data_8T1P # _model_server_result.job_id s-Wyz09OFWZtFoqYZ8alYQ _model_server_result.datetime_utc '2024-11-04 22:32:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":704}' # _entry.id 8T1P # _exptl.entry_id 8T1P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T1P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 400 C THR 378 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 A OE1 GLN 441 C GLN 419 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 C O3G ATP . C ATP 601 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc4 C O2B ATP . C ATP 601 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 B OG SER 470 D SER 470 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 O O3B AOV . D AOV 701 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 358 n n N C13 POV sing 359 n n N C14 POV sing 360 n n N C15 POV sing 361 n n P O11 POV sing 362 n n P O12 POV sing 363 n n P O13 POV sing 364 n n P O14 POV doub 365 n n C1 C2 POV sing 366 n n C1 O11 POV sing 367 n n C1 H1 POV sing 368 n n C1 H1A POV sing 369 n n C2 C3 POV sing 370 n n C2 O21 POV sing 371 n n C2 H2 POV sing 372 n n C3 O31 POV sing 373 n n C3 H3 POV sing 374 n n C3 H3A POV sing 375 n n C210 C211 POV sing 376 n n C210 C29 POV doub 377 z n C210 H210 POV sing 378 n n C310 C311 POV sing 379 n n C310 C39 POV sing 380 n n C310 H310 POV sing 381 n n C310 H31A POV sing 382 n n C11 C12 POV sing 383 n n C11 O12 POV sing 384 n n C11 H11 POV sing 385 n n C11 H11A POV sing 386 n n C211 C212 POV sing 387 n n C211 H211 POV sing 388 n n C211 H21A POV sing 389 n n C311 C312 POV sing 390 n n C311 H311 POV sing 391 n n C311 H31B POV sing 392 n n C12 H12 POV sing 393 n n C12 H12A POV sing 394 n n C212 C213 POV sing 395 n n C212 H212 POV sing 396 n n C212 H21B POV sing 397 n n C312 C313 POV sing 398 n n C312 H312 POV sing 399 n n C312 H31C POV sing 400 n n C13 H13 POV sing 401 n n C13 H13A POV sing 402 n n C13 H13B POV sing 403 n n C213 C214 POV sing 404 n n C213 H213 POV sing 405 n n C213 H21C POV sing 406 n n C313 C314 POV sing 407 n n C313 H313 POV sing 408 n n C313 H31D POV sing 409 n n C14 H14 POV sing 410 n n C14 H14A POV sing 411 n n C14 H14B POV sing 412 n n C214 C215 POV sing 413 n n C214 H214 POV sing 414 n n C214 H21D POV sing 415 n n C314 C315 POV sing 416 n n C314 H314 POV sing 417 n n C314 H31E POV sing 418 n n C15 H15 POV sing 419 n n C15 H15A POV sing 420 n n C15 H15B POV sing 421 n n C215 C216 POV sing 422 n n C215 H215 POV sing 423 n n C215 H21E POV sing 424 n n C315 C316 POV sing 425 n n C315 H315 POV sing 426 n n C315 H31F POV sing 427 n n C216 C217 POV sing 428 n n C216 H216 POV sing 429 n n C216 H21F POV sing 430 n n C316 H316 POV sing 431 n n C316 H31G POV sing 432 n n C316 H31H POV sing 433 n n C217 C218 POV sing 434 n n C217 H217 POV sing 435 n n C217 H21G POV sing 436 n n C218 H218 POV sing 437 n n C218 H21H POV sing 438 n n C218 H21J POV sing 439 n n C21 O21 POV sing 440 n n C21 C22 POV sing 441 n n C21 O22 POV doub 442 n n C22 C23 POV sing 443 n n C22 H22 POV sing 444 n n C22 H22A POV sing 445 n n C23 C24 POV sing 446 n n C23 H23 POV sing 447 n n C23 H23A POV sing 448 n n C24 C25 POV sing 449 n n C24 H24 POV sing 450 n n C24 H24A POV sing 451 n n C25 C26 POV sing 452 n n C25 H25 POV sing 453 n n C25 H25A POV sing 454 n n C26 C27 POV sing 455 n n C26 H26 POV sing 456 n n C26 H26A POV sing 457 n n C27 C28 POV sing 458 n n C27 H27 POV sing 459 n n C27 H27A POV sing 460 n n C28 C29 POV sing 461 n n C28 H28 POV sing 462 n n C28 H28A POV sing 463 n n C29 H29 POV sing 464 n n C31 O31 POV sing 465 n n C31 C32 POV sing 466 n n C31 O32 POV doub 467 n n C32 C33 POV sing 468 n n C32 H32 POV sing 469 n n C32 H32A POV sing 470 n n C33 C34 POV sing 471 n n C33 H33 POV sing 472 n n C33 H33A POV sing 473 n n C34 C35 POV sing 474 n n C34 H34 POV sing 475 n n C34 H34A POV sing 476 n n C35 C36 POV sing 477 n n C35 H35 POV sing 478 n n C35 H35A POV sing 479 n n C36 C37 POV sing 480 n n C36 H36 POV sing 481 n n C36 H36A POV sing 482 n n C37 C38 POV sing 483 n n C37 H37 POV sing 484 n n C37 H37A POV sing 485 n n C38 C39 POV sing 486 n n C38 H38 POV sing 487 n n C38 H38A POV sing 488 n n C39 H39 POV sing 489 n n C39 H39A POV sing 490 n n # _atom_sites.entry_id 8T1P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP C 1 601 2 ATP ATP . D 4 MG C 1 602 2 MG MG . E 5 POV C 1 603 1 POV POV . F 5 POV C 1 604 3 POV POV . G 5 POV C 1 605 5 POV POV . H 5 POV C 1 606 6 POV POV . I 5 POV C 1 607 7 POV POV . J 5 POV C 1 608 8 POV POV . K 5 POV C 1 609 9 POV POV . L 5 POV C 1 610 12 POV POV . M 5 POV C 1 611 13 POV POV . N 5 POV C 1 612 16 POV POV . O 6 AOV D 1 701 1 AOV AOV . P 4 MG D 1 702 1 MG MG . Q 5 POV D 1 703 2 POV POV . R 5 POV D 1 704 4 POV POV . S 5 POV D 1 705 10 POV POV . T 5 POV D 1 706 11 POV POV . U 5 POV D 1 707 14 POV POV . V 5 POV D 1 708 15 POV POV . W 5 POV D 1 709 17 POV POV . X 5 POV D 1 710 18 POV POV . Y 5 POV D 1 711 19 POV POV . Z 5 POV D 1 712 20 POV POV . AA 5 POV D 1 713 21 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N POV . . . R 5 129.736 151.98 154.267 1 74.18 ? N POV 704 D 1 HETATM 2 P P POV . . . R 5 133.264 149.999 152.011 1 83.77 ? P POV 704 D 1 HETATM 3 C C1 POV . . . R 5 135.595 149.035 152.782 1 68.3 ? C1 POV 704 D 1 HETATM 4 C C2 POV . . . R 5 135.217 147.863 153.663 1 66.93 ? C2 POV 704 D 1 HETATM 5 C C210 POV . . . R 5 138.842 151.222 163.552 1 68.43 ? C210 POV 704 D 1 HETATM 6 C C11 POV . . . R 5 132.131 150.979 154.181 1 66.66 ? C11 POV 704 D 1 HETATM 7 O O11 POV . . . R 5 134.601 150.082 152.895 1 73.38 ? O11 POV 704 D 1 HETATM 8 C C211 POV . . . R 5 137.676 151.096 164.474 1 69.48 ? C211 POV 704 D 1 HETATM 9 C C12 POV . . . R 5 130.672 150.815 154.536 1 68.62 ? C12 POV 704 D 1 HETATM 10 O O12 POV . . . R 5 132.318 151.069 152.743 1 68.4 ? O12 POV 704 D 1 HETATM 11 C C212 POV . . . R 5 137.716 149.872 165.318 1 69.18 ? C212 POV 704 D 1 HETATM 12 C C13 POV . . . R 5 130.409 153.281 154.521 1 71.99 ? C13 POV 704 D 1 HETATM 13 O O13 POV . . . R 5 133.589 150.482 150.626 1 69.93 ? O13 POV 704 D 1 HETATM 14 C C213 POV . . . R 5 136.555 149.759 166.283 1 69.79 ? C213 POV 704 D 1 HETATM 15 C C14 POV . . . R 5 128.564 151.878 155.172 1 69.23 ? C14 POV 704 D 1 HETATM 16 O O14 POV . . . R 5 132.632 148.649 152.191 1 72.08 ? O14 POV 704 D 1 HETATM 17 C C214 POV . . . R 5 135.204 149.654 165.633 1 69.71 ? C214 POV 704 D 1 HETATM 18 C C15 POV . . . R 5 129.25 151.956 152.867 1 69.1 ? C15 POV 704 D 1 HETATM 19 C C215 POV . . . R 5 135.028 148.441 164.76 1 68.83 ? C215 POV 704 D 1 HETATM 20 C C21 POV . . . R 5 136.015 148.913 155.647 1 71.84 ? C21 POV 704 D 1 HETATM 21 O O21 POV . . . R 5 135.007 148.283 155.037 1 69.22 ? O21 POV 704 D 1 HETATM 22 C C22 POV . . . R 5 135.53 149.916 156.649 1 71.03 ? C22 POV 704 D 1 HETATM 23 O O22 POV . . . R 5 137.161 148.664 155.386 1 71.2 ? O22 POV 704 D 1 HETATM 24 C C23 POV . . . R 5 136.6 150.831 157.151 1 70.23 ? C23 POV 704 D 1 HETATM 25 C C24 POV . . . R 5 137.552 150.164 158.125 1 70.42 ? C24 POV 704 D 1 HETATM 26 C C25 POV . . . R 5 138.644 151.069 158.616 1 69.38 ? C25 POV 704 D 1 HETATM 27 C C26 POV . . . R 5 139.65 150.387 159.499 1 73.76 ? C26 POV 704 D 1 HETATM 28 C C27 POV . . . R 5 140.433 151.322 160.409 1 69.4 ? C27 POV 704 D 1 HETATM 29 C C28 POV . . . R 5 139.588 152.096 161.36 1 65.74 ? C28 POV 704 D 1 HETATM 30 C C29 POV . . . R 5 138.761 151.24 162.26 1 67.25 ? C29 POV 704 D 1 HETATM 31 H H29 POV . . . R 5 138.032 150.579 161.794 1 67.25 ? H29 POV 704 D 1 HETATM 32 H H1 POV . . . R 5 136.572 149.418 153.072 1 68.3 ? H1 POV 704 D 1 HETATM 33 H H1A POV . . . R 5 135.676 148.71 151.746 1 68.3 ? H1A POV 704 D 1 HETATM 34 H H210 POV . . . R 5 139.832 151.305 163.998 1 68.43 ? H210 POV 704 D 1 HETATM 35 H H11 POV . . . R 5 132.524 151.876 154.657 1 66.66 ? H11 POV 704 D 1 HETATM 36 H H11A POV . . . R 5 132.699 150.136 154.571 1 66.66 ? H11A POV 704 D 1 HETATM 37 H H211 POV . . . R 5 137.638 151.972 165.12 1 69.48 ? H211 POV 704 D 1 HETATM 38 H H21A POV . . . R 5 136.758 151.093 163.888 1 69.48 ? H21A POV 704 D 1 HETATM 39 H H12 POV . . . R 5 130.612 150.577 155.597 1 68.62 ? H12 POV 704 D 1 HETATM 40 H H12A POV . . . R 5 130.292 149.95 153.994 1 68.62 ? H12A POV 704 D 1 HETATM 41 H H22 POV . . . R 5 134.737 150.512 156.199 1 71.03 ? H22 POV 704 D 1 HETATM 42 H H212 POV . . . R 5 137.725 148.996 164.671 1 69.18 ? H212 POV 704 D 1 HETATM 43 H H22A POV . . . R 5 135.09 149.388 157.494 1 71.03 ? H22A POV 704 D 1 HETATM 44 H H21B POV . . . R 5 138.648 149.861 165.882 1 69.18 ? H21B POV 704 D 1 HETATM 45 H H13 POV . . . R 5 129.708 154.089 154.318 1 71.99 ? H13 POV 704 D 1 HETATM 46 H H13A POV . . . R 5 130.727 153.319 155.562 1 71.99 ? H13A POV 704 D 1 HETATM 47 H H13B POV . . . R 5 131.274 153.367 153.865 1 71.99 ? H13B POV 704 D 1 HETATM 48 H H23 POV . . . R 5 137.168 151.214 156.304 1 70.23 ? H23 POV 704 D 1 HETATM 49 H H213 POV . . . R 5 136.708 148.884 166.913 1 69.79 ? H213 POV 704 D 1 HETATM 50 H H23A POV . . . R 5 136.136 151.688 157.637 1 70.23 ? H23A POV 704 D 1 HETATM 51 H H21C POV . . . R 5 136.56 150.628 166.939 1 69.79 ? H21C POV 704 D 1 HETATM 52 H H14 POV . . . R 5 127.893 152.714 154.979 1 69.23 ? H14 POV 704 D 1 HETATM 53 H H14A POV . . . R 5 128.05 150.937 154.982 1 69.23 ? H14A POV 704 D 1 HETATM 54 H H14B POV . . . R 5 128.909 151.91 156.204 1 69.23 ? H14B POV 704 D 1 HETATM 55 H H24 POV . . . R 5 136.985 149.797 158.979 1 70.42 ? H24 POV 704 D 1 HETATM 56 H H214 POV . . . R 5 134.441 149.641 166.41 1 69.71 ? H214 POV 704 D 1 HETATM 57 H H24A POV . . . R 5 138.001 149.296 157.644 1 70.42 ? H24A POV 704 D 1 HETATM 58 H H21D POV . . . R 5 135.033 150.546 165.033 1 69.71 ? H21D POV 704 D 1 HETATM 59 H H15 POV . . . R 5 128.583 152.802 152.709 1 69.1 ? H15 POV 704 D 1 HETATM 60 H H15A POV . . . R 5 130.104 152.025 152.194 1 69.1 ? H15A POV 704 D 1 HETATM 61 H H15B POV . . . R 5 128.714 151.024 152.694 1 69.1 ? H15B POV 704 D 1 HETATM 62 H H25 POV . . . R 5 139.16 151.497 157.758 1 69.38 ? H25 POV 704 D 1 HETATM 63 H H25A POV . . . R 5 138.197 151.897 159.164 1 69.38 ? H25A POV 704 D 1 HETATM 64 H H26 POV . . . R 5 139.134 149.652 160.114 1 73.76 ? H26 POV 704 D 1 HETATM 65 H H26A POV . . . R 5 140.352 149.84 158.872 1 73.76 ? H26A POV 704 D 1 HETATM 66 H H27 POV . . . R 5 141.156 150.738 160.976 1 69.4 ? H27 POV 704 D 1 HETATM 67 H H27A POV . . . R 5 141 152.019 159.794 1 69.4 ? H27A POV 704 D 1 HETATM 68 H H28 POV . . . R 5 140.23 152.732 161.967 1 65.74 ? H28 POV 704 D 1 HETATM 69 H H28A POV . . . R 5 138.93 152.755 160.795 1 65.74 ? H28A POV 704 D 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 69 #