.891 155.509 1 143.32 ? N1 LBN 303 A 1 HETATM 3 P P1 LBN . . . I 6 118.29 107.289 150.599 1 141.12 ? P1 LBN 303 A 1 HETATM 4 C C2 LBN . . . I 6 118.782 103.699 149.188 1 142.45 ? C2 LBN 303 A 1 HETATM 5 C C3 LBN . . . I 6 118.955 102.533 150.171 1 142.68 ? C3 LBN 303 A 1 HETATM 6 C C4 LBN . . . I 6 120.761 102.142 139.872 1 145.19 ? C4 LBN 303 A 1 HETATM 7 C C5 LBN . . . I 6 116.383 101.466 138.171 1 149.12 ? C5 LBN 303 A 1 HETATM 8 C C6 LBN . . . I 6 118.941 106.99 154.492 1 142.61 ? C6 LBN 303 A 1 HETATM 9 O O1 LBN . . . I 6 118.451 106.031 149.524 1 142.02 ? O1 LBN 303 A 1 HETATM 10 C C7 LBN . . . I 6 121.224 103.626 139.786 1 144.69 ? C7 LBN 303 A 1 HETATM 11 C C8 LBN . . . I 6 116.944 101.501 136.724 1 149.08 ? C8 LBN 303 A 1 HETATM 12 C C9 LBN . . . I 6 119.434 107.173 153.024 1 141.79 ? C9 LBN 303 A 1 HETATM 13 O O2 LBN . . . I 6 118.395 106.727 152.166 1 141.39 ? O2 LBN 303 A 1 HETATM 14 C C10 LBN . . . I 6 122.69 103.754 140.244 1 144.2 ? C10 LBN 303 A 1 HETATM 15 C C11 LBN . . . I 6 115.932 100.827 135.77 1 148.78 ? C11 LBN 303 A 1 HETATM 16 C C12 LBN . . . I 6 119.394 107.029 156.814 1 143.33 ? C12 LBN 303 A 1 HETATM 17 O O3 LBN . . . I 6 119.336 108.34 150.309 1 141.82 ? O3 LBN 303 A 1 HETATM 18 C C13 LBN . . . I 6 123.136 105.223 140.091 1 143.81 ? C13 LBN 303 A 1 HETATM 19 C C14 LBN . . . I 6 114.543 101.508 135.88 1 148.23 ? C14 LBN 303 A 1 HETATM 20 C C15 LBN . . . I 6 121.044 107.89 155.297 1 143.54 ? C15 LBN 303 A 1 HETATM 21 O O4 LBN . . . I 6 116.924 107.882 150.404 1 141.47 ? O4 LBN 303 A 1 HETATM 22 C C16 LBN . . . I 6 124.675 105.252 140.053 1 143.57 ? C16 LBN 303 A 1 HETATM 23 C C18 LBN . . . I 6 120.64 105.57 155.486 1 143.41 ? C18 LBN 303 A 1 HETATM 24 C C19 LBN . . . I 6 125.227 106.681 140.206 1 143.3 ? C19 LBN 303 A 1 HETATM 25 C C21 LBN . . . I 6 124.662 107.68 139.187 1 143.17 ? C21 LBN 303 A 1 HETATM 26 C C25 LBN . . . I 6 119.245 100.156 149.817 1 142.99 ? C25 LBN 303 A 1 HETATM 27 O O5 LBN . . . I 6 118.467 101.334 149.579 1 143.1 ? O5 LBN 303 A 1 HETATM 28 C C26 LBN . . . I 6 119.782 99.307 148.623 1 143.02 ? C26 LBN 303 A 1 HETATM 29 O O6 LBN . . . I 6 119.483 99.815 150.923 1 142.59 ? O6 LBN 303 A 1 HETATM 30 C C27 LBN . . . I 6 119.332 99.922 147.274 1 143.04 ? C27 LBN 303 A 1 HETATM 31 C C28 LBN . . . I 6 119.824 99.023 146.104 1 143.38 ? C28 LBN 303 A 1 HETATM 32 C C29 LBN . . . I 6 119.915 99.835 144.78 1 144.03 ? C29 LBN 303 A 1 HETATM 33 C C30 LBN . . . I 6 119.085 99.161 143.644 1 144.53 ? C30 LBN 303 A 1 HETATM 34 C C31 LBN . . . I 6 118.706 100.2 142.545 1 144.88 ? C31 LBN 303 A 1 HETATM 35 C C32 LBN . . . I 6 119.919 100.464 141.603 1 145.09 ? C32 LBN 303 A 1 HETATM 36 C C33 LBN . . . I 6 119.928 101.963 141.18 1 145.34 ? C33 LBN 303 A 1 HETATM 37 C C34 LBN . . . I 6 119.034 104.102 146.839 1 143.52 ? C34 LBN 303 A 1 HETATM 38 O O7 LBN . . . I 6 119.49 103.434 148.01 1 142.74 ? O7 LBN 303 A 1 HETATM 39 C C35 LBN . . . I 6 118.297 103.272 145.75 1 144.17 ? C35 LBN 303 A 1 HETATM 40 O O8 LBN . . . I 6 119.232 105.264 146.69 1 143.69 ? O8 LBN 303 A 1 HETATM 41 C C36 LBN . . . I 6 116.937 103.901 145.337 1 144.79 ? C36 LBN 303 A 1 HETATM 42 C C37 LBN . . . I 6 116.818 103.911 143.793 1 145.48 ? C37 LBN 303 A 1 HETATM 43 C C38 LBN . . . I 6 115.527 104.652 143.356 1 146.7 ? C38 LBN 303 A 1 HETATM 44 C C39 LBN . . . I 6 114.879 103.947 142.138 1 147.41 ? C39 LBN 303 A 1 HETATM 45 C C40 LBN . . . I 6 115.835 103.897 140.919 1 148.1 ? C40 LBN 303 A 1 HETATM 46 C C41 LBN . . . I 6 116.028 102.449 140.434 1 148.45 ? C41 LBN 303 A 1 HETATM 47 C C42 LBN . . . I 6 116.603 102.488 139.001 1 148.78 ? C42 LBN 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #