data_8T1B # _model_server_result.job_id us3g_PbfXsiqd_daQ1z7cw _model_server_result.datetime_utc '2024-11-04 22:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1210}' # _entry.id 8T1B # _exptl.entry_id 8T1B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1165.315 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-{[(4-O-hexopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-4-{[(25R)-5beta,14beta,17beta-spirostan-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T1B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 Q N N ? 3 W N N ? 3 FA N N ? 3 IA N N ? 3 RA N N ? 3 UA N N ? 3 DB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 639 A CYS 639 1_555 A SG CYS 660 A CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 639 B CYS 639 1_555 B SG CYS 660 B CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 639 C CYS 639 1_555 C SG CYS 660 C CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 639 D CYS 639 1_555 D SG CYS 660 D CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 U NA NA . A NA 1217 1_555 EB O HOH . A HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 U NA NA . A NA 1217 1_555 EB O HOH . A HOH 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc3 U NA NA . A NA 1217 1_555 FB O HOH . B HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc4 U NA NA . A NA 1217 1_555 FB O HOH . B HOH 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc5 U NA NA . A NA 1217 1_555 GB O HOH . C HOH 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc6 U NA NA . A NA 1217 1_555 GB O HOH . C HOH 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc7 U NA NA . A NA 1217 1_555 HB O HOH . D HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'C56 H92 O25' _chem_comp.formula_weight 1165.315 _chem_comp.id YJ0 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-{[(4-O-hexopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-4-{[(25R)-5beta,14beta,17beta-spirostan-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8T1B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 9ZR A 1 1201 901 9ZR POV . F 2 9ZR A 1 1202 902 9ZR POV . G 2 9ZR A 1 1203 904 9ZR POV . H 2 9ZR A 1 1204 905 9ZR POV . I 2 9ZR A 1 1205 906 9ZR POV . J 2 9ZR A 1 1206 908 9ZR POV . K 2 9ZR A 1 1207 909 9ZR POV . L 2 9ZR A 1 1208 910 9ZR POV . M 2 9ZR A 1 1209 912 9ZR POV . N 3 YJ0 A 1 1210 911 YJ0 GDN . O 2 9ZR A 1 1211 901 9ZR POV . P 2 9ZR A 1 1212 907 9ZR POV . Q 3 YJ0 A 1 1213 903 YJ0 GDN . R 4 NA A 1 1214 1 NA NA . S 4 NA A 1 1215 2 NA NA . T 4 NA A 1 1216 3 NA NA . U 4 NA A 1 1217 4 NA NA . V 2 9ZR B 1 1201 907 9ZR POV . W 3 YJ0 B 1 1202 903 YJ0 GDN . X 2 9ZR B 1 1203 902 9ZR POV . Y 2 9ZR B 1 1204 904 9ZR POV . Z 2 9ZR B 1 1205 905 9ZR POV . AA 2 9ZR B 1 1206 906 9ZR POV . BA 2 9ZR B 1 1207 908 9ZR POV . CA 2 9ZR B 1 1208 909 9ZR POV . DA 2 9ZR B 1 1209 910 9ZR POV . EA 2 9ZR B 1 1210 912 9ZR POV . FA 3 YJ0 B 1 1211 911 YJ0 GDN . GA 2 9ZR C 1 1201 901 9ZR POV . HA 2 9ZR C 1 1202 907 9ZR POV . IA 3 YJ0 C 1 1203 903 YJ0 GDN . JA 2 9ZR C 1 1204 902 9ZR POV . KA 2 9ZR C 1 1205 904 9ZR POV . LA 2 9ZR C 1 1206 905 9ZR POV . MA 2 9ZR C 1 1207 906 9ZR POV . NA 2 9ZR C 1 1208 908 9ZR POV . OA 2 9ZR C 1 1209 909 9ZR POV . PA 2 9ZR C 1 1210 910 9ZR POV . QA 2 9ZR C 1 1211 912 9ZR POV . RA 3 YJ0 C 1 1212 911 YJ0 GDN . SA 2 9ZR D 1 1201 901 9ZR POV . TA 2 9ZR D 1 1202 907 9ZR POV . UA 3 YJ0 D 1 1203 903 YJ0 GDN . VA 2 9ZR D 1 1204 902 9ZR POV . WA 2 9ZR D 1 1205 904 9ZR POV . XA 2 9ZR D 1 1206 905 9ZR POV . YA 2 9ZR D 1 1207 906 9ZR POV . ZA 2 9ZR D 1 1208 908 9ZR POV . AB 2 9ZR D 1 1209 909 9ZR POV . BB 2 9ZR D 1 1210 910 9ZR POV . CB 2 9ZR D 1 1211 912 9ZR POV . DB 3 YJ0 D 1 1212 911 YJ0 GDN . EB 5 HOH A 1 1301 932 HOH HOH . EB 5 HOH A 2 1302 936 HOH HOH . EB 5 HOH A 3 1303 925 HOH HOH . EB 5 HOH A 4 1304 933 HOH HOH . EB 5 HOH A 5 1305 931 HOH HOH . EB 5 HOH A 6 1306 926 HOH HOH . EB 5 HOH A 7 1307 924 HOH HOH . EB 5 HOH A 8 1308 934 HOH HOH . EB 5 HOH A 9 1309 930 HOH HOH . EB 5 HOH A 10 1310 922 HOH HOH . EB 5 HOH A 11 1311 921 HOH HOH . EB 5 HOH A 12 1312 929 HOH HOH . EB 5 HOH A 13 1313 923 HOH HOH . EB 5 HOH A 14 1314 935 HOH HOH . EB 5 HOH A 15 1315 937 HOH HOH . EB 5 HOH A 16 1316 927 HOH HOH . EB 5 HOH A 17 1317 928 HOH HOH . EB 5 HOH A 18 1318 938 HOH HOH . FB 5 HOH B 1 1301 932 HOH HOH . FB 5 HOH B 2 1302 936 HOH HOH . FB 5 HOH B 3 1303 933 HOH HOH . FB 5 HOH B 4 1304 924 HOH HOH . FB 5 HOH B 5 1305 931 HOH HOH . FB 5 HOH B 6 1306 926 HOH HOH . FB 5 HOH B 7 1307 934 HOH HOH . FB 5 HOH B 8 1308 930 HOH HOH . FB 5 HOH B 9 1309 925 HOH HOH . FB 5 HOH B 10 1310 922 HOH HOH . FB 5 HOH B 11 1311 921 HOH HOH . FB 5 HOH B 12 1312 929 HOH HOH . FB 5 HOH B 13 1313 923 HOH HOH . FB 5 HOH B 14 1314 937 HOH HOH . FB 5 HOH B 15 1315 935 HOH HOH . FB 5 HOH B 16 1316 927 HOH HOH . FB 5 HOH B 17 1317 928 HOH HOH . FB 5 HOH B 18 1318 938 HOH HOH . GB 5 HOH C 1 1301 932 HOH HOH . GB 5 HOH C 2 1302 936 HOH HOH . GB 5 HOH C 3 1303 933 HOH HOH . GB 5 HOH C 4 1304 924 HOH HOH . GB 5 HOH C 5 1305 931 HOH HOH . GB 5 HOH C 6 1306 926 HOH HOH . GB 5 HOH C 7 1307 934 HOH HOH . GB 5 HOH C 8 1308 922 HOH HOH . GB 5 HOH C 9 1309 925 HOH HOH . GB 5 HOH C 10 1310 930 HOH HOH . GB 5 HOH C 11 1311 921 HOH HOH . GB 5 HOH C 12 1312 929 HOH HOH . GB 5 HOH C 13 1313 923 HOH HOH . GB 5 HOH C 14 1314 935 HOH HOH . GB 5 HOH C 15 1315 927 HOH HOH . GB 5 HOH C 16 1316 937 HOH HOH . GB 5 HOH C 17 1317 928 HOH HOH . GB 5 HOH C 18 1318 938 HOH HOH . HB 5 HOH D 1 1301 932 HOH HOH . HB 5 HOH D 2 1302 936 HOH HOH . HB 5 HOH D 3 1303 933 HOH HOH . HB 5 HOH D 4 1304 924 HOH HOH . HB 5 HOH D 5 1305 931 HOH HOH . HB 5 HOH D 6 1306 926 HOH HOH . HB 5 HOH D 7 1307 934 HOH HOH . HB 5 HOH D 8 1308 930 HOH HOH . HB 5 HOH D 9 1309 925 HOH HOH . HB 5 HOH D 10 1310 922 HOH HOH . HB 5 HOH D 11 1311 921 HOH HOH . HB 5 HOH D 12 1312 929 HOH HOH . HB 5 HOH D 13 1313 923 HOH HOH . HB 5 HOH D 14 1314 935 HOH HOH . HB 5 HOH D 15 1315 927 HOH HOH . HB 5 HOH D 16 1316 937 HOH HOH . HB 5 HOH D 17 1317 928 HOH HOH . HB 5 HOH D 18 1318 938 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YJ0 . . . N 3 116.102 152.412 139.724 1 13.5 ? C1 YJ0 1210 A 1 HETATM 2 C C2 YJ0 . . . N 3 116.477 152.738 141.165 1 13.5 ? C2 YJ0 1210 A 1 HETATM 3 C C3 YJ0 . . . N 3 117.255 151.612 141.821 1 13.5 ? C3 YJ0 1210 A 1 HETATM 4 C C10 YJ0 . . . N 3 114.463 151.227 147.157 1 13.5 ? C10 YJ0 1210 A 1 HETATM 5 C C11 YJ0 . . . N 3 115.253 151.869 148.29 1 13.5 ? C11 YJ0 1210 A 1 HETATM 6 C C12 YJ0 . . . N 3 116.648 152.095 147.675 1 13.5 ? C12 YJ0 1210 A 1 HETATM 7 C C13 YJ0 . . . N 3 117.413 153.031 148.62 1 13.5 ? C13 YJ0 1210 A 1 HETATM 8 C C14 YJ0 . . . N 3 117.461 152.493 150.051 1 13.5 ? C14 YJ0 1210 A 1 HETATM 9 C C15 YJ0 . . . N 3 116.067 152.181 150.606 1 13.5 ? C15 YJ0 1210 A 1 HETATM 10 C C16 YJ0 . . . N 3 115.284 151.234 149.678 1 13.5 ? C16 YJ0 1210 A 1 HETATM 11 C C17 YJ0 . . . N 3 113.862 151.006 150.206 1 13.5 ? C17 YJ0 1210 A 1 HETATM 12 C C18 YJ0 . . . N 3 113.799 150.861 151.696 1 13.5 ? C18 YJ0 1210 A 1 HETATM 13 C C19 YJ0 . . . N 3 114.669 151.408 152.515 1 13.5 ? C19 YJ0 1210 A 1 HETATM 14 C C20 YJ0 . . . N 3 116.088 151.718 152.091 1 13.5 ? C20 YJ0 1210 A 1 HETATM 15 C C21 YJ0 . . . N 3 116.606 152.859 152.966 1 13.5 ? C21 YJ0 1210 A 1 HETATM 16 C C22 YJ0 . . . N 3 116.631 152.448 154.437 1 13.5 ? C22 YJ0 1210 A 1 HETATM 17 C C23 YJ0 . . . N 3 115.298 151.902 154.921 1 13.5 ? C23 YJ0 1210 A 1 HETATM 18 C C24 YJ0 . . . N 3 114.227 151.978 153.843 1 13.5 ? C24 YJ0 1210 A 1 HETATM 19 C C26 YJ0 . . . N 3 115.924 150.483 156.759 1 13.5 ? C26 YJ0 1210 A 1 HETATM 20 C C27 YJ0 . . . N 3 115.518 151.733 157.504 1 13.5 ? C27 YJ0 1210 A 1 HETATM 21 C C28 YJ0 . . . N 3 114.624 151.53 158.728 1 13.5 ? C28 YJ0 1210 A 1 HETATM 22 C C29 YJ0 . . . N 3 114.266 152.845 159.381 1 13.5 ? C29 YJ0 1210 A 1 HETATM 23 C C4 YJ0 . . . N 3 116.465 150.975 142.962 1 13.5 ? C4 YJ0 1210 A 1 HETATM 24 C C5 YJ0 . . . N 3 116.022 151.989 143.998 1 13.5 ? C5 YJ0 1210 A 1 HETATM 25 C C53 YJ0 . . . N 3 113.349 150.797 158.383 1 13.5 ? C53 YJ0 1210 A 1 HETATM 26 C C6 YJ0 . . . N 3 117.081 152.386 145.034 1 13.5 ? C6 YJ0 1210 A 1 HETATM 27 C C7 YJ0 . . . N 3 116.253 152.708 146.296 1 13.5 ? C7 YJ0 1210 A 1 HETATM 28 C C77 YJ0 . . . N 3 116.95 150.457 152.288 1 13.5 ? C77 YJ0 1210 A 1 HETATM 29 C C78 YJ0 . . . N 3 117.411 150.775 147.508 1 13.5 ? C78 YJ0 1210 A 1 HETATM 30 C C79 YJ0 . . . N 3 118.027 153.499 144.598 1 13.5 ? C79 YJ0 1210 A 1 HETATM 31 C C8 YJ0 . . . N 3 114.846 152.134 145.994 1 13.5 ? C8 YJ0 1210 A 1 HETATM 32 C C81 YJ0 . . . N 3 115.253 153.019 141.992 1 13.5 ? C81 YJ0 1210 A 1 HETATM 33 O O25 YJ0 . . . N 3 115.475 150.57 155.407 1 13.5 ? O25 YJ0 1210 A 1 HETATM 34 O O80 YJ0 . . . N 3 115.573 153.179 143.376 1 13.5 ? O80 YJ0 1210 A 1 HETATM 35 O O9 YJ0 . . . N 3 114.975 151.416 144.762 1 13.5 ? O9 YJ0 1210 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #