data_8T1D
#
_model_server_result.job_id            9zZ3wnJ_HVZm2hYa9-kvPg 
_model_server_result.datetime_utc      '2024-11-21 13:39:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t1d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1201}' 
#
_entry.id    8T1D 
#
_exptl.entry_id    8T1D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              672.931 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T1D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T1D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 639 A CYS 639 1_555 A SG CYS 660 A CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 639 B CYS 639 1_555 B SG CYS 660 B CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 C SG CYS 639 C CYS 639 1_555 C SG CYS 660 C CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 D SG CYS 639 D CYS 639 1_555 D SG CYS 660 D CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C40 H64 O8' 
_chem_comp.formula_weight    672.931 
_chem_comp.id                XS9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C23 XS9 sing 374 n n 
O25 C24 XS9 doub 375 n n 
O11 C10 XS9 doub 376 n n 
C09 C10 XS9 sing 377 n n 
C10 O12 XS9 sing 378 n n 
C23 C24 XS9 sing 379 n n 
C23 C22 XS9 doub 380 n n 
C24 C20 XS9 sing 381 n n 
C33 C32 XS9 sing 382 n n 
O12 C13 XS9 sing 383 n n 
C22 C21 XS9 sing 384 n n 
C19 C20 XS9 sing 385 n n 
C19 C18 XS9 sing 386 n n 
C20 O27 XS9 sing 387 n n 
C20 C21 XS9 sing 388 n n 
C32 C34 XS9 sing 389 n n 
C32 C31 XS9 sing 390 n n 
C32 C30 XS9 sing 391 n n 
C21 C15 XS9 sing 392 n n 
C13 C31 XS9 sing 393 n n 
C13 C14 XS9 sing 394 n n 
C31 O35 XS9 sing 395 n n 
C31 C30 XS9 sing 396 n n 
C18 C28 XS9 sing 397 n n 
C18 C17 XS9 doub 398 n n 
C16 C30 XS9 sing 399 n n 
C16 C17 XS9 sing 400 n n 
C16 C15 XS9 sing 401 n n 
O29 C28 XS9 sing 402 n n 
O35 C36 XS9 sing 403 n n 
C15 C14 XS9 sing 404 n n 
C15 O47 XS9 sing 405 n n 
C14 C48 XS9 sing 406 n n 
C36 O37 XS9 doub 407 n n 
C36 C38 XS9 sing 408 n n 
C09 H1 XS9 sing 409 n n 
C09 H2 XS9 sing 410 n n 
C13 H131 XS9 sing 411 n n 
C14 H141 XS9 sing 412 n n 
C16 H161 XS9 sing 413 n n 
C17 H171 XS9 sing 414 n n 
C19 H191 XS9 sing 415 n n 
C19 H192 XS9 sing 416 n n 
C21 H211 XS9 sing 417 n n 
C22 H221 XS9 sing 418 n n 
C26 H262 XS9 sing 419 n n 
C26 H261 XS9 sing 420 n n 
C26 H263 XS9 sing 421 n n 
O27 H271 XS9 sing 422 n n 
C28 H281 XS9 sing 423 n n 
C28 H282 XS9 sing 424 n n 
O29 H291 XS9 sing 425 n n 
C30 H301 XS9 sing 426 n n 
C33 H332 XS9 sing 427 n n 
C33 H331 XS9 sing 428 n n 
C33 H333 XS9 sing 429 n n 
C34 H342 XS9 sing 430 n n 
C34 H341 XS9 sing 431 n n 
C34 H343 XS9 sing 432 n n 
C38 H8 XS9 sing 433 n n 
C38 H9 XS9 sing 434 n n 
O47 H471 XS9 sing 435 n n 
C48 H482 XS9 sing 436 n n 
C48 H481 XS9 sing 437 n n 
C48 H483 XS9 sing 438 n n 
C09 C08 XS9 sing 439 n n 
C08 C07 XS9 sing 440 n n 
C07 C06 XS9 sing 441 n n 
C06 C05 XS9 sing 442 n n 
C05 C04 XS9 sing 443 n n 
C04 C03 XS9 sing 444 n n 
C03 C02 XS9 sing 445 n n 
C02 C01 XS9 sing 446 n n 
C08 H3 XS9 sing 447 n n 
C08 H4 XS9 sing 448 n n 
C07 H5 XS9 sing 449 n n 
C07 H6 XS9 sing 450 n n 
C06 H7 XS9 sing 451 n n 
C06 H11 XS9 sing 452 n n 
C05 H12 XS9 sing 453 n n 
C05 H13 XS9 sing 454 n n 
C04 H14 XS9 sing 455 n n 
C04 H15 XS9 sing 456 n n 
C03 H16 XS9 sing 457 n n 
C03 H17 XS9 sing 458 n n 
C02 H18 XS9 sing 459 n n 
C02 H19 XS9 sing 460 n n 
C01 H20 XS9 sing 461 n n 
C01 H21 XS9 sing 462 n n 
C01 H22 XS9 sing 463 n n 
C38 C39 XS9 sing 464 n n 
C39 C40 XS9 sing 465 n n 
C40 C41 XS9 sing 466 n n 
C41 C42 XS9 sing 467 n n 
C42 C43 XS9 sing 468 n n 
C43 C44 XS9 sing 469 n n 
C44 C45 XS9 sing 470 n n 
C45 C46 XS9 sing 471 n n 
C39 H10 XS9 sing 472 n n 
C39 H23 XS9 sing 473 n n 
C40 H24 XS9 sing 474 n n 
C40 H25 XS9 sing 475 n n 
C41 H26 XS9 sing 476 n n 
C41 H27 XS9 sing 477 n n 
C42 H28 XS9 sing 478 n n 
C42 H29 XS9 sing 479 n n 
C43 H30 XS9 sing 480 n n 
C43 H31 XS9 sing 481 n n 
C44 H32 XS9 sing 482 n n 
C44 H33 XS9 sing 483 n n 
C45 H34 XS9 sing 484 n n 
C45 H35 XS9 sing 485 n n 
C46 H36 XS9 sing 486 n n 
C46 H37 XS9 sing 487 n n 
C46 H38 XS9 sing 488 n n 
#
_atom_sites.entry_id                     8T1D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XS9 A 1 1201 1201 XS9 XS9 . 
F 2 XS9 B 1 1201 1201 XS9 XS9 . 
G 2 XS9 C 1 1201 1201 XS9 XS9 . 
H 2 XS9 D 1 1201 1201 XS9 XS9 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C09 XS9 . . . H 2 154.96 92.776 126.881 1 64.19 ? C09 XS9 1201 D 1 
HETATM 2 C C10 XS9 . . . H 2 153.97 93.677 126.206 1 64.19 ? C10 XS9 1201 D 1 
HETATM 3 O O11 XS9 . . . H 2 154.214 94.778 125.792 1 64.19 ? O11 XS9 1201 D 1 
HETATM 4 O O12 XS9 . . . H 2 152.768 93.091 126.108 1 64.19 ? O12 XS9 1201 D 1 
HETATM 5 C C13 XS9 . . . H 2 151.681 93.857 125.535 1 64.19 ? C13 XS9 1201 D 1 
HETATM 6 C C14 XS9 . . . H 2 150.377 93.454 126.189 1 64.19 ? C14 XS9 1201 D 1 
HETATM 7 C C15 XS9 . . . H 2 149.185 93.984 125.47 1 64.19 ? C15 XS9 1201 D 1 
HETATM 8 C C16 XS9 . . . H 2 149.124 93.302 124.079 1 64.19 ? C16 XS9 1201 D 1 
HETATM 9 C C17 XS9 . . . H 2 148.019 93.881 123.238 1 64.19 ? C17 XS9 1201 D 1 
HETATM 10 C C18 XS9 . . . H 2 146.761 93.954 123.66 1 64.19 ? C18 XS9 1201 D 1 
HETATM 11 C C19 XS9 . . . H 2 146.341 95.006 124.65 1 64.19 ? C19 XS9 1201 D 1 
HETATM 12 C C20 XS9 . . . H 2 146.691 94.68 126.107 1 64.19 ? C20 XS9 1201 D 1 
HETATM 13 C C21 XS9 . . . H 2 147.926 93.78 126.348 1 64.19 ? C21 XS9 1201 D 1 
HETATM 14 C C22 XS9 . . . H 2 147.316 92.428 126.391 1 64.19 ? C22 XS9 1201 D 1 
HETATM 15 C C23 XS9 . . . H 2 146.001 92.466 126.551 1 64.19 ? C23 XS9 1201 D 1 
HETATM 16 C C24 XS9 . . . H 2 145.587 93.861 126.622 1 64.19 ? C24 XS9 1201 D 1 
HETATM 17 O O25 XS9 . . . H 2 144.528 94.31 127.019 1 64.19 ? O25 XS9 1201 D 1 
HETATM 18 C C26 XS9 . . . H 2 145.012 91.342 126.642 1 64.19 ? C26 XS9 1201 D 1 
HETATM 19 O O27 XS9 . . . H 2 146.869 95.877 126.853 1 64.19 ? O27 XS9 1201 D 1 
HETATM 20 C C28 XS9 . . . H 2 145.731 92.962 123.194 1 64.19 ? C28 XS9 1201 D 1 
HETATM 21 O O29 XS9 . . . H 2 146.064 91.648 123.596 1 64.19 ? O29 XS9 1201 D 1 
HETATM 22 C C30 XS9 . . . H 2 150.428 93.363 123.278 1 64.19 ? C30 XS9 1201 D 1 
HETATM 23 C C31 XS9 . . . H 2 151.701 93.645 124.021 1 64.19 ? C31 XS9 1201 D 1 
HETATM 24 C C32 XS9 . . . H 2 151.522 92.32 123.29 1 64.19 ? C32 XS9 1201 D 1 
HETATM 25 C C33 XS9 . . . H 2 151.308 91.026 124.082 1 64.19 ? C33 XS9 1201 D 1 
HETATM 26 C C34 XS9 . . . H 2 152.278 92.091 121.98 1 64.19 ? C34 XS9 1201 D 1 
HETATM 27 O O35 XS9 . . . H 2 152.813 94.339 123.408 1 64.19 ? O35 XS9 1201 D 1 
HETATM 28 C C36 XS9 . . . H 2 152.872 95.638 123.09 1 64.19 ? C36 XS9 1201 D 1 
HETATM 29 O O37 XS9 . . . H 2 153.833 96.184 122.622 1 64.19 ? O37 XS9 1201 D 1 
HETATM 30 C C38 XS9 . . . H 2 151.577 96.328 123.4 1 64.19 ? C38 XS9 1201 D 1 
HETATM 31 O O47 XS9 . . . H 2 149.346 95.394 125.306 1 64.19 ? O47 XS9 1201 D 1 
HETATM 32 C C48 XS9 . . . H 2 150.433 93.936 127.634 1 64.19 ? C48 XS9 1201 D 1 
HETATM 33 C C08 XS9 . . . H 2 156.253 93.488 127.259 1 64.19 ? C08 XS9 1201 D 1 
HETATM 34 C C07 XS9 . . . H 2 156.059 94.537 128.338 1 64.19 ? C07 XS9 1201 D 1 
HETATM 35 C C06 XS9 . . . H 2 157.253 95.452 128.522 1 64.19 ? C06 XS9 1201 D 1 
HETATM 36 C C05 XS9 . . . H 2 158.258 94.945 129.538 1 64.19 ? C05 XS9 1201 D 1 
HETATM 37 C C04 XS9 . . . H 2 158.286 95.749 130.823 1 64.19 ? C04 XS9 1201 D 1 
HETATM 38 C C03 XS9 . . . H 2 159.035 97.06 130.706 1 64.19 ? C03 XS9 1201 D 1 
HETATM 39 C C02 XS9 . . . H 2 158.916 97.939 131.929 1 64.19 ? C02 XS9 1201 D 1 
HETATM 40 C C01 XS9 . . . H 2 160.152 97.911 132.783 1 64.19 ? C01 XS9 1201 D 1 
HETATM 41 C C39 XS9 . . . H 2 150.825 96.764 122.152 1 64.19 ? C39 XS9 1201 D 1 
HETATM 42 C C40 XS9 . . . H 2 150.798 95.704 121.062 1 64.19 ? C40 XS9 1201 D 1 
HETATM 43 C C41 XS9 . . . H 2 151.827 95.903 119.965 1 64.19 ? C41 XS9 1201 D 1 
HETATM 44 C C42 XS9 . . . H 2 152.373 94.609 119.394 1 64.19 ? C42 XS9 1201 D 1 
HETATM 45 C C43 XS9 . . . H 2 153.889 94.52 119.43 1 64.19 ? C43 XS9 1201 D 1 
HETATM 46 C C44 XS9 . . . H 2 154.456 93.325 118.683 1 64.19 ? C44 XS9 1201 D 1 
HETATM 47 C C45 XS9 . . . H 2 155.261 93.684 117.444 1 64.19 ? C45 XS9 1201 D 1 
HETATM 48 C C46 XS9 . . . H 2 155.505 95.165 117.298 1 64.19 ? C46 XS9 1201 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#