data_8T04
#
_model_server_result.job_id            clFr1fAOC1udX6tZ4s28_A 
_model_server_result.datetime_utc      '2024-10-15 11:30:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t04 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":303}' 
#
_entry.id    8T04 
#
_exptl.entry_id    8T04 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T04 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T04 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 50 B CYS 50 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 E SG CYS 22 E CYS 22 1_555 E SG CYS 97 E CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A NE2 HIS 48 A HIS 48 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc2 A NE2 HIS 180 A HIS 180 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc3 A NE2 HIS 184 A HIS 184 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc4 B NE2 HIS 48 B HIS 48 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc5 B NE2 HIS 180 B HIS 180 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc6 B NE2 HIS 184 B HIS 184 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 248 n n 
O3 P1 LBN sing 249 n n 
O2 C9 LBN sing 250 n n 
O2 P1 LBN sing 251 n n 
C9 C6 LBN sing 252 n n 
O4 P1 LBN doub 253 n n 
P1 O1 LBN sing 254 n n 
C6 N1 LBN sing 255 n n 
N1 C15 LBN sing 256 n n 
N1 C18 LBN sing 257 n n 
O1 C1 LBN sing 258 n n 
C2 C1 LBN sing 259 n n 
C2 C3 LBN sing 260 n n 
C2 O7 LBN sing 261 n n 
C3 O5 LBN sing 262 n n 
O6 C25 LBN doub 263 n n 
O5 C25 LBN sing 264 n n 
O7 C34 LBN sing 265 n n 
C25 C26 LBN sing 266 n n 
C34 C35 LBN sing 267 n n 
C34 O8 LBN doub 268 n n 
C26 C27 LBN sing 269 n n 
C35 C36 LBN sing 270 n n 
C27 C28 LBN sing 271 n n 
C36 C37 LBN sing 272 n n 
C28 C29 LBN sing 273 n n 
C37 C38 LBN sing 274 n n 
C29 C30 LBN sing 275 n n 
C39 C38 LBN sing 276 n n 
C39 C40 LBN sing 277 n n 
C41 C40 LBN sing 278 n n 
C41 C42 LBN sing 279 n n 
C30 C31 LBN sing 280 n n 
C42 C5 LBN doub 281 z n 
C31 C32 LBN sing 282 n n 
C5 C8 LBN sing 283 n n 
C8 C11 LBN sing 284 n n 
C32 C33 LBN sing 285 n n 
C11 C14 LBN sing 286 n n 
C33 C4 LBN sing 287 n n 
C14 C17 LBN sing 288 n n 
C4 C7 LBN sing 289 n n 
C17 C20 LBN sing 290 n n 
C7 C10 LBN sing 291 n n 
C20 C22 LBN sing 292 n n 
C10 C13 LBN sing 293 n n 
C22 C23 LBN sing 294 n n 
C13 C16 LBN sing 295 n n 
C23 C24 LBN sing 296 n n 
C16 C19 LBN sing 297 n n 
C19 C21 LBN sing 298 n n 
C1 H1 LBN sing 299 n n 
C1 H2 LBN sing 300 n n 
C2 H3 LBN sing 301 n n 
C3 H4 LBN sing 302 n n 
C3 H5 LBN sing 303 n n 
C4 H6 LBN sing 304 n n 
C4 H7 LBN sing 305 n n 
C5 H8 LBN sing 306 n n 
C6 H9 LBN sing 307 n n 
C6 H10 LBN sing 308 n n 
C7 H11 LBN sing 309 n n 
C7 H12 LBN sing 310 n n 
C8 H13 LBN sing 311 n n 
C8 H14 LBN sing 312 n n 
C9 H15 LBN sing 313 n n 
C9 H16 LBN sing 314 n n 
C10 H17 LBN sing 315 n n 
C10 H18 LBN sing 316 n n 
C11 H19 LBN sing 317 n n 
C12 H20 LBN sing 318 n n 
C12 H21 LBN sing 319 n n 
C12 H22 LBN sing 320 n n 
C13 H23 LBN sing 321 n n 
C13 H24 LBN sing 322 n n 
C14 H25 LBN sing 323 n n 
C15 H26 LBN sing 324 n n 
C15 H27 LBN sing 325 n n 
C15 H28 LBN sing 326 n n 
C16 H30 LBN sing 327 n n 
C16 H31 LBN sing 328 n n 
C17 H32 LBN sing 329 n n 
C17 H33 LBN sing 330 n n 
C18 H34 LBN sing 331 n n 
C18 H35 LBN sing 332 n n 
C18 H36 LBN sing 333 n n 
C19 H37 LBN sing 334 n n 
C19 H38 LBN sing 335 n n 
C20 H39 LBN sing 336 n n 
C20 H40 LBN sing 337 n n 
C21 H41 LBN sing 338 n n 
C21 H42 LBN sing 339 n n 
C21 H43 LBN sing 340 n n 
C22 H44 LBN sing 341 n n 
C22 H45 LBN sing 342 n n 
C23 H46 LBN sing 343 n n 
C23 H47 LBN sing 344 n n 
C24 H48 LBN sing 345 n n 
C24 H49 LBN sing 346 n n 
C24 H50 LBN sing 347 n n 
C26 H51 LBN sing 348 n n 
C26 H52 LBN sing 349 n n 
C27 H53 LBN sing 350 n n 
C27 H54 LBN sing 351 n n 
C28 H55 LBN sing 352 n n 
C28 H56 LBN sing 353 n n 
C29 H57 LBN sing 354 n n 
C29 H58 LBN sing 355 n n 
C30 H59 LBN sing 356 n n 
C30 H60 LBN sing 357 n n 
C31 H61 LBN sing 358 n n 
C31 H62 LBN sing 359 n n 
C32 H63 LBN sing 360 n n 
C32 H64 LBN sing 361 n n 
C33 H65 LBN sing 362 n n 
C33 H66 LBN sing 363 n n 
C35 H67 LBN sing 364 n n 
C35 H68 LBN sing 365 n n 
C36 H69 LBN sing 366 n n 
C36 H70 LBN sing 367 n n 
C37 H71 LBN sing 368 n n 
C37 H72 LBN sing 369 n n 
C38 H73 LBN sing 370 n n 
C38 H74 LBN sing 371 n n 
C39 H75 LBN sing 372 n n 
C40 H76 LBN sing 373 n n 
C41 H77 LBN sing 374 n n 
C41 H78 LBN sing 375 n n 
C42 H79 LBN sing 376 n n 
C11 H80 LBN sing 377 n n 
C14 H81 LBN sing 378 n n 
C39 H82 LBN sing 379 n n 
C40 H83 LBN sing 380 n n 
#
_atom_sites.entry_id                     8T04 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ZN A 1 301 301 ZN ZN . 
H 5 CLR A 1 302 401 CLR CLR . 
I 6 LBN A 1 303 501 LBN LBN . 
J 4 ZN B 1 301 301 ZN ZN . 
K 5 CLR B 1 302 401 CLR CLR . 
L 6 LBN B 1 303 501 LBN LBN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . L 6 129.661 144.018 149.824 1 91.48 ? C1 LBN 303 B 1 
HETATM 2 N N1 LBN . . . L 6 128.971 142.11 155.513 1 89.96 ? N1 LBN 303 B 1 
HETATM 3 P P1 LBN . . . L 6 130.702 141.694 150.601 1 92.29 ? P1 LBN 303 B 1 
HETATM 4 C C2 LBN . . . L 6 130.22 145.295 149.199 1 91.03 ? C2 LBN 303 B 1 
HETATM 5 C C3 LBN . . . L 6 130.048 146.461 150.184 1 91.23 ? C3 LBN 303 B 1 
HETATM 6 C C4 LBN . . . L 6 128.236 146.867 139.878 1 89.83 ? C4 LBN 303 B 1 
HETATM 7 C C5 LBN . . . L 6 132.619 147.537 138.183 1 90.69 ? C5 LBN 303 B 1 
HETATM 8 C C6 LBN . . . L 6 130.044 142.008 154.495 1 90.09 ? C6 LBN 303 B 1 
HETATM 9 O O1 LBN . . . L 6 130.543 142.957 149.53 1 92.22 ? O1 LBN 303 B 1 
HETATM 10 C C7 LBN . . . L 6 127.774 145.382 139.791 1 89.75 ? C7 LBN 303 B 1 
HETATM 11 C C8 LBN . . . L 6 132.06 147.503 136.735 1 90.96 ? C8 LBN 303 B 1 
HETATM 12 C C9 LBN . . . L 6 129.551 141.82 153.027 1 90.22 ? C9 LBN 303 B 1 
HETATM 13 O O2 LBN . . . L 6 130.598 142.253 152.171 1 91.33 ? O2 LBN 303 B 1 
HETATM 14 C C10 LBN . . . L 6 126.308 145.253 140.25 1 89.41 ? C10 LBN 303 B 1 
HETATM 15 C C11 LBN . . . L 6 133.077 148.173 135.783 1 91.02 ? C11 LBN 303 B 1 
HETATM 16 C C12 LBN . . . L 6 129.594 141.972 156.818 1 90.03 ? C12 LBN 303 B 1 
HETATM 17 O O3 LBN . . . L 6 129.657 140.642 150.309 1 91.95 ? O3 LBN 303 B 1 
HETATM 18 C C13 LBN . . . L 6 125.863 143.784 140.097 1 89.45 ? C13 LBN 303 B 1 
HETATM 19 C C14 LBN . . . L 6 134.464 147.485 135.892 1 90.87 ? C14 LBN 303 B 1 
HETATM 20 C C15 LBN . . . L 6 127.942 141.112 155.303 1 89.87 ? C15 LBN 303 B 1 
HETATM 21 O O4 LBN . . . L 6 132.069 141.102 150.407 1 91.56 ? O4 LBN 303 B 1 
HETATM 22 C C16 LBN . . . L 6 124.324 143.754 140.057 1 89.44 ? C16 LBN 303 B 1 
HETATM 23 C C18 LBN . . . L 6 128.35 143.433 155.489 1 89.79 ? C18 LBN 303 B 1 
HETATM 24 C C19 LBN . . . L 6 123.771 142.323 140.203 1 89.25 ? C19 LBN 303 B 1 
HETATM 25 C C21 LBN . . . L 6 124.337 141.326 139.182 1 88.71 ? C21 LBN 303 B 1 
HETATM 26 C C25 LBN . . . L 6 129.744 148.84 149.83 1 90.44 ? C25 LBN 303 B 1 
HETATM 27 O O5 LBN . . . L 6 130.53 147.665 149.595 1 91.43 ? O5 LBN 303 B 1 
HETATM 28 C C26 LBN . . . L 6 129.215 149.691 148.634 1 89.69 ? C26 LBN 303 B 1 
HETATM 29 O O6 LBN . . . L 6 129.493 149.175 150.936 1 90.01 ? O6 LBN 303 B 1 
HETATM 30 C C27 LBN . . . L 6 129.669 149.077 147.285 1 89.03 ? C27 LBN 303 B 1 
HETATM 31 C C28 LBN . . . L 6 129.18 149.979 146.115 1 89.05 ? C28 LBN 303 B 1 
HETATM 32 C C29 LBN . . . L 6 129.087 149.168 144.79 1 89.19 ? C29 LBN 303 B 1 
HETATM 33 C C30 LBN . . . L 6 129.917 149.841 143.654 1 89.23 ? C30 LBN 303 B 1 
HETATM 34 C C31 LBN . . . L 6 130.293 148.803 142.552 1 89.27 ? C31 LBN 303 B 1 
HETATM 35 C C32 LBN . . . L 6 129.08 148.543 141.611 1 89.28 ? C32 LBN 303 B 1 
HETATM 36 C C33 LBN . . . L 6 129.068 147.045 141.187 1 89.72 ? C33 LBN 303 B 1 
HETATM 37 C C34 LBN . . . L 6 129.965 144.895 146.848 1 90.39 ? C34 LBN 303 B 1 
HETATM 38 O O7 LBN . . . L 6 129.513 145.562 148.02 1 90.74 ? O7 LBN 303 B 1 
HETATM 39 C C35 LBN . . . L 6 130.698 145.726 145.757 1 90.21 ? C35 LBN 303 B 1 
HETATM 40 O O8 LBN . . . L 6 129.768 143.732 146.698 1 90.53 ? O8 LBN 303 B 1 
HETATM 41 C C36 LBN . . . L 6 132.057 145.099 145.343 1 90.17 ? C36 LBN 303 B 1 
HETATM 42 C C37 LBN . . . L 6 132.176 145.089 143.8 1 89.93 ? C37 LBN 303 B 1 
HETATM 43 C C38 LBN . . . L 6 133.468 144.348 143.366 1 90.23 ? C38 LBN 303 B 1 
HETATM 44 C C39 LBN . . . L 6 134.118 145.051 142.147 1 90.33 ? C39 LBN 303 B 1 
HETATM 45 C C40 LBN . . . L 6 133.161 145.103 140.928 1 90.38 ? C40 LBN 303 B 1 
HETATM 46 C C41 LBN . . . L 6 132.967 146.552 140.447 1 90.37 ? C41 LBN 303 B 1 
HETATM 47 C C42 LBN . . . L 6 132.394 146.516 139.014 1 90.43 ? C42 LBN 303 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#