data_8T09 # _model_server_result.job_id ooPn2j3a21gPmUtiLjR52w _model_server_result.datetime_utc '2024-11-15 06:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 8T09 # _exptl.entry_id 8T09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.544 _cell.angle_gamma 90 _cell.entry_id 8T09 _cell.length_a 57.53 _cell.length_b 77.922 _cell.length_c 58.711 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 302 A LYS 720 1_555 C C8 XHZ . A XHZ 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 B OG SER 17 B SER 17 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc2 B OG1 THR 35 B THR 35 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 D MG MG . B MG 200 1_555 E O1B GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 D MG MG . B MG 200 1_555 E O1G GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 D MG MG . B MG 200 1_555 G O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 D MG MG . B MG 200 1_555 G O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8T09 _atom_sites.fract_transf_matrix[1][1] 0.017382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000469 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 XHZ A 1 801 801 XHZ DRG . D 4 MG B 1 200 200 MG MG . E 5 GNP B 1 201 201 GNP GNP . F 6 HOH A 1 901 44 HOH HOH . F 6 HOH A 2 902 55 HOH HOH . F 6 HOH A 3 903 7 HOH HOH . F 6 HOH A 4 904 10 HOH HOH . F 6 HOH A 5 905 24 HOH HOH . F 6 HOH A 6 906 3 HOH HOH . F 6 HOH A 7 907 15 HOH HOH . F 6 HOH A 8 908 56 HOH HOH . F 6 HOH A 9 909 57 HOH HOH . F 6 HOH A 10 910 1 HOH HOH . F 6 HOH A 11 911 14 HOH HOH . F 6 HOH A 12 912 45 HOH HOH . F 6 HOH A 13 913 9 HOH HOH . F 6 HOH A 14 914 19 HOH HOH . F 6 HOH A 15 915 54 HOH HOH . F 6 HOH A 16 916 6 HOH HOH . F 6 HOH A 17 917 8 HOH HOH . F 6 HOH A 18 918 46 HOH HOH . F 6 HOH A 19 919 13 HOH HOH . F 6 HOH A 20 920 16 HOH HOH . F 6 HOH A 21 921 47 HOH HOH . F 6 HOH A 22 922 11 HOH HOH . F 6 HOH A 23 923 12 HOH HOH . F 6 HOH A 24 924 26 HOH HOH . F 6 HOH A 25 925 23 HOH HOH . F 6 HOH A 26 926 22 HOH HOH . F 6 HOH A 27 927 20 HOH HOH . F 6 HOH A 28 928 5 HOH HOH . F 6 HOH A 29 929 34 HOH HOH . F 6 HOH A 30 930 50 HOH HOH . F 6 HOH A 31 931 25 HOH HOH . F 6 HOH A 32 932 21 HOH HOH . F 6 HOH A 33 933 48 HOH HOH . F 6 HOH A 34 934 51 HOH HOH . G 6 HOH B 1 301 28 HOH HOH . G 6 HOH B 2 302 33 HOH HOH . G 6 HOH B 3 303 30 HOH HOH . G 6 HOH B 4 304 35 HOH HOH . G 6 HOH B 5 305 42 HOH HOH . G 6 HOH B 6 306 37 HOH HOH . G 6 HOH B 7 307 31 HOH HOH . G 6 HOH B 8 308 58 HOH HOH . G 6 HOH B 9 309 2 HOH HOH . G 6 HOH B 10 310 52 HOH HOH . G 6 HOH B 11 311 38 HOH HOH . G 6 HOH B 12 312 32 HOH HOH . G 6 HOH B 13 313 27 HOH HOH . G 6 HOH B 14 314 40 HOH HOH . G 6 HOH B 15 315 36 HOH HOH . G 6 HOH B 16 316 29 HOH HOH . G 6 HOH B 17 317 53 HOH HOH . G 6 HOH B 18 318 43 HOH HOH . G 6 HOH B 19 319 41 HOH HOH . G 6 HOH B 20 320 4 HOH HOH . G 6 HOH B 21 321 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 3.055 _atom_site.Cartn_y 8.358 _atom_site.Cartn_z 27.771 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 200 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #