data_8T0Q # _model_server_result.job_id uK-LpEGosajFTvzQTH4WFg _model_server_result.datetime_utc '2025-01-07 08:27:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 8T0Q # _exptl.entry_id 8T0Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 247.142 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T0Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 144 A LYS 144 1_555 F C4A PLP . A PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B NZ LYS 144 B LYS 144 1_555 H C4A PLP . B PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 481 n y N1 C6 PLP sing 482 n y C2 C2A PLP sing 483 n n C2 C3 PLP sing 484 n y C2A H2A1 PLP sing 485 n n C2A H2A2 PLP sing 486 n n C2A H2A3 PLP sing 487 n n C3 O3 PLP sing 488 n n C3 C4 PLP doub 489 n y O3 HO3 PLP sing 490 n n C4 C4A PLP sing 491 n n C4 C5 PLP sing 492 n y C4A O4A PLP doub 493 n n C4A H4A PLP sing 494 n n C5 C6 PLP doub 495 n y C5 C5A PLP sing 496 n n C6 H6 PLP sing 497 n n C5A O4P PLP sing 498 n n C5A H5A1 PLP sing 499 n n C5A H5A2 PLP sing 500 n n O4P P PLP sing 501 n n P O1P PLP doub 502 n n P O2P PLP sing 503 n n P O3P PLP sing 504 n n O2P HOP2 PLP sing 505 n n O3P HOP3 PLP sing 506 n n # _atom_sites.entry_id 8T0Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 B12 A 1 401 401 B12 B12 . F 4 PLP A 1 402 601 PLP PLP . G 3 B12 B 1 401 401 B12 B12 . H 4 PLP B 1 402 601 PLP PLP . I 5 5AD C 1 601 302 5AD 5AD . J 5 5AD D 1 601 302 5AD 5AD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . F 4 136.085 134.782 157.053 1 92.09 ? N1 PLP 402 A 1 HETATM 2 C C2 PLP . . . F 4 136.599 134.546 155.798 1 84.87 ? C2 PLP 402 A 1 HETATM 3 C C2A PLP . . . F 4 136.938 133.14 155.398 1 88.53 ? C2A PLP 402 A 1 HETATM 4 C C3 PLP . . . F 4 136.801 135.602 154.918 1 83.33 ? C3 PLP 402 A 1 HETATM 5 O O3 PLP . . . F 4 137.308 135.351 153.67 1 90.16 ? O3 PLP 402 A 1 HETATM 6 C C4 PLP . . . F 4 136.482 136.902 155.299 1 83.98 ? C4 PLP 402 A 1 HETATM 7 C C4A PLP . . . F 4 137.075 138.049 154.536 1 89.8 ? C4A PLP 402 A 1 HETATM 8 C C5 PLP . . . F 4 135.962 137.129 156.57 1 90.06 ? C5 PLP 402 A 1 HETATM 9 C C6 PLP . . . F 4 135.768 136.065 157.439 1 93.51 ? C6 PLP 402 A 1 HETATM 10 C C5A PLP . . . F 4 135.597 138.517 157.046 1 85.63 ? C5A PLP 402 A 1 HETATM 11 O O4P PLP . . . F 4 136.708 139.384 157.006 1 82.68 ? O4P PLP 402 A 1 HETATM 12 P P PLP . . . F 4 136.821 140.609 158.045 1 97.84 ? P PLP 402 A 1 HETATM 13 O O1P PLP . . . F 4 136.332 141.88 157.394 1 97.53 ? O1P PLP 402 A 1 HETATM 14 O O2P PLP . . . F 4 138.262 140.77 158.465 1 101.04 ? O2P PLP 402 A 1 HETATM 15 O O3P PLP . . . F 4 135.981 140.313 159.262 1 78.55 ? O3P PLP 402 A 1 HETATM 16 H H2A1 PLP . . . F 4 137.333 133.124 154.383 1 87.47 ? H2A1 PLP 402 A 1 HETATM 17 H H2A2 PLP . . . F 4 136.038 132.526 155.446 1 87.84 ? H2A2 PLP 402 A 1 HETATM 18 H H2A3 PLP . . . F 4 137.685 132.74 156.084 1 86.53 ? H2A3 PLP 402 A 1 HETATM 19 H HO3 PLP . . . F 4 137.007 136.038 153.041 1 87.46 ? HO3 PLP 402 A 1 HETATM 20 H H4A PLP . . . F 4 136.428 138.732 153.986 1 87.81 ? H4A PLP 402 A 1 HETATM 21 H H6 PLP . . . F 4 135.362 136.247 158.434 1 87.91 ? H6 PLP 402 A 1 HETATM 22 H H5A1 PLP . . . F 4 135.21 138.455 158.062 1 86.94 ? H5A1 PLP 402 A 1 HETATM 23 H H5A2 PLP . . . F 4 134.806 138.918 156.412 1 86.98 ? H5A2 PLP 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #