data_8T0Y
#
_model_server_result.job_id            HWSLrXzQVw48rJU2BpG4fg 
_model_server_result.datetime_utc      '2024-11-15 13:54:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t0y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":901}' 
#
_entry.id    8T0Y 
#
_exptl.entry_id    8T0Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              382.429 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T0Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T0Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 620 B GLY 643 1_555 G NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 B O GLY 620 A GLY 643 1_555 G NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc3 G NA NA . A NA 902 1_555 C O GLY 620 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc4 G NA NA . A NA 902 1_555 D O GLY 620 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
#
_chem_comp.formula           'C17 H35 O7 P' 
_chem_comp.formula_weight    382.429 
_chem_comp.id                NKN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '14:0 LPA;myristoyl lysophosphatidic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA PAC NKN sing 381 n n 
OAB PAC NKN sing 382 n n 
PAC OAD NKN doub 383 n n 
PAC OAF NKN sing 384 n n 
OAE CAK NKN doub 385 n n 
OAF CAG NKN sing 386 n n 
CAG CAH NKN sing 387 n n 
CAH CAI NKN sing 388 n n 
CAH OAY NKN sing 389 n n 
CAI OAJ NKN sing 390 n n 
OAJ CAK NKN sing 391 n n 
CAK CAL NKN sing 392 n n 
CAL CAM NKN sing 393 n n 
CAM CAN NKN sing 394 n n 
CAN CAO NKN sing 395 n n 
CAO CAP NKN sing 396 n n 
CAP CAQ NKN sing 397 n n 
CAQ CAR NKN sing 398 n n 
CAR CAS NKN sing 399 n n 
CAS CAT NKN sing 400 n n 
CAT CAU NKN sing 401 n n 
CAU CAV NKN sing 402 n n 
CAV CAW NKN sing 403 n n 
CAW CAX NKN sing 404 n n 
CAG HAG NKN sing 405 n n 
CAG HAGA NKN sing 406 n n 
CAH HAH NKN sing 407 n n 
CAI HAI NKN sing 408 n n 
CAI HAIA NKN sing 409 n n 
CAL HAL NKN sing 410 n n 
CAL HALA NKN sing 411 n n 
CAM HAM NKN sing 412 n n 
CAM HAMA NKN sing 413 n n 
CAN HAN NKN sing 414 n n 
CAN HANA NKN sing 415 n n 
CAO HAO NKN sing 416 n n 
CAO HAOA NKN sing 417 n n 
CAP HAP NKN sing 418 n n 
CAP HAPA NKN sing 419 n n 
CAQ HAQ NKN sing 420 n n 
CAQ HAQA NKN sing 421 n n 
CAR HAR NKN sing 422 n n 
CAR HARA NKN sing 423 n n 
CAS HAS NKN sing 424 n n 
CAS HASA NKN sing 425 n n 
CAT HAT NKN sing 426 n n 
CAT HATA NKN sing 427 n n 
CAU HAU NKN sing 428 n n 
CAU HAUA NKN sing 429 n n 
CAV HAV NKN sing 430 n n 
CAV HAVA NKN sing 431 n n 
CAW HAW NKN sing 432 n n 
CAW HAWA NKN sing 433 n n 
CAX HAX NKN sing 434 n n 
CAX HAXA NKN sing 435 n n 
CAX HAXB NKN sing 436 n n 
OAY HOAY NKN sing 437 n n 
OAA HOAA NKN sing 438 n n 
OAB HOAB NKN sing 439 n n 
#
_atom_sites.entry_id                     8T0Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 8IJ B 1 901 801 8IJ RLP . 
F 2 8IJ A 1 901 801 8IJ RLP . 
G 3 NA A 1 902 4 NA NA . 
H 4 NKN D 1 901 801 NKN LPA . 
I 2 8IJ C 1 901 801 8IJ RLP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA NKN . . . H 4 186.663 153.825 147.886 1 45 ? OAA NKN 901 D 1 
HETATM 2 O OAB NKN . . . H 4 186.138 154.989 149.797 1 45 ? OAB NKN 901 D 1 
HETATM 3 P PAC NKN . . . H 4 185.582 154.042 148.842 1 45 ? PAC NKN 901 D 1 
HETATM 4 O OAD NKN . . . H 4 185.489 152.795 149.59 1 45 ? OAD NKN 901 D 1 
HETATM 5 O OAE NKN . . . H 4 179.533 153.631 144.348 1 45 ? OAE NKN 901 D 1 
HETATM 6 O OAF NKN . . . H 4 184.155 154.521 148.178 1 45 ? OAF NKN 901 D 1 
HETATM 7 C CAG NKN . . . H 4 183.513 153.659 147.287 1 45 ? CAG NKN 901 D 1 
HETATM 8 C CAH NKN . . . H 4 183.674 154.184 145.862 1 45 ? CAH NKN 901 D 1 
HETATM 9 C CAI NKN . . . H 4 182.303 154.482 145.266 1 45 ? CAI NKN 901 D 1 
HETATM 10 O OAJ NKN . . . H 4 181.599 153.285 145.118 1 45 ? OAJ NKN 901 D 1 
HETATM 11 C CAK NKN . . . H 4 180.648 153.325 144.1 1 45 ? CAK NKN 901 D 1 
HETATM 12 C CAL NKN . . . H 4 181.046 152.976 142.671 1 45 ? CAL NKN 901 D 1 
HETATM 13 C CAM NKN . . . H 4 181.535 151.533 142.626 1 45 ? CAM NKN 901 D 1 
HETATM 14 C CAN NKN . . . H 4 181.331 150.979 141.222 1 45 ? CAN NKN 901 D 1 
HETATM 15 C CAO NKN . . . H 4 182.421 151.525 140.306 1 45 ? CAO NKN 901 D 1 
HETATM 16 C CAP NKN . . . H 4 181.78 152.275 139.146 1 45 ? CAP NKN 901 D 1 
HETATM 17 C CAQ NKN . . . H 4 181.421 151.294 138.042 1 45 ? CAQ NKN 901 D 1 
HETATM 18 C CAR NKN . . . H 4 182.42 151.462 136.902 1 45 ? CAR NKN 901 D 1 
HETATM 19 C CAS NKN . . . H 4 182.49 150.184 136.072 1 45 ? CAS NKN 901 D 1 
HETATM 20 C CAT NKN . . . H 4 181.123 149.626 135.675 1 45 ? CAT NKN 901 D 1 
HETATM 21 C CAU NKN . . . H 4 180.671 148.443 136.533 1 45 ? CAU NKN 901 D 1 
HETATM 22 C CAV NKN . . . H 4 180.901 147.11 135.828 1 45 ? CAV NKN 901 D 1 
HETATM 23 C CAW NKN . . . H 4 182.321 146.635 136.118 1 45 ? CAW NKN 901 D 1 
HETATM 24 C CAX NKN . . . H 4 182.7 145.522 135.147 1 45 ? CAX NKN 901 D 1 
HETATM 25 O OAY NKN . . . H 4 184.43 155.359 145.879 1 45 ? OAY NKN 901 D 1 
HETATM 26 H HAG NKN . . . H 4 182.46 153.608 147.543 1 66.98 ? HAG NKN 901 D 1 
HETATM 27 H HAGA NKN . . . H 4 183.951 152.668 147.356 1 66.98 ? HAGA NKN 901 D 1 
HETATM 28 H HAH NKN . . . H 4 184.176 153.439 145.257 1 66.98 ? HAH NKN 901 D 1 
HETATM 29 H HAI NKN . . . H 4 182.423 154.955 144.296 1 66.98 ? HAI NKN 901 D 1 
HETATM 30 H HAIA NKN . . . H 4 181.76 155.148 145.928 1 66.98 ? HAIA NKN 901 D 1 
HETATM 31 H HAL NKN . . . H 4 181.842 153.635 142.343 1 66.98 ? HAL NKN 901 D 1 
HETATM 32 H HALA NKN . . . H 4 180.188 153.09 142.018 1 66.98 ? HALA NKN 901 D 1 
HETATM 33 H HAM NKN . . . H 4 182.589 151.501 142.88 1 66.98 ? HAM NKN 901 D 1 
HETATM 34 H HAMA NKN . . . H 4 180.973 150.939 143.338 1 66.98 ? HAMA NKN 901 D 1 
HETATM 35 H HAN NKN . . . H 4 181.39 149.896 141.245 1 66.98 ? HAN NKN 901 D 1 
HETATM 36 H HANA NKN . . . H 4 180.356 151.28 140.853 1 66.98 ? HANA NKN 901 D 1 
HETATM 37 H HAO NKN . . . H 4 183.018 150.707 139.919 1 66.98 ? HAO NKN 901 D 1 
HETATM 38 H HAOA NKN . . . H 4 183.061 152.202 140.862 1 66.98 ? HAOA NKN 901 D 1 
HETATM 39 H HAP NKN . . . H 4 180.889 152.785 139.491 1 66.98 ? HAP NKN 901 D 1 
HETATM 40 H HAPA NKN . . . H 4 182.478 153.001 138.746 1 66.98 ? HAPA NKN 901 D 1 
HETATM 41 H HAQ NKN . . . H 4 180.418 151.505 137.685 1 66.98 ? HAQ NKN 901 D 1 
HETATM 42 H HAQA NKN . . . H 4 181.472 150.286 138.435 1 66.98 ? HAQA NKN 901 D 1 
HETATM 43 H HAR NKN . . . H 4 182.107 152.283 136.267 1 66.98 ? HAR NKN 901 D 1 
HETATM 44 H HARA NKN . . . H 4 183.402 151.682 137.31 1 66.98 ? HARA NKN 901 D 1 
HETATM 45 H HAS NKN . . . H 4 183.063 150.392 135.177 1 66.98 ? HAS NKN 901 D 1 
HETATM 46 H HAT NKN . . . H 4 181.12 149.356 134.628 1 66.98 ? HAT NKN 901 D 1 
HETATM 47 H HAU NKN . . . H 4 179.614 148.549 136.751 1 66.98 ? HAU NKN 901 D 1 
HETATM 48 H HAUA NKN . . . H 4 181.229 148.441 137.462 1 66.98 ? HAUA NKN 901 D 1 
HETATM 49 H HAV NKN . . . H 4 180.197 146.378 136.208 1 66.98 ? HAV NKN 901 D 1 
HETATM 50 H HAVA NKN . . . H 4 180.753 147.224 134.762 1 66.98 ? HAVA NKN 901 D 1 
HETATM 51 H HAW NKN . . . H 4 183.014 147.46 136.001 1 66.98 ? HAW NKN 901 D 1 
HETATM 52 H HAWA NKN . . . H 4 182.373 146.261 137.134 1 66.98 ? HAWA NKN 901 D 1 
HETATM 53 H HAX NKN . . . H 4 182.613 144.561 135.644 1 66.98 ? HAX NKN 901 D 1 
HETATM 54 H HAXA NKN . . . H 4 182.034 145.549 134.29 1 66.98 ? HAXA NKN 901 D 1 
HETATM 55 H HAXB NKN . . . H 4 183.724 145.669 134.816 1 66.98 ? HAXB NKN 901 D 1 
HETATM 56 H HOAY NKN . . . H 4 183.93 156.064 145.499 1 45 ? HOAY NKN 901 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           56 
#