data_8T1D # _model_server_result.job_id OSFgkYL51Ehtbw0RmaWBpA _model_server_result.datetime_utc '2024-11-21 14:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 8T1D # _exptl.entry_id 8T1D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 672.931 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T1D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 639 A CYS 639 1_555 A SG CYS 660 A CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 639 B CYS 639 1_555 B SG CYS 660 B CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 639 C CYS 639 1_555 C SG CYS 660 C CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 639 D CYS 639 1_555 D SG CYS 660 D CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C40 H64 O8' _chem_comp.formula_weight 672.931 _chem_comp.id XS9 _chem_comp.mon_nstd_flag . _chem_comp.name '(1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C23 XS9 sing 374 n n O25 C24 XS9 doub 375 n n O11 C10 XS9 doub 376 n n C09 C10 XS9 sing 377 n n C10 O12 XS9 sing 378 n n C23 C24 XS9 sing 379 n n C23 C22 XS9 doub 380 n n C24 C20 XS9 sing 381 n n C33 C32 XS9 sing 382 n n O12 C13 XS9 sing 383 n n C22 C21 XS9 sing 384 n n C19 C20 XS9 sing 385 n n C19 C18 XS9 sing 386 n n C20 O27 XS9 sing 387 n n C20 C21 XS9 sing 388 n n C32 C34 XS9 sing 389 n n C32 C31 XS9 sing 390 n n C32 C30 XS9 sing 391 n n C21 C15 XS9 sing 392 n n C13 C31 XS9 sing 393 n n C13 C14 XS9 sing 394 n n C31 O35 XS9 sing 395 n n C31 C30 XS9 sing 396 n n C18 C28 XS9 sing 397 n n C18 C17 XS9 doub 398 n n C16 C30 XS9 sing 399 n n C16 C17 XS9 sing 400 n n C16 C15 XS9 sing 401 n n O29 C28 XS9 sing 402 n n O35 C36 XS9 sing 403 n n C15 C14 XS9 sing 404 n n C15 O47 XS9 sing 405 n n C14 C48 XS9 sing 406 n n C36 O37 XS9 doub 407 n n C36 C38 XS9 sing 408 n n C09 H1 XS9 sing 409 n n C09 H2 XS9 sing 410 n n C13 H131 XS9 sing 411 n n C14 H141 XS9 sing 412 n n C16 H161 XS9 sing 413 n n C17 H171 XS9 sing 414 n n C19 H191 XS9 sing 415 n n C19 H192 XS9 sing 416 n n C21 H211 XS9 sing 417 n n C22 H221 XS9 sing 418 n n C26 H262 XS9 sing 419 n n C26 H261 XS9 sing 420 n n C26 H263 XS9 sing 421 n n O27 H271 XS9 sing 422 n n C28 H281 XS9 sing 423 n n C28 H282 XS9 sing 424 n n O29 H291 XS9 sing 425 n n C30 H301 XS9 sing 426 n n C33 H332 XS9 sing 427 n n C33 H331 XS9 sing 428 n n C33 H333 XS9 sing 429 n n C34 H342 XS9 sing 430 n n C34 H341 XS9 sing 431 n n C34 H343 XS9 sing 432 n n C38 H8 XS9 sing 433 n n C38 H9 XS9 sing 434 n n O47 H471 XS9 sing 435 n n C48 H482 XS9 sing 436 n n C48 H481 XS9 sing 437 n n C48 H483 XS9 sing 438 n n C09 C08 XS9 sing 439 n n C08 C07 XS9 sing 440 n n C07 C06 XS9 sing 441 n n C06 C05 XS9 sing 442 n n C05 C04 XS9 sing 443 n n C04 C03 XS9 sing 444 n n C03 C02 XS9 sing 445 n n C02 C01 XS9 sing 446 n n C08 H3 XS9 sing 447 n n C08 H4 XS9 sing 448 n n C07 H5 XS9 sing 449 n n C07 H6 XS9 sing 450 n n C06 H7 XS9 sing 451 n n C06 H11 XS9 sing 452 n n C05 H12 XS9 sing 453 n n C05 H13 XS9 sing 454 n n C04 H14 XS9 sing 455 n n C04 H15 XS9 sing 456 n n C03 H16 XS9 sing 457 n n C03 H17 XS9 sing 458 n n C02 H18 XS9 sing 459 n n C02 H19 XS9 sing 460 n n C01 H20 XS9 sing 461 n n C01 H21 XS9 sing 462 n n C01 H22 XS9 sing 463 n n C38 C39 XS9 sing 464 n n C39 C40 XS9 sing 465 n n C40 C41 XS9 sing 466 n n C41 C42 XS9 sing 467 n n C42 C43 XS9 sing 468 n n C43 C44 XS9 sing 469 n n C44 C45 XS9 sing 470 n n C45 C46 XS9 sing 471 n n C39 H10 XS9 sing 472 n n C39 H23 XS9 sing 473 n n C40 H24 XS9 sing 474 n n C40 H25 XS9 sing 475 n n C41 H26 XS9 sing 476 n n C41 H27 XS9 sing 477 n n C42 H28 XS9 sing 478 n n C42 H29 XS9 sing 479 n n C43 H30 XS9 sing 480 n n C43 H31 XS9 sing 481 n n C44 H32 XS9 sing 482 n n C44 H33 XS9 sing 483 n n C45 H34 XS9 sing 484 n n C45 H35 XS9 sing 485 n n C46 H36 XS9 sing 486 n n C46 H37 XS9 sing 487 n n C46 H38 XS9 sing 488 n n # _atom_sites.entry_id 8T1D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XS9 A 1 1201 1201 XS9 XS9 . F 2 XS9 B 1 1201 1201 XS9 XS9 . G 2 XS9 C 1 1201 1201 XS9 XS9 . H 2 XS9 D 1 1201 1201 XS9 XS9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C09 XS9 . . . E 2 161.512 150.442 127.072 1 51.89 ? C09 XS9 1201 A 1 HETATM 2 C C10 XS9 . . . E 2 160.908 149.519 126.053 1 51.89 ? C10 XS9 1201 A 1 HETATM 3 O O11 XS9 . . . E 2 159.932 149.764 125.395 1 51.89 ? O11 XS9 1201 A 1 HETATM 4 O O12 XS9 . . . E 2 161.598 148.369 125.969 1 51.89 ? O12 XS9 1201 A 1 HETATM 5 C C13 XS9 . . . E 2 161.131 147.36 125.039 1 51.89 ? C13 XS9 1201 A 1 HETATM 6 C C14 XS9 . . . E 2 160.588 146.174 125.8 1 51.89 ? C14 XS9 1201 A 1 HETATM 7 C C15 XS9 . . . E 2 160.227 145.098 124.804 1 51.89 ? C15 XS9 1201 A 1 HETATM 8 C C16 XS9 . . . E 2 161.584 144.488 124.348 1 51.89 ? C16 XS9 1201 A 1 HETATM 9 C C17 XS9 . . . E 2 161.427 143.369 123.353 1 51.89 ? C17 XS9 1201 A 1 HETATM 10 C C18 XS9 . . . E 2 161.19 142.106 123.694 1 51.89 ? C18 XS9 1201 A 1 HETATM 11 C C19 XS9 . . . E 2 160.231 141.823 124.817 1 51.89 ? C19 XS9 1201 A 1 HETATM 12 C C20 XS9 . . . E 2 158.985 142.712 124.735 1 51.89 ? C20 XS9 1201 A 1 HETATM 13 C C21 XS9 . . . E 2 159.131 144.136 125.326 1 51.89 ? C21 XS9 1201 A 1 HETATM 14 C C22 XS9 . . . E 2 159.026 143.79 126.778 1 51.89 ? C22 XS9 1201 A 1 HETATM 15 C C23 XS9 . . . E 2 157.955 143.015 126.795 1 51.89 ? C23 XS9 1201 A 1 HETATM 16 C C24 XS9 . . . E 2 158.044 142.096 125.672 1 51.89 ? C24 XS9 1201 A 1 HETATM 17 O O25 XS9 . . . E 2 157.511 141.014 125.503 1 51.89 ? O25 XS9 1201 A 1 HETATM 18 C C26 XS9 . . . E 2 156.769 143.055 127.708 1 51.89 ? C26 XS9 1201 A 1 HETATM 19 O O27 XS9 . . . E 2 158.528 142.797 123.389 1 51.89 ? O27 XS9 1201 A 1 HETATM 20 C C28 XS9 . . . E 2 161.819 140.911 123.032 1 51.89 ? C28 XS9 1201 A 1 HETATM 21 O O29 XS9 . . . E 2 161.533 139.718 123.739 1 51.89 ? O29 XS9 1201 A 1 HETATM 22 C C30 XS9 . . . E 2 162.572 145.538 123.782 1 51.89 ? C30 XS9 1201 A 1 HETATM 23 C C31 XS9 . . . E 2 162.284 146.981 124.108 1 51.89 ? C31 XS9 1201 A 1 HETATM 24 C C32 XS9 . . . E 2 163.619 146.353 124.519 1 51.89 ? C32 XS9 1201 A 1 HETATM 25 C C33 XS9 . . . E 2 163.896 146.031 125.99 1 51.89 ? C33 XS9 1201 A 1 HETATM 26 C C34 XS9 . . . E 2 164.886 146.756 123.759 1 51.89 ? C34 XS9 1201 A 1 HETATM 27 O O35 XS9 . . . E 2 162.513 148.099 123.216 1 51.89 ? O35 XS9 1201 A 1 HETATM 28 C C36 XS9 . . . E 2 162.005 148.299 121.991 1 51.89 ? C36 XS9 1201 A 1 HETATM 29 O O37 XS9 . . . E 2 162.061 149.336 121.389 1 51.89 ? O37 XS9 1201 A 1 HETATM 30 C C38 XS9 . . . E 2 161.32 147.068 121.481 1 51.89 ? C38 XS9 1201 A 1 HETATM 31 O O47 XS9 . . . E 2 159.564 145.692 123.689 1 51.89 ? O47 XS9 1201 A 1 HETATM 32 C C48 XS9 . . . E 2 159.492 146.724 126.71 1 51.89 ? C48 XS9 1201 A 1 HETATM 33 C C08 XS9 . . . E 2 162.152 151.681 126.462 1 51.89 ? C08 XS9 1201 A 1 HETATM 34 C C07 XS9 . . . E 2 161.571 152.977 127.009 1 51.89 ? C07 XS9 1201 A 1 HETATM 35 C C06 XS9 . . . E 2 162.556 154.136 127.043 1 51.89 ? C06 XS9 1201 A 1 HETATM 36 C C05 XS9 . . . E 2 162.154 155.263 127.98 1 51.89 ? C05 XS9 1201 A 1 HETATM 37 C C04 XS9 . . . E 2 160.653 155.462 128.1 1 51.89 ? C04 XS9 1201 A 1 HETATM 38 C C03 XS9 . . . E 2 160.239 156.354 129.261 1 51.89 ? C03 XS9 1201 A 1 HETATM 39 C C02 XS9 . . . E 2 158.784 156.204 129.666 1 51.89 ? C02 XS9 1201 A 1 HETATM 40 C C01 XS9 . . . E 2 158.142 157.51 130.059 1 51.89 ? C01 XS9 1201 A 1 HETATM 41 C C39 XS9 . . . E 2 159.874 147.289 121.083 1 51.89 ? C39 XS9 1201 A 1 HETATM 42 C C40 XS9 . . . E 2 159.284 146.08 120.394 1 51.89 ? C40 XS9 1201 A 1 HETATM 43 C C41 XS9 . . . E 2 159.235 146.225 118.891 1 51.89 ? C41 XS9 1201 A 1 HETATM 44 C C42 XS9 . . . E 2 158.91 147.628 118.431 1 51.89 ? C42 XS9 1201 A 1 HETATM 45 C C43 XS9 . . . E 2 159.947 148.228 117.504 1 51.89 ? C43 XS9 1201 A 1 HETATM 46 C C44 XS9 . . . E 2 161.337 148.31 118.109 1 51.89 ? C44 XS9 1201 A 1 HETATM 47 C C45 XS9 . . . E 2 161.811 149.729 118.351 1 51.89 ? C45 XS9 1201 A 1 HETATM 48 C C46 XS9 . . . E 2 160.699 150.653 118.798 1 51.89 ? C46 XS9 1201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #