data_8T05 # _model_server_result.job_id CVQESiAaVIDGjTntMFc5Ew _model_server_result.datetime_utc '2025-02-05 09:45:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 8T05 # _exptl.entry_id 8T05 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T05 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 60 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 50 B CYS 50 1_555 B SG CYS 60 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A OE1 GLN 44 A GLN 44 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A NE2 HIS 48 A HIS 48 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 A NE2 HIS 186 A HIS 186 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 B OE1 GLN 44 B GLN 44 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 B NE2 HIS 48 B HIS 48 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 B NE2 HIS 182 B HIS 182 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 B NE2 HIS 186 B HIS 186 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 248 n n O3 P1 LBN sing 249 n n O2 C9 LBN sing 250 n n O2 P1 LBN sing 251 n n C9 C6 LBN sing 252 n n O4 P1 LBN doub 253 n n P1 O1 LBN sing 254 n n C6 N1 LBN sing 255 n n N1 C15 LBN sing 256 n n N1 C18 LBN sing 257 n n O1 C1 LBN sing 258 n n C2 C1 LBN sing 259 n n C2 C3 LBN sing 260 n n C2 O7 LBN sing 261 n n C3 O5 LBN sing 262 n n O6 C25 LBN doub 263 n n O5 C25 LBN sing 264 n n O7 C34 LBN sing 265 n n C25 C26 LBN sing 266 n n C34 C35 LBN sing 267 n n C34 O8 LBN doub 268 n n C26 C27 LBN sing 269 n n C35 C36 LBN sing 270 n n C27 C28 LBN sing 271 n n C36 C37 LBN sing 272 n n C28 C29 LBN sing 273 n n C37 C38 LBN sing 274 n n C29 C30 LBN sing 275 n n C39 C38 LBN sing 276 n n C39 C40 LBN sing 277 n n C41 C40 LBN sing 278 n n C41 C42 LBN sing 279 n n C30 C31 LBN sing 280 n n C42 C5 LBN doub 281 z n C31 C32 LBN sing 282 n n C5 C8 LBN sing 283 n n C8 C11 LBN sing 284 n n C32 C33 LBN sing 285 n n C11 C14 LBN sing 286 n n C33 C4 LBN sing 287 n n C14 C17 LBN sing 288 n n C4 C7 LBN sing 289 n n C17 C20 LBN sing 290 n n C7 C10 LBN sing 291 n n C20 C22 LBN sing 292 n n C10 C13 LBN sing 293 n n C22 C23 LBN sing 294 n n C13 C16 LBN sing 295 n n C23 C24 LBN sing 296 n n C16 C19 LBN sing 297 n n C19 C21 LBN sing 298 n n C1 H1 LBN sing 299 n n C1 H2 LBN sing 300 n n C2 H3 LBN sing 301 n n C3 H4 LBN sing 302 n n C3 H5 LBN sing 303 n n C4 H6 LBN sing 304 n n C4 H7 LBN sing 305 n n C5 H8 LBN sing 306 n n C6 H9 LBN sing 307 n n C6 H10 LBN sing 308 n n C7 H11 LBN sing 309 n n C7 H12 LBN sing 310 n n C8 H13 LBN sing 311 n n C8 H14 LBN sing 312 n n C9 H15 LBN sing 313 n n C9 H16 LBN sing 314 n n C10 H17 LBN sing 315 n n C10 H18 LBN sing 316 n n C11 H19 LBN sing 317 n n C12 H20 LBN sing 318 n n C12 H21 LBN sing 319 n n C12 H22 LBN sing 320 n n C13 H23 LBN sing 321 n n C13 H24 LBN sing 322 n n C14 H25 LBN sing 323 n n C15 H26 LBN sing 324 n n C15 H27 LBN sing 325 n n C15 H28 LBN sing 326 n n C16 H30 LBN sing 327 n n C16 H31 LBN sing 328 n n C17 H32 LBN sing 329 n n C17 H33 LBN sing 330 n n C18 H34 LBN sing 331 n n C18 H35 LBN sing 332 n n C18 H36 LBN sing 333 n n C19 H37 LBN sing 334 n n C19 H38 LBN sing 335 n n C20 H39 LBN sing 336 n n C20 H40 LBN sing 337 n n C21 H41 LBN sing 338 n n C21 H42 LBN sing 339 n n C21 H43 LBN sing 340 n n C22 H44 LBN sing 341 n n C22 H45 LBN sing 342 n n C23 H46 LBN sing 343 n n C23 H47 LBN sing 344 n n C24 H48 LBN sing 345 n n C24 H49 LBN sing 346 n n C24 H50 LBN sing 347 n n C26 H51 LBN sing 348 n n C26 H52 LBN sing 349 n n C27 H53 LBN sing 350 n n C27 H54 LBN sing 351 n n C28 H55 LBN sing 352 n n C28 H56 LBN sing 353 n n C29 H57 LBN sing 354 n n C29 H58 LBN sing 355 n n C30 H59 LBN sing 356 n n C30 H60 LBN sing 357 n n C31 H61 LBN sing 358 n n C31 H62 LBN sing 359 n n C32 H63 LBN sing 360 n n C32 H64 LBN sing 361 n n C33 H65 LBN sing 362 n n C33 H66 LBN sing 363 n n C35 H67 LBN sing 364 n n C35 H68 LBN sing 365 n n C36 H69 LBN sing 366 n n C36 H70 LBN sing 367 n n C37 H71 LBN sing 368 n n C37 H72 LBN sing 369 n n C38 H73 LBN sing 370 n n C38 H74 LBN sing 371 n n C39 H75 LBN sing 372 n n C40 H76 LBN sing 373 n n C41 H77 LBN sing 374 n n C41 H78 LBN sing 375 n n C42 H79 LBN sing 376 n n C11 H80 LBN sing 377 n n C14 H81 LBN sing 378 n n C39 H82 LBN sing 379 n n C40 H83 LBN sing 380 n n # _atom_sites.entry_id 8T05 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN A 1 301 301 ZN ZN . F 5 CLR A 1 302 401 CLR CLR . G 6 LBN A 1 303 501 LBN LBN . H 4 ZN B 1 301 301 ZN ZN . I 5 CLR B 1 302 401 CLR CLR . J 6 LBN B 1 303 501 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . G 6 115.953 104.226 123.435 1 141.33 ? C1 LBN 303 A 1 HETATM 2 N N1 LBN . . . G 6 116.855 109.267 128.231 1 145.22 ? N1 LBN 303 A 1 HETATM 3 P P1 LBN . . . G 6 115.28 106.729 123.999 1 147.07 ? P1 LBN 303 A 1 HETATM 4 C C2 LBN . . . G 6 117.093 103.34 122.927 1 139.6 ? C2 LBN 303 A 1 HETATM 5 C C3 LBN . . . G 6 118.356 103.504 123.798 1 138.58 ? C3 LBN 303 A 1 HETATM 6 C C4 LBN . . . G 6 125.139 101.248 120.673 1 124.27 ? C4 LBN 303 A 1 HETATM 7 C C6 LBN . . . G 6 116.945 108.06 127.377 1 145.32 ? C6 LBN 303 A 1 HETATM 8 O O1 LBN . . . G 6 116.326 105.587 123.39 1 144.15 ? O1 LBN 303 A 1 HETATM 9 C C7 LBN . . . G 6 126.109 101.543 119.483 1 122.76 ? C7 LBN 303 A 1 HETATM 10 C C9 LBN . . . G 6 116.31 108.197 125.956 1 145.35 ? C9 LBN 303 A 1 HETATM 11 O O2 LBN . . . G 6 115.672 106.98 125.601 1 146.4 ? O2 LBN 303 A 1 HETATM 12 C C10 LBN . . . G 6 127.56 101.102 119.807 1 120.87 ? C10 LBN 303 A 1 HETATM 13 C C12 LBN . . . G 6 117.336 110.444 127.547 1 145.08 ? C12 LBN 303 A 1 HETATM 14 O O3 LBN . . . G 6 113.857 106.228 123.896 1 147.66 ? O3 LBN 303 A 1 HETATM 15 C C13 LBN . . . G 6 128.293 102.132 120.705 1 119.45 ? C13 LBN 303 A 1 HETATM 16 C C15 LBN . . . G 6 117.676 109.052 129.398 1 145.02 ? C15 LBN 303 A 1 HETATM 17 O O4 LBN . . . G 6 115.418 108.01 123.214 1 146.81 ? O4 LBN 303 A 1 HETATM 18 C C16 LBN . . . G 6 128.812 103.324 119.876 1 118.15 ? C16 LBN 303 A 1 HETATM 19 C C18 LBN . . . G 6 115.488 109.494 128.688 1 145.23 ? C18 LBN 303 A 1 HETATM 20 C C19 LBN . . . G 6 130.163 102.977 119.228 1 117.44 ? C19 LBN 303 A 1 HETATM 21 C C21 LBN . . . G 6 130.319 103.858 117.993 1 117.12 ? C21 LBN 303 A 1 HETATM 22 C C25 LBN . . . G 6 118.418 101.303 124.869 1 135.83 ? C25 LBN 303 A 1 HETATM 23 O O5 LBN . . . G 6 118.292 102.725 124.991 1 137.65 ? O5 LBN 303 A 1 HETATM 24 C C26 LBN . . . G 6 119.754 100.651 124.367 1 134.03 ? C26 LBN 303 A 1 HETATM 25 O O6 LBN . . . G 6 117.488 100.641 125.177 1 136.56 ? O6 LBN 303 A 1 HETATM 26 C C27 LBN . . . G 6 119.579 99.181 123.873 1 132.77 ? C27 LBN 303 A 1 HETATM 27 C C28 LBN . . . G 6 119.62 99.081 122.317 1 131.46 ? C28 LBN 303 A 1 HETATM 28 C C29 LBN . . . G 6 121.024 98.63 121.833 1 130.3 ? C29 LBN 303 A 1 HETATM 29 C C30 LBN . . . G 6 121.341 99.242 120.438 1 129.61 ? C30 LBN 303 A 1 HETATM 30 C C31 LBN . . . G 6 122.562 98.515 119.787 1 128.63 ? C31 LBN 303 A 1 HETATM 31 C C32 LBN . . . G 6 123.692 99.523 119.411 1 127.58 ? C32 LBN 303 A 1 HETATM 32 C C33 LBN . . . G 6 124.611 99.777 120.648 1 126.14 ? C33 LBN 303 A 1 HETATM 33 C C34 LBN . . . G 6 117.328 102.715 120.598 1 135.46 ? C34 LBN 303 A 1 HETATM 34 O O7 LBN . . . G 6 117.4 103.719 121.609 1 138.17 ? O7 LBN 303 A 1 HETATM 35 C C35 LBN . . . G 6 118.608 102.385 119.776 1 133.45 ? C35 LBN 303 A 1 HETATM 36 O O8 LBN . . . G 6 116.303 102.15 120.383 1 135.63 ? O8 LBN 303 A 1 HETATM 37 C C36 LBN . . . G 6 118.29 101.507 118.533 1 131.89 ? C36 LBN 303 A 1 HETATM 38 C C37 LBN . . . G 6 119.596 101.388 117.707 1 130.32 ? C37 LBN 303 A 1 HETATM 39 C C38 LBN . . . G 6 119.426 100.432 116.497 1 128.93 ? C38 LBN 303 A 1 HETATM 40 C C39 LBN . . . G 6 120.748 99.671 116.209 1 127.93 ? C39 LBN 303 A 1 HETATM 41 C C40 LBN . . . G 6 121.931 100.648 116.006 1 127.29 ? C40 LBN 303 A 1 HETATM 42 C C41 LBN . . . G 6 123.117 99.904 115.37 1 126.63 ? C41 LBN 303 A 1 HETATM 43 C C42 LBN . . . G 6 124.326 100.864 115.264 1 125.73 ? C42 LBN 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #