data_8T1P # _model_server_result.job_id uaq3nQ9koDfEe8pEuhAfgQ _model_server_result.datetime_utc '2024-12-21 16:58:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8T1P # _exptl.entry_id 8T1P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T1P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 400 C THR 378 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 A OE1 GLN 441 C GLN 419 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 C O3G ATP . C ATP 601 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc4 C O2B ATP . C ATP 601 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 B OG SER 470 D SER 470 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 O O3B AOV . D AOV 701 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 121 n n PG O2G ATP sing 122 n n PG O3G ATP sing 123 n n PG O3B ATP sing 124 n n O2G HOG2 ATP sing 125 n n O3G HOG3 ATP sing 126 n n PB O1B ATP doub 127 n n PB O2B ATP sing 128 n n PB O3B ATP sing 129 n n PB O3A ATP sing 130 n n O2B HOB2 ATP sing 131 n n PA O1A ATP doub 132 n n PA O2A ATP sing 133 n n PA O3A ATP sing 134 n n PA O5' ATP sing 135 n n O2A HOA2 ATP sing 136 n n O5' C5' ATP sing 137 n n C5' C4' ATP sing 138 n n C5' "H5'1" ATP sing 139 n n C5' "H5'2" ATP sing 140 n n C4' O4' ATP sing 141 n n C4' C3' ATP sing 142 n n C4' H4' ATP sing 143 n n O4' C1' ATP sing 144 n n C3' O3' ATP sing 145 n n C3' C2' ATP sing 146 n n C3' H3' ATP sing 147 n n O3' HO3' ATP sing 148 n n C2' O2' ATP sing 149 n n C2' C1' ATP sing 150 n n C2' H2' ATP sing 151 n n O2' HO2' ATP sing 152 n n C1' N9 ATP sing 153 n n C1' H1' ATP sing 154 n n N9 C8 ATP sing 155 n y N9 C4 ATP sing 156 n y C8 N7 ATP doub 157 n y C8 H8 ATP sing 158 n n N7 C5 ATP sing 159 n y C5 C6 ATP sing 160 n y C5 C4 ATP doub 161 n y C6 N6 ATP sing 162 n n C6 N1 ATP doub 163 n y N6 HN61 ATP sing 164 n n N6 HN62 ATP sing 165 n n N1 C2 ATP sing 166 n y C2 N3 ATP doub 167 n y C2 H2 ATP sing 168 n n N3 C4 ATP sing 169 n y # _atom_sites.entry_id 8T1P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP C 1 601 2 ATP ATP . D 4 MG C 1 602 2 MG MG . E 5 POV C 1 603 1 POV POV . F 5 POV C 1 604 3 POV POV . G 5 POV C 1 605 5 POV POV . H 5 POV C 1 606 6 POV POV . I 5 POV C 1 607 7 POV POV . J 5 POV C 1 608 8 POV POV . K 5 POV C 1 609 9 POV POV . L 5 POV C 1 610 12 POV POV . M 5 POV C 1 611 13 POV POV . N 5 POV C 1 612 16 POV POV . O 6 AOV D 1 701 1 AOV AOV . P 4 MG D 1 702 1 MG MG . Q 5 POV D 1 703 2 POV POV . R 5 POV D 1 704 4 POV POV . S 5 POV D 1 705 10 POV POV . T 5 POV D 1 706 11 POV POV . U 5 POV D 1 707 14 POV POV . V 5 POV D 1 708 15 POV POV . W 5 POV D 1 709 17 POV POV . X 5 POV D 1 710 18 POV POV . Y 5 POV D 1 711 19 POV POV . Z 5 POV D 1 712 20 POV POV . AA 5 POV D 1 713 21 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 164.354 156.828 104.662 1 43.95 ? PG ATP 601 C 1 HETATM 2 O O1G ATP . . . C 3 164.614 156.89 103.221 1 40.39 ? O1G ATP 601 C 1 HETATM 3 O O2G ATP . . . C 3 164.075 155.508 105.102 1 39.13 ? O2G ATP 601 C 1 HETATM 4 O O3G ATP . . . C 3 163.325 157.762 105.09 1 41.66 ? O3G ATP 601 C 1 HETATM 5 P PB ATP . . . C 3 166.822 158.228 105.261 1 29.39 ? PB ATP 601 C 1 HETATM 6 O O1B ATP . . . C 3 167.289 158.179 103.876 1 44.79 ? O1B ATP 601 C 1 HETATM 7 O O2B ATP . . . C 3 166.137 159.411 105.78 1 37.48 ? O2B ATP 601 C 1 HETATM 8 O O3B ATP . . . C 3 165.724 157.095 105.398 1 46.45 ? O3B ATP 601 C 1 HETATM 9 P PA ATP . . . C 3 168.387 158.276 107.72 1 21.2 ? PA ATP 601 C 1 HETATM 10 O O1A ATP . . . C 3 169.175 159.485 107.494 1 49.54 ? O1A ATP 601 C 1 HETATM 11 O O2A ATP . . . C 3 167.22 158.362 108.624 1 28.22 ? O2A ATP 601 C 1 HETATM 12 O O3A ATP . . . C 3 167.956 157.774 106.28 1 35.6 ? O3A ATP 601 C 1 HETATM 13 O O5' ATP . . . C 3 169.364 157.138 108.233 1 48.08 ? O5' ATP 601 C 1 HETATM 14 C C5' ATP . . . C 3 170.747 157.042 107.84 1 38.38 ? C5' ATP 601 C 1 HETATM 15 C C4' ATP . . . C 3 171.353 155.85 108.533 1 32.93 ? C4' ATP 601 C 1 HETATM 16 O O4' ATP . . . C 3 171.508 156.151 109.941 1 35.38 ? O4' ATP 601 C 1 HETATM 17 C C3' ATP . . . C 3 170.512 154.572 108.5 1 42.92 ? C3' ATP 601 C 1 HETATM 18 O O3' ATP . . . C 3 171.314 153.406 108.575 1 57.34 ? O3' ATP 601 C 1 HETATM 19 C C2' ATP . . . C 3 169.682 154.691 109.774 1 39.88 ? C2' ATP 601 C 1 HETATM 20 O O2' ATP . . . C 3 169.232 153.433 110.213 1 51.27 ? O2' ATP 601 C 1 HETATM 21 C C1' ATP . . . C 3 170.695 155.313 110.726 1 30.78 ? C1' ATP 601 C 1 HETATM 22 N N9 ATP . . . C 3 170.095 156.119 111.781 1 38.3 ? N9 ATP 601 C 1 HETATM 23 C C8 ATP . . . C 3 168.971 156.88 111.693 1 43.04 ? C8 ATP 601 C 1 HETATM 24 N N7 ATP . . . C 3 168.662 157.472 112.818 1 39.42 ? N7 ATP 601 C 1 HETATM 25 C C5 ATP . . . C 3 169.641 157.059 113.704 1 38.13 ? C5 ATP 601 C 1 HETATM 26 C C6 ATP . . . C 3 169.874 157.347 115.058 1 38.71 ? C6 ATP 601 C 1 HETATM 27 N N6 ATP . . . C 3 169.096 158.142 115.782 1 41.65 ? N6 ATP 601 C 1 HETATM 28 N N1 ATP . . . C 3 170.948 156.767 115.64 1 42.93 ? N1 ATP 601 C 1 HETATM 29 C C2 ATP . . . C 3 171.717 155.961 114.9 1 45.05 ? C2 ATP 601 C 1 HETATM 30 N N3 ATP . . . C 3 171.598 155.625 113.62 1 45.03 ? N3 ATP 601 C 1 HETATM 31 C C4 ATP . . . C 3 170.528 156.219 113.073 1 44.76 ? C4 ATP 601 C 1 HETATM 32 H "H5'1" ATP . . . C 3 170.828 156.934 106.759 1 38.38 ? "H5'1" ATP 601 C 1 HETATM 33 H "H5'2" ATP . . . C 3 171.282 157.951 108.11 1 38.38 ? "H5'2" ATP 601 C 1 HETATM 34 H H4' ATP . . . C 3 172.282 155.67 107.994 1 32.93 ? H4' ATP 601 C 1 HETATM 35 H H3' ATP . . . C 3 169.935 154.481 107.581 1 42.92 ? H3' ATP 601 C 1 HETATM 36 H HO3' ATP . . . C 3 170.746 152.62 108.551 1 42.92 ? HO3' ATP 601 C 1 HETATM 37 H H2' ATP . . . C 3 168.767 155.272 109.669 1 39.88 ? H2' ATP 601 C 1 HETATM 38 H HO2' ATP . . . C 3 168.709 153.541 111.023 1 39.88 ? HO2' ATP 601 C 1 HETATM 39 H H1' ATP . . . C 3 171.236 154.51 111.224 1 30.78 ? H1' ATP 601 C 1 HETATM 40 H H8 ATP . . . C 3 168.392 156.985 110.785 1 43.04 ? H8 ATP 601 C 1 HETATM 41 H HN61 ATP . . . C 3 169.315 158.314 116.759 1 41.65 ? HN61 ATP 601 C 1 HETATM 42 H HN62 ATP . . . C 3 168.282 158.579 115.359 1 41.65 ? HN62 ATP 601 C 1 HETATM 43 H H2 ATP . . . C 3 172.557 155.519 115.418 1 45.05 ? H2 ATP 601 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #