data_8T09 # _model_server_result.job_id n_g15HB6nn1Q9fin4ncIAw _model_server_result.datetime_utc '2024-11-15 06:37:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 8T09 # _exptl.entry_id 8T09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethynyl-2-hydroxynaphthalene-1-carbaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.544 _cell.angle_gamma 90 _cell.entry_id 8T09 _cell.length_a 57.53 _cell.length_b 77.922 _cell.length_c 58.711 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 302 A LYS 720 1_555 C C8 XHZ . A XHZ 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? metalc ? metalc1 B OG SER 17 B SER 17 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc2 B OG1 THR 35 B THR 35 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 D MG MG . B MG 200 1_555 E O1B GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 D MG MG . B MG 200 1_555 E O1G GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 D MG MG . B MG 200 1_555 G O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 D MG MG . B MG 200 1_555 G O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'C13 H8 O2' _chem_comp.formula_weight 196.201 _chem_comp.id XHZ _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethynyl-2-hydroxynaphthalene-1-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XHZ trip 427 n n C2 C3 XHZ sing 428 n n C13 C3 XHZ doub 429 n y C13 C12 XHZ sing 430 n y C3 C4 XHZ sing 431 n y C11 C12 XHZ sing 432 n y C11 C10 XHZ doub 433 n y C12 C6 XHZ doub 434 n y C10 C9 XHZ sing 435 n y C4 C5 XHZ doub 436 n y C6 C5 XHZ sing 437 n y C6 C7 XHZ sing 438 n y C9 C7 XHZ doub 439 n y C9 O2 XHZ sing 440 n n C7 C8 XHZ sing 441 n n C8 O1 XHZ doub 442 n n C4 H4 XHZ sing 443 n n C5 H5 XHZ sing 444 n n C11 H11 XHZ sing 445 n n C8 H8 XHZ sing 446 n n C10 H10 XHZ sing 447 n n C13 H13 XHZ sing 448 n n C1 H1 XHZ sing 449 n n O2 HO2 XHZ sing 450 n n # _atom_sites.entry_id 8T09 _atom_sites.fract_transf_matrix[1][1] 0.017382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000469 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 XHZ A 1 801 801 XHZ DRG . D 4 MG B 1 200 200 MG MG . E 5 GNP B 1 201 201 GNP GNP . F 6 HOH A 1 901 44 HOH HOH . F 6 HOH A 2 902 55 HOH HOH . F 6 HOH A 3 903 7 HOH HOH . F 6 HOH A 4 904 10 HOH HOH . F 6 HOH A 5 905 24 HOH HOH . F 6 HOH A 6 906 3 HOH HOH . F 6 HOH A 7 907 15 HOH HOH . F 6 HOH A 8 908 56 HOH HOH . F 6 HOH A 9 909 57 HOH HOH . F 6 HOH A 10 910 1 HOH HOH . F 6 HOH A 11 911 14 HOH HOH . F 6 HOH A 12 912 45 HOH HOH . F 6 HOH A 13 913 9 HOH HOH . F 6 HOH A 14 914 19 HOH HOH . F 6 HOH A 15 915 54 HOH HOH . F 6 HOH A 16 916 6 HOH HOH . F 6 HOH A 17 917 8 HOH HOH . F 6 HOH A 18 918 46 HOH HOH . F 6 HOH A 19 919 13 HOH HOH . F 6 HOH A 20 920 16 HOH HOH . F 6 HOH A 21 921 47 HOH HOH . F 6 HOH A 22 922 11 HOH HOH . F 6 HOH A 23 923 12 HOH HOH . F 6 HOH A 24 924 26 HOH HOH . F 6 HOH A 25 925 23 HOH HOH . F 6 HOH A 26 926 22 HOH HOH . F 6 HOH A 27 927 20 HOH HOH . F 6 HOH A 28 928 5 HOH HOH . F 6 HOH A 29 929 34 HOH HOH . F 6 HOH A 30 930 50 HOH HOH . F 6 HOH A 31 931 25 HOH HOH . F 6 HOH A 32 932 21 HOH HOH . F 6 HOH A 33 933 48 HOH HOH . F 6 HOH A 34 934 51 HOH HOH . G 6 HOH B 1 301 28 HOH HOH . G 6 HOH B 2 302 33 HOH HOH . G 6 HOH B 3 303 30 HOH HOH . G 6 HOH B 4 304 35 HOH HOH . G 6 HOH B 5 305 42 HOH HOH . G 6 HOH B 6 306 37 HOH HOH . G 6 HOH B 7 307 31 HOH HOH . G 6 HOH B 8 308 58 HOH HOH . G 6 HOH B 9 309 2 HOH HOH . G 6 HOH B 10 310 52 HOH HOH . G 6 HOH B 11 311 38 HOH HOH . G 6 HOH B 12 312 32 HOH HOH . G 6 HOH B 13 313 27 HOH HOH . G 6 HOH B 14 314 40 HOH HOH . G 6 HOH B 15 315 36 HOH HOH . G 6 HOH B 16 316 29 HOH HOH . G 6 HOH B 17 317 53 HOH HOH . G 6 HOH B 18 318 43 HOH HOH . G 6 HOH B 19 319 41 HOH HOH . G 6 HOH B 20 320 4 HOH HOH . G 6 HOH B 21 321 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 XHZ . . . C 3 28.164 23.119 10.62 1 36.8 ? C4 XHZ 801 A 1 HETATM 2 C C5 XHZ . . . C 3 29.383 22.536 10.842 1 40.79 ? C5 XHZ 801 A 1 HETATM 3 C C6 XHZ . . . C 3 29.548 21.132 10.763 1 46.06 ? C6 XHZ 801 A 1 HETATM 4 C C11 XHZ . . . C 3 28.559 18.918 10.355 1 40.23 ? C11 XHZ 801 A 1 HETATM 5 C C7 XHZ . . . C 3 30.819 20.464 10.989 1 46.28 ? C7 XHZ 801 A 1 HETATM 6 C C8 XHZ . . . C 3 32.051 21.173 11.321 1 51.86 ? C8 XHZ 801 A 1 HETATM 7 C C9 XHZ . . . C 3 30.894 19.077 10.886 1 45.86 ? C9 XHZ 801 A 1 HETATM 8 C C10 XHZ . . . C 3 29.754 18.312 10.571 1 46.15 ? C10 XHZ 801 A 1 HETATM 9 C C12 XHZ . . . C 3 28.413 20.341 10.442 1 34.56 ? C12 XHZ 801 A 1 HETATM 10 C C13 XHZ . . . C 3 27.167 20.971 10.216 1 31.68 ? C13 XHZ 801 A 1 HETATM 11 C C3 XHZ . . . C 3 27.024 22.34 10.302 1 40.02 ? C3 XHZ 801 A 1 HETATM 12 C C1 XHZ . . . C 3 24.715 23.487 9.84 1 23.42 ? C1 XHZ 801 A 1 HETATM 13 C C2 XHZ . . . C 3 25.748 22.969 10.065 1 35.41 ? C2 XHZ 801 A 1 HETATM 14 O O2 XHZ . . . C 3 32.043 18.402 11.091 1 58.45 ? O2 XHZ 801 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 14 #