data_8T0V
#
_model_server_result.job_id            qg4jWJ7ErhH1Pkkw4BV6OQ 
_model_server_result.datetime_utc      '2024-10-10 05:21:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t0v 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
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_entry.id    8T0V 
#
_exptl.entry_id    8T0V 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              251.242 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXYADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T0V 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T0V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NE2 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             133 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              133 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            CO 
_struct_conn.ptnr2_label_comp_id            B12 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             B12 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.354 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H13 N5 O3' 
_chem_comp.formula_weight    251.242 
_chem_comp.id                5AD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXYADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 5AD doub 1 n y 
N1 C6 5AD sing 2 n y 
C2 N3 5AD sing 3 n y 
C2 H2 5AD sing 4 n n 
N3 C4 5AD doub 5 n y 
C4 N9 5AD sing 6 n y 
C4 C5 5AD sing 7 n y 
N9 C8 5AD sing 8 n y 
N9 C1' 5AD sing 9 n n 
C8 N7 5AD doub 10 n y 
C8 H8 5AD sing 11 n n 
N7 C5 5AD sing 12 n y 
C5 C6 5AD doub 13 n y 
C6 N6 5AD sing 14 n n 
N6 HN61 5AD sing 15 n n 
N6 HN62 5AD sing 16 n n 
C1' C2' 5AD sing 17 n n 
C1' O4' 5AD sing 18 n n 
C1' H1' 5AD sing 19 n n 
C2' C3' 5AD sing 20 n n 
C2' O2' 5AD sing 21 n n 
C2' H2' 5AD sing 22 n n 
C3' C4' 5AD sing 23 n n 
C3' O3' 5AD sing 24 n n 
C3' H3' 5AD sing 25 n n 
C4' C5' 5AD sing 26 n n 
C4' O4' 5AD sing 27 n n 
C4' H4' 5AD sing 28 n n 
C5' "H5'1" 5AD sing 29 n n 
C5' "H5'2" 5AD sing 30 n n 
C5' "H5'3" 5AD sing 31 n n 
O2' HO2' 5AD sing 32 n n 
O3' HO3' 5AD sing 33 n n 
#
_atom_sites.entry_id                     8T0V 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 B12 B 1 301 301 B12 B12 . 
F 4 5AD D 1 601 602 5AD 5AD . 
G 5 X6I D 1 602 701 X6I PTH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 5AD . . . F 4 135.755 137.117 148.601 1 25.57 ? N1 5AD 601 D 1 
HETATM 2 C C2 5AD . . . F 4 135.453 138.16 149.368 1 23.49 ? C2 5AD 601 D 1 
HETATM 3 N N3 5AD . . . F 4 136.064 138.572 150.463 1 20.4 ? N3 5AD 601 D 1 
HETATM 4 C C4 5AD . . . F 4 137.098 137.789 150.768 1 23.73 ? C4 5AD 601 D 1 
HETATM 5 N N9 5AD . . . F 4 137.952 137.905 151.821 1 25.22 ? N9 5AD 601 D 1 
HETATM 6 C C8 5AD . . . F 4 138.843 136.873 151.708 1 22.35 ? C8 5AD 601 D 1 
HETATM 7 N N7 5AD . . . F 4 138.625 136.112 150.676 1 16.42 ? N7 5AD 601 D 1 
HETATM 8 C C5 5AD . . . F 4 137.531 136.673 150.072 1 23.26 ? C5 5AD 601 D 1 
HETATM 9 C C6 5AD . . . F 4 136.795 136.34 148.924 1 25.91 ? C6 5AD 601 D 1 
HETATM 10 N N6 5AD . . . F 4 137.102 135.291 148.161 1 22.73 ? N6 5AD 601 D 1 
HETATM 11 C C1' 5AD . . . F 4 137.879 138.957 152.83 1 22.12 ? C1' 5AD 601 D 1 
HETATM 12 C C2' 5AD . . . F 4 137.287 138.449 154.146 1 21.69 ? C2' 5AD 601 D 1 
HETATM 13 C C3' 5AD . . . F 4 138.192 139.142 155.159 1 26.43 ? C3' 5AD 601 D 1 
HETATM 14 C C4' 5AD . . . F 4 139.536 139.11 154.432 1 18.3 ? C4' 5AD 601 D 1 
HETATM 15 C C5' 5AD . . . F 4 140.265 137.791 154.478 1 18.04 ? C5' 5AD 601 D 1 
HETATM 16 O O4' 5AD . . . F 4 139.169 139.415 153.086 1 23.1 ? O4' 5AD 601 D 1 
HETATM 17 O O2' 5AD . . . F 4 135.973 138.935 154.208 1 18.38 ? O2' 5AD 601 D 1 
HETATM 18 O O3' 5AD . . . F 4 137.71 140.422 155.444 1 25.4 ? O3' 5AD 601 D 1 
HETATM 19 H H2 5AD . . . F 4 134.72 138.662 149.092 1 18.31 ? H2 5AD 601 D 1 
HETATM 20 H H8 5AD . . . F 4 139.53 136.745 152.321 1 18.68 ? H8 5AD 601 D 1 
HETATM 21 H HN61 5AD . . . F 4 136.982 135.322 147.31 1 19.06 ? HN61 5AD 601 D 1 
HETATM 22 H HN62 5AD . . . F 4 137.425 134.571 148.503 1 18.97 ? HN62 5AD 601 D 1 
HETATM 23 H H1' 5AD . . . F 4 137.336 139.667 152.457 1 18.29 ? H1' 5AD 601 D 1 
HETATM 24 H H2' 5AD . . . F 4 137.32 137.482 154.214 1 18.65 ? H2' 5AD 601 D 1 
HETATM 25 H H3' 5AD . . . F 4 138.242 138.593 155.957 1 19.16 ? H3' 5AD 601 D 1 
HETATM 26 H H4' 5AD . . . F 4 140.106 139.815 154.776 1 17.49 ? H4' 5AD 601 D 1 
HETATM 27 H "H5'1" 5AD . . . F 4 140.856 137.682 153.717 1 17.97 ? "H5'1" 5AD 601 D 1 
HETATM 28 H "H5'2" 5AD . . . F 4 139.626 137.061 154.454 1 17.82 ? "H5'2" 5AD 601 D 1 
HETATM 29 H "H5'3" 5AD . . . F 4 140.784 137.702 155.287 1 18.84 ? "H5'3" 5AD 601 D 1 
HETATM 30 H HO2' 5AD . . . F 4 135.557 138.683 153.511 1 18.96 ? HO2' 5AD 601 D 1 
HETATM 31 H HO3' 5AD . . . F 4 137.017 140.573 154.976 1 19.03 ? HO3' 5AD 601 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#