data_8T1P
#
_model_server_result.job_id            '_jDZQfZGpleW2Z9vX1zlRQ' 
_model_server_result.datetime_utc      '2024-12-21 17:20:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t1p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":710}' 
#
_entry.id    8T1P 
#
_exptl.entry_id    8T1P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T1P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T1P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
? 5 V N N 
? 5 W N N 
? 5 X N N 
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 400 C THR 378 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc2 A OE1 GLN 441 C GLN 419 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc3 C O3G ATP . C ATP 601 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc4 C O2B ATP . C ATP 601 1_555 D MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? 
metalc ? metalc5 B OG SER 470 D SER 470 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc6 O O3B AOV . D AOV 701 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 358 n n 
N C13 POV sing 359 n n 
N C14 POV sing 360 n n 
N C15 POV sing 361 n n 
P O11 POV sing 362 n n 
P O12 POV sing 363 n n 
P O13 POV sing 364 n n 
P O14 POV doub 365 n n 
C1 C2 POV sing 366 n n 
C1 O11 POV sing 367 n n 
C1 H1 POV sing 368 n n 
C1 H1A POV sing 369 n n 
C2 C3 POV sing 370 n n 
C2 O21 POV sing 371 n n 
C2 H2 POV sing 372 n n 
C3 O31 POV sing 373 n n 
C3 H3 POV sing 374 n n 
C3 H3A POV sing 375 n n 
C210 C211 POV sing 376 n n 
C210 C29 POV doub 377 z n 
C210 H210 POV sing 378 n n 
C310 C311 POV sing 379 n n 
C310 C39 POV sing 380 n n 
C310 H310 POV sing 381 n n 
C310 H31A POV sing 382 n n 
C11 C12 POV sing 383 n n 
C11 O12 POV sing 384 n n 
C11 H11 POV sing 385 n n 
C11 H11A POV sing 386 n n 
C211 C212 POV sing 387 n n 
C211 H211 POV sing 388 n n 
C211 H21A POV sing 389 n n 
C311 C312 POV sing 390 n n 
C311 H311 POV sing 391 n n 
C311 H31B POV sing 392 n n 
C12 H12 POV sing 393 n n 
C12 H12A POV sing 394 n n 
C212 C213 POV sing 395 n n 
C212 H212 POV sing 396 n n 
C212 H21B POV sing 397 n n 
C312 C313 POV sing 398 n n 
C312 H312 POV sing 399 n n 
C312 H31C POV sing 400 n n 
C13 H13 POV sing 401 n n 
C13 H13A POV sing 402 n n 
C13 H13B POV sing 403 n n 
C213 C214 POV sing 404 n n 
C213 H213 POV sing 405 n n 
C213 H21C POV sing 406 n n 
C313 C314 POV sing 407 n n 
C313 H313 POV sing 408 n n 
C313 H31D POV sing 409 n n 
C14 H14 POV sing 410 n n 
C14 H14A POV sing 411 n n 
C14 H14B POV sing 412 n n 
C214 C215 POV sing 413 n n 
C214 H214 POV sing 414 n n 
C214 H21D POV sing 415 n n 
C314 C315 POV sing 416 n n 
C314 H314 POV sing 417 n n 
C314 H31E POV sing 418 n n 
C15 H15 POV sing 419 n n 
C15 H15A POV sing 420 n n 
C15 H15B POV sing 421 n n 
C215 C216 POV sing 422 n n 
C215 H215 POV sing 423 n n 
C215 H21E POV sing 424 n n 
C315 C316 POV sing 425 n n 
C315 H315 POV sing 426 n n 
C315 H31F POV sing 427 n n 
C216 C217 POV sing 428 n n 
C216 H216 POV sing 429 n n 
C216 H21F POV sing 430 n n 
C316 H316 POV sing 431 n n 
C316 H31G POV sing 432 n n 
C316 H31H POV sing 433 n n 
C217 C218 POV sing 434 n n 
C217 H217 POV sing 435 n n 
C217 H21G POV sing 436 n n 
C218 H218 POV sing 437 n n 
C218 H21H POV sing 438 n n 
C218 H21J POV sing 439 n n 
C21 O21 POV sing 440 n n 
C21 C22 POV sing 441 n n 
C21 O22 POV doub 442 n n 
C22 C23 POV sing 443 n n 
C22 H22 POV sing 444 n n 
C22 H22A POV sing 445 n n 
C23 C24 POV sing 446 n n 
C23 H23 POV sing 447 n n 
C23 H23A POV sing 448 n n 
C24 C25 POV sing 449 n n 
C24 H24 POV sing 450 n n 
C24 H24A POV sing 451 n n 
C25 C26 POV sing 452 n n 
C25 H25 POV sing 453 n n 
C25 H25A POV sing 454 n n 
C26 C27 POV sing 455 n n 
C26 H26 POV sing 456 n n 
C26 H26A POV sing 457 n n 
C27 C28 POV sing 458 n n 
C27 H27 POV sing 459 n n 
C27 H27A POV sing 460 n n 
C28 C29 POV sing 461 n n 
C28 H28 POV sing 462 n n 
C28 H28A POV sing 463 n n 
C29 H29 POV sing 464 n n 
C31 O31 POV sing 465 n n 
C31 C32 POV sing 466 n n 
C31 O32 POV doub 467 n n 
C32 C33 POV sing 468 n n 
C32 H32 POV sing 469 n n 
C32 H32A POV sing 470 n n 
C33 C34 POV sing 471 n n 
C33 H33 POV sing 472 n n 
C33 H33A POV sing 473 n n 
C34 C35 POV sing 474 n n 
C34 H34 POV sing 475 n n 
C34 H34A POV sing 476 n n 
C35 C36 POV sing 477 n n 
C35 H35 POV sing 478 n n 
C35 H35A POV sing 479 n n 
C36 C37 POV sing 480 n n 
C36 H36 POV sing 481 n n 
C36 H36A POV sing 482 n n 
C37 C38 POV sing 483 n n 
C37 H37 POV sing 484 n n 
C37 H37A POV sing 485 n n 
C38 C39 POV sing 486 n n 
C38 H38 POV sing 487 n n 
C38 H38A POV sing 488 n n 
C39 H39 POV sing 489 n n 
C39 H39A POV sing 490 n n 
#
_atom_sites.entry_id                     8T1P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP C 1 601 2 ATP ATP . 
D 4 MG C 1 602 2 MG MG . 
E 5 POV C 1 603 1 POV POV . 
F 5 POV C 1 604 3 POV POV . 
G 5 POV C 1 605 5 POV POV . 
H 5 POV C 1 606 6 POV POV . 
I 5 POV C 1 607 7 POV POV . 
J 5 POV C 1 608 8 POV POV . 
K 5 POV C 1 609 9 POV POV . 
L 5 POV C 1 610 12 POV POV . 
M 5 POV C 1 611 13 POV POV . 
N 5 POV C 1 612 16 POV POV . 
O 6 AOV D 1 701 1 AOV AOV . 
P 4 MG D 1 702 1 MG MG . 
Q 5 POV D 1 703 2 POV POV . 
R 5 POV D 1 704 4 POV POV . 
S 5 POV D 1 705 10 POV POV . 
T 5 POV D 1 706 11 POV POV . 
U 5 POV D 1 707 14 POV POV . 
V 5 POV D 1 708 15 POV POV . 
W 5 POV D 1 709 17 POV POV . 
X 5 POV D 1 710 18 POV POV . 
Y 5 POV D 1 711 19 POV POV . 
Z 5 POV D 1 712 20 POV POV . 
AA 5 POV D 1 713 21 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C210 POV . . . X 5 140.455 157.046 177.985 1 64.42 ? C210 POV 710 D 1 
HETATM 2 C C310 POV . . . X 5 134.723 164.245 181.769 1 68.1 ? C310 POV 710 D 1 
HETATM 3 C C211 POV . . . X 5 141.271 157.534 176.831 1 67.59 ? C211 POV 710 D 1 
HETATM 4 C C21 POV . . . X 5 134.935 160.711 184.438 1 69.37 ? C21 POV 710 D 1 
HETATM 5 C C22 POV . . . X 5 135.775 159.985 183.423 1 72.99 ? C22 POV 710 D 1 
HETATM 6 C C23 POV . . . X 5 134.975 159.302 182.326 1 72.32 ? C23 POV 710 D 1 
HETATM 7 C C24 POV . . . X 5 135.887 158.628 181.31 1 70.42 ? C24 POV 710 D 1 
HETATM 8 C C25 POV . . . X 5 135.213 158.391 179.964 1 70.01 ? C25 POV 710 D 1 
HETATM 9 C C26 POV . . . X 5 136.162 157.846 178.904 1 70.39 ? C26 POV 710 D 1 
HETATM 10 C C27 POV . . . X 5 137.187 158.869 178.43 1 71.46 ? C27 POV 710 D 1 
HETATM 11 C C28 POV . . . X 5 138.281 158.279 177.538 1 71.87 ? C28 POV 710 D 1 
HETATM 12 C C29 POV . . . X 5 139.198 157.365 178.286 1 66.55 ? C29 POV 710 D 1 
HETATM 13 C C31 POV . . . X 5 139.058 162.837 184.974 1 70.01 ? C31 POV 710 D 1 
HETATM 14 C C32 POV . . . X 5 138.551 164.201 184.602 1 73.48 ? C32 POV 710 D 1 
HETATM 15 C C33 POV . . . X 5 139.538 165.069 183.841 1 73.28 ? C33 POV 710 D 1 
HETATM 16 C C34 POV . . . X 5 140.002 164.395 182.555 1 74.32 ? C34 POV 710 D 1 
HETATM 17 C C35 POV . . . X 5 138.875 164.042 181.595 1 77.45 ? C35 POV 710 D 1 
HETATM 18 C C36 POV . . . X 5 138.678 162.537 181.449 1 72.81 ? C36 POV 710 D 1 
HETATM 19 C C37 POV . . . X 5 137.675 162.131 180.375 1 73.95 ? C37 POV 710 D 1 
HETATM 20 C C38 POV . . . X 5 136.415 162.992 180.356 1 74.73 ? C38 POV 710 D 1 
HETATM 21 C C39 POV . . . X 5 135.653 163.041 181.676 1 73.4 ? C39 POV 710 D 1 
HETATM 22 H H29 POV . . . X 5 138.789 156.905 179.184 1 66.55 ? H29 POV 710 D 1 
HETATM 23 H H210 POV . . . X 5 140.947 156.347 178.659 1 64.42 ? H210 POV 710 D 1 
HETATM 24 H H22 POV . . . X 5 136.465 160.693 182.966 1 72.99 ? H22 POV 710 D 1 
HETATM 25 H H22A POV . . . X 5 136.379 159.237 183.936 1 72.99 ? H22A POV 710 D 1 
HETATM 26 H H32 POV . . . X 5 137.652 164.085 183.998 1 73.48 ? H32 POV 710 D 1 
HETATM 27 H H32A POV . . . X 5 138.258 164.723 185.512 1 73.48 ? H32A POV 710 D 1 
HETATM 28 H H23 POV . . . X 5 134.31 158.561 182.767 1 72.32 ? H23 POV 710 D 1 
HETATM 29 H H23A POV . . . X 5 134.346 160.035 181.822 1 72.32 ? H23A POV 710 D 1 
HETATM 30 H H33 POV . . . X 5 139.075 166.026 183.604 1 73.28 ? H33 POV 710 D 1 
HETATM 31 H H33A POV . . . X 5 140.4 165.28 184.473 1 73.28 ? H33A POV 710 D 1 
HETATM 32 H H24 POV . . . X 5 136.773 159.244 181.162 1 70.42 ? H24 POV 710 D 1 
HETATM 33 H H24A POV . . . X 5 136.226 157.674 181.712 1 70.42 ? H24A POV 710 D 1 
HETATM 34 H H34 POV . . . X 5 140.705 165.053 182.046 1 74.32 ? H34 POV 710 D 1 
HETATM 35 H H34A POV . . . X 5 140.545 163.486 182.81 1 74.32 ? H34A POV 710 D 1 
HETATM 36 H H25 POV . . . X 5 134.388 157.693 180.097 1 70.01 ? H25 POV 710 D 1 
HETATM 37 H H25A POV . . . X 5 134.784 159.327 179.611 1 70.01 ? H25A POV 710 D 1 
HETATM 38 H H35 POV . . . X 5 137.949 164.493 181.947 1 77.45 ? H35 POV 710 D 1 
HETATM 39 H H35A POV . . . X 5 139.087 164.473 180.618 1 77.45 ? H35A POV 710 D 1 
HETATM 40 H H26 POV . . . X 5 136.684 156.979 179.305 1 70.39 ? H26 POV 710 D 1 
HETATM 41 H H26A POV . . . X 5 135.581 157.501 178.05 1 70.39 ? H26A POV 710 D 1 
HETATM 42 H H36 POV . . . X 5 139.639 162.078 181.222 1 72.81 ? H36 POV 710 D 1 
HETATM 43 H H36A POV . . . X 5 138.35 162.132 182.405 1 72.81 ? H36A POV 710 D 1 
HETATM 44 H H27 POV . . . X 5 136.673 159.658 177.884 1 71.46 ? H27 POV 710 D 1 
HETATM 45 H H27A POV . . . X 5 137.651 159.333 179.299 1 71.46 ? H27A POV 710 D 1 
HETATM 46 H H37 POV . . . X 5 138.157 162.187 179.4 1 73.95 ? H37 POV 710 D 1 
HETATM 47 H H37A POV . . . X 5 137.391 161.091 180.53 1 73.95 ? H37A POV 710 D 1 
HETATM 48 H H28 POV . . . X 5 137.82 157.733 176.716 1 71.87 ? H28 POV 710 D 1 
HETATM 49 H H28A POV . . . X 5 138.861 159.088 177.097 1 71.87 ? H28A POV 710 D 1 
HETATM 50 H H38 POV . . . X 5 136.69 164.007 180.074 1 74.73 ? H38 POV 710 D 1 
HETATM 51 H H38A POV . . . X 5 135.748 162.617 179.582 1 74.73 ? H38A POV 710 D 1 
HETATM 52 H H39 POV . . . X 5 136.364 163.071 182.501 1 73.4 ? H39 POV 710 D 1 
HETATM 53 H H39A POV . . . X 5 135.071 162.127 181.79 1 73.4 ? H39A POV 710 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#