data_8T0N # _model_server_result.job_id -C1N5vGtmrunaqJ1f77sSw _model_server_result.datetime_utc '2024-12-23 06:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8T0N # _exptl.entry_id 8T0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T0N _cell.length_a 109.267 _cell.length_b 109.267 _cell.length_c 83.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 A,B,C,D,E,F,G 1 3 A,B,C,D,E,F,G 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 109.267 0 0 3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 109.267 0 0 4 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B YB YB . A YB 601 1_555 G O HOH . A HOH 761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc2 B YB YB . A YB 601 1_555 G O HOH . A HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 B YB YB . A YB 601 1_555 G O HOH . A HOH 885 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc4 B YB YB . A YB 601 1_555 G O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 B YB YB . A YB 601 1_555 G O HOH . A HOH 935 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc6 B YB YB . A YB 601 1_555 G O HOH . A HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 B YB YB . A YB 601 1_555 G O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc8 B YB YB . A YB 601 1_555 G O HOH . A HOH 938 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc9 C YB YB . A YB 602 1_555 E O2A NAD . A NAD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc10 C YB YB . A YB 602 1_555 E O1N NAD . A NAD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc11 C YB YB . A YB 602 1_555 G O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc12 C YB YB . A YB 602 1_555 G O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc13 C YB YB . A YB 602 1_555 G O HOH . A HOH 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc14 C YB YB . A YB 602 1_555 G O HOH . A HOH 945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8T0N _atom_sites.fract_transf_matrix[1][1] 0.009152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YB A 1 601 1 YB YB . C 2 YB A 1 602 2 YB YB . D 3 Y0B A 1 603 1 Y0B c87 . E 4 NAD A 1 604 1 NAD NAD . F 5 CL A 1 605 1 CL CL . G 6 HOH A 1 701 211 HOH HOH . G 6 HOH A 2 702 152 HOH HOH . G 6 HOH A 3 703 216 HOH HOH . G 6 HOH A 4 704 20 HOH HOH . G 6 HOH A 5 705 26 HOH HOH . G 6 HOH A 6 706 248 HOH HOH . G 6 HOH A 7 707 232 HOH HOH . G 6 HOH A 8 708 175 HOH HOH . G 6 HOH A 9 709 133 HOH HOH . G 6 HOH A 10 710 139 HOH HOH . G 6 HOH A 11 711 134 HOH HOH . G 6 HOH A 12 712 173 HOH HOH . G 6 HOH A 13 713 37 HOH HOH . G 6 HOH A 14 714 185 HOH HOH . G 6 HOH A 15 715 213 HOH HOH . G 6 HOH A 16 716 235 HOH HOH . G 6 HOH A 17 717 188 HOH HOH . G 6 HOH A 18 718 154 HOH HOH . G 6 HOH A 19 719 64 HOH HOH . G 6 HOH A 20 720 50 HOH HOH . G 6 HOH A 21 721 80 HOH HOH . G 6 HOH A 22 722 197 HOH HOH . G 6 HOH A 23 723 252 HOH HOH . G 6 HOH A 24 724 241 HOH HOH . G 6 HOH A 25 725 112 HOH HOH . G 6 HOH A 26 726 227 HOH HOH . G 6 HOH A 27 727 195 HOH HOH . G 6 HOH A 28 728 12 HOH HOH . G 6 HOH A 29 729 78 HOH HOH . G 6 HOH A 30 730 116 HOH HOH . G 6 HOH A 31 731 56 HOH HOH . G 6 HOH A 32 732 74 HOH HOH . G 6 HOH A 33 733 28 HOH HOH . G 6 HOH A 34 734 92 HOH HOH . G 6 HOH A 35 735 122 HOH HOH . G 6 HOH A 36 736 100 HOH HOH . G 6 HOH A 37 737 145 HOH HOH . G 6 HOH A 38 738 136 HOH HOH . G 6 HOH A 39 739 101 HOH HOH . G 6 HOH A 40 740 225 HOH HOH . G 6 HOH A 41 741 140 HOH HOH . G 6 HOH A 42 742 11 HOH HOH . G 6 HOH A 43 743 104 HOH HOH . G 6 HOH A 44 744 167 HOH HOH . G 6 HOH A 45 745 18 HOH HOH . G 6 HOH A 46 746 147 HOH HOH . G 6 HOH A 47 747 166 HOH HOH . G 6 HOH A 48 748 244 HOH HOH . G 6 HOH A 49 749 48 HOH HOH . G 6 HOH A 50 750 125 HOH HOH . G 6 HOH A 51 751 142 HOH HOH . G 6 HOH A 52 752 144 HOH HOH . G 6 HOH A 53 753 158 HOH HOH . G 6 HOH A 54 754 96 HOH HOH . G 6 HOH A 55 755 33 HOH HOH . G 6 HOH A 56 756 182 HOH HOH . G 6 HOH A 57 757 124 HOH HOH . G 6 HOH A 58 758 32 HOH HOH . G 6 HOH A 59 759 27 HOH HOH . G 6 HOH A 60 760 25 HOH HOH . G 6 HOH A 61 761 4 HOH HOH . G 6 HOH A 62 762 86 HOH HOH . G 6 HOH A 63 763 110 HOH HOH . G 6 HOH A 64 764 63 HOH HOH . G 6 HOH A 65 765 203 HOH HOH . G 6 HOH A 66 766 246 HOH HOH . G 6 HOH A 67 767 198 HOH HOH . G 6 HOH A 68 768 240 HOH HOH . G 6 HOH A 69 769 114 HOH HOH . G 6 HOH A 70 770 87 HOH HOH . G 6 HOH A 71 771 19 HOH HOH . G 6 HOH A 72 772 111 HOH HOH . G 6 HOH A 73 773 131 HOH HOH . G 6 HOH A 74 774 17 HOH HOH . G 6 HOH A 75 775 206 HOH HOH . G 6 HOH A 76 776 79 HOH HOH . G 6 HOH A 77 777 170 HOH HOH . G 6 HOH A 78 778 196 HOH HOH . G 6 HOH A 79 779 14 HOH HOH . G 6 HOH A 80 780 108 HOH HOH . G 6 HOH A 81 781 59 HOH HOH . G 6 HOH A 82 782 236 HOH HOH . G 6 HOH A 83 783 251 HOH HOH . G 6 HOH A 84 784 233 HOH HOH . G 6 HOH A 85 785 129 HOH HOH . G 6 HOH A 86 786 243 HOH HOH . G 6 HOH A 87 787 115 HOH HOH . G 6 HOH A 88 788 221 HOH HOH . G 6 HOH A 89 789 212 HOH HOH . G 6 HOH A 90 790 209 HOH HOH . G 6 HOH A 91 791 81 HOH HOH . G 6 HOH A 92 792 70 HOH HOH . G 6 HOH A 93 793 52 HOH HOH . G 6 HOH A 94 794 82 HOH HOH . G 6 HOH A 95 795 119 HOH HOH . G 6 HOH A 96 796 183 HOH HOH . G 6 HOH A 97 797 46 HOH HOH . G 6 HOH A 98 798 176 HOH HOH . G 6 HOH A 99 799 210 HOH HOH . G 6 HOH A 100 800 38 HOH HOH . G 6 HOH A 101 801 10 HOH HOH . G 6 HOH A 102 802 193 HOH HOH . G 6 HOH A 103 803 54 HOH HOH . G 6 HOH A 104 804 219 HOH HOH . G 6 HOH A 105 805 76 HOH HOH . G 6 HOH A 106 806 3 HOH HOH . G 6 HOH A 107 807 60 HOH HOH . G 6 HOH A 108 808 220 HOH HOH . G 6 HOH A 109 809 36 HOH HOH . G 6 HOH A 110 810 99 HOH HOH . G 6 HOH A 111 811 57 HOH HOH . G 6 HOH A 112 812 105 HOH HOH . G 6 HOH A 113 813 217 HOH HOH . G 6 HOH A 114 814 157 HOH HOH . G 6 HOH A 115 815 156 HOH HOH . G 6 HOH A 116 816 77 HOH HOH . G 6 HOH A 117 817 230 HOH HOH . G 6 HOH A 118 818 199 HOH HOH . G 6 HOH A 119 819 174 HOH HOH . G 6 HOH A 120 820 15 HOH HOH . G 6 HOH A 121 821 45 HOH HOH . G 6 HOH A 122 822 149 HOH HOH . G 6 HOH A 123 823 189 HOH HOH . G 6 HOH A 124 824 223 HOH HOH . G 6 HOH A 125 825 178 HOH HOH . G 6 HOH A 126 826 146 HOH HOH . G 6 HOH A 127 827 132 HOH HOH . G 6 HOH A 128 828 61 HOH HOH . G 6 HOH A 129 829 138 HOH HOH . G 6 HOH A 130 830 113 HOH HOH . G 6 HOH A 131 831 179 HOH HOH . G 6 HOH A 132 832 107 HOH HOH . G 6 HOH A 133 833 250 HOH HOH . G 6 HOH A 134 834 164 HOH HOH . G 6 HOH A 135 835 22 HOH HOH . G 6 HOH A 136 836 151 HOH HOH . G 6 HOH A 137 837 177 HOH HOH . G 6 HOH A 138 838 16 HOH HOH . G 6 HOH A 139 839 202 HOH HOH . G 6 HOH A 140 840 91 HOH HOH . G 6 HOH A 141 841 238 HOH HOH . G 6 HOH A 142 842 103 HOH HOH . G 6 HOH A 143 843 161 HOH HOH . G 6 HOH A 144 844 163 HOH HOH . G 6 HOH A 145 845 85 HOH HOH . G 6 HOH A 146 846 69 HOH HOH . G 6 HOH A 147 847 35 HOH HOH . G 6 HOH A 148 848 89 HOH HOH . G 6 HOH A 149 849 84 HOH HOH . G 6 HOH A 150 850 29 HOH HOH . G 6 HOH A 151 851 191 HOH HOH . G 6 HOH A 152 852 208 HOH HOH . G 6 HOH A 153 853 30 HOH HOH . G 6 HOH A 154 854 121 HOH HOH . G 6 HOH A 155 855 120 HOH HOH . G 6 HOH A 156 856 93 HOH HOH . G 6 HOH A 157 857 229 HOH HOH . G 6 HOH A 158 858 159 HOH HOH . G 6 HOH A 159 859 90 HOH HOH . G 6 HOH A 160 860 53 HOH HOH . G 6 HOH A 161 861 150 HOH HOH . G 6 HOH A 162 862 13 HOH HOH . G 6 HOH A 163 863 102 HOH HOH . G 6 HOH A 164 864 42 HOH HOH . G 6 HOH A 165 865 117 HOH HOH . G 6 HOH A 166 866 123 HOH HOH . G 6 HOH A 167 867 39 HOH HOH . G 6 HOH A 168 868 41 HOH HOH . G 6 HOH A 169 869 135 HOH HOH . G 6 HOH A 170 870 65 HOH HOH . G 6 HOH A 171 871 190 HOH HOH . G 6 HOH A 172 872 58 HOH HOH . G 6 HOH A 173 873 24 HOH HOH . G 6 HOH A 174 874 143 HOH HOH . G 6 HOH A 175 875 127 HOH HOH . G 6 HOH A 176 876 34 HOH HOH . G 6 HOH A 177 877 49 HOH HOH . G 6 HOH A 178 878 66 HOH HOH . G 6 HOH A 179 879 83 HOH HOH . G 6 HOH A 180 880 31 HOH HOH . G 6 HOH A 181 881 148 HOH HOH . G 6 HOH A 182 882 184 HOH HOH . G 6 HOH A 183 883 72 HOH HOH . G 6 HOH A 184 884 141 HOH HOH . G 6 HOH A 185 885 6 HOH HOH . G 6 HOH A 186 886 97 HOH HOH . G 6 HOH A 187 887 222 HOH HOH . G 6 HOH A 188 888 242 HOH HOH . G 6 HOH A 189 889 21 HOH HOH . G 6 HOH A 190 890 118 HOH HOH . G 6 HOH A 191 891 43 HOH HOH . G 6 HOH A 192 892 71 HOH HOH . G 6 HOH A 193 893 239 HOH HOH . G 6 HOH A 194 894 231 HOH HOH . G 6 HOH A 195 895 180 HOH HOH . G 6 HOH A 196 896 62 HOH HOH . G 6 HOH A 197 897 215 HOH HOH . G 6 HOH A 198 898 68 HOH HOH . G 6 HOH A 199 899 205 HOH HOH . G 6 HOH A 200 900 200 HOH HOH . G 6 HOH A 201 901 23 HOH HOH . G 6 HOH A 202 902 55 HOH HOH . G 6 HOH A 203 903 171 HOH HOH . G 6 HOH A 204 904 75 HOH HOH . G 6 HOH A 205 905 194 HOH HOH . G 6 HOH A 206 906 67 HOH HOH . G 6 HOH A 207 907 109 HOH HOH . G 6 HOH A 208 908 245 HOH HOH . G 6 HOH A 209 909 44 HOH HOH . G 6 HOH A 210 910 47 HOH HOH . G 6 HOH A 211 911 8 HOH HOH . G 6 HOH A 212 912 128 HOH HOH . G 6 HOH A 213 913 218 HOH HOH . G 6 HOH A 214 914 162 HOH HOH . G 6 HOH A 215 915 237 HOH HOH . G 6 HOH A 216 916 228 HOH HOH . G 6 HOH A 217 917 155 HOH HOH . G 6 HOH A 218 918 224 HOH HOH . G 6 HOH A 219 919 137 HOH HOH . G 6 HOH A 220 920 106 HOH HOH . G 6 HOH A 221 921 249 HOH HOH . G 6 HOH A 222 922 204 HOH HOH . G 6 HOH A 223 923 187 HOH HOH . G 6 HOH A 224 924 9 HOH HOH . G 6 HOH A 225 925 234 HOH HOH . G 6 HOH A 226 926 214 HOH HOH . G 6 HOH A 227 927 130 HOH HOH . G 6 HOH A 228 928 153 HOH HOH . G 6 HOH A 229 929 165 HOH HOH . G 6 HOH A 230 930 73 HOH HOH . G 6 HOH A 231 931 40 HOH HOH . G 6 HOH A 232 932 201 HOH HOH . G 6 HOH A 233 933 98 HOH HOH . G 6 HOH A 234 934 126 HOH HOH . G 6 HOH A 235 935 2 HOH HOH . G 6 HOH A 236 936 5 HOH HOH . G 6 HOH A 237 937 88 HOH HOH . G 6 HOH A 238 938 1 HOH HOH . G 6 HOH A 239 939 7 HOH HOH . G 6 HOH A 240 940 95 HOH HOH . G 6 HOH A 241 941 94 HOH HOH . G 6 HOH A 242 942 51 HOH HOH . G 6 HOH A 243 943 168 HOH HOH . G 6 HOH A 244 944 169 HOH HOH . G 6 HOH A 245 945 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 30.507 _atom_site.Cartn_y -29.64 _atom_site.Cartn_z 40.018 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #