data_8T1V # _model_server_result.job_id XlvoklftxzUWe7AuG-dl4Q _model_server_result.datetime_utc '2024-12-19 15:02:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8T1V # _exptl.entry_id 8T1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.479 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{4-[(2,4-difluorophenyl)methyl]piperazin-1-yl}-7-methyl-N-(propan-2-yl)pyrido[3,4-b]pyrazin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T1V _cell.length_a 63.136 _cell.length_b 63.136 _cell.length_c 249.67 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 209 1_555 A SG CYS 196 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OD1 ASP 98 A ASP 118 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc2 A OD1 ASN 395 A ASN 321 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C22 H26 F2 N6' _chem_comp.formula_weight 412.479 _chem_comp.id XY8 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{4-[(2,4-difluorophenyl)methyl]piperazin-1-yl}-7-methyl-N-(propan-2-yl)pyrido[3,4-b]pyrazin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 XY8 sing 376 n n C03 C02 XY8 sing 377 n n C02 N04 XY8 sing 378 n n C27 C28 XY8 doub 379 n y C27 C25 XY8 sing 380 n y C28 C21 XY8 sing 381 n y N04 C05 XY8 sing 382 n n F26 C25 XY8 sing 383 n n C25 C24 XY8 doub 384 n y C29 C30 XY8 sing 385 n n C29 N19 XY8 sing 386 n n C21 C20 XY8 sing 387 n n C21 C22 XY8 doub 388 n y C20 N19 XY8 sing 389 n n C30 N16 XY8 sing 390 n n C05 N06 XY8 doub 391 n y C05 C15 XY8 sing 392 n y C24 C22 XY8 sing 393 n y N19 C18 XY8 sing 394 n n N06 C07 XY8 sing 395 n y C22 F23 XY8 sing 396 n n N16 C15 XY8 sing 397 n n N16 C17 XY8 sing 398 n n C18 C17 XY8 sing 399 n n C15 N14 XY8 doub 400 n y C07 C13 XY8 doub 401 n y C07 C08 XY8 sing 402 n y C13 C11 XY8 sing 403 n y N14 C08 XY8 sing 404 n y C08 C09 XY8 doub 405 n y C11 C12 XY8 sing 406 n n C11 N10 XY8 doub 407 n y C09 N10 XY8 sing 408 n y C01 H1 XY8 sing 409 n n C01 H2 XY8 sing 410 n n C01 H3 XY8 sing 411 n n C02 H4 XY8 sing 412 n n C03 H5 XY8 sing 413 n n C03 H6 XY8 sing 414 n n C03 H7 XY8 sing 415 n n C09 H8 XY8 sing 416 n n C12 H9 XY8 sing 417 n n C12 H10 XY8 sing 418 n n C12 H11 XY8 sing 419 n n C13 H12 XY8 sing 420 n n C17 H13 XY8 sing 421 n n C17 H14 XY8 sing 422 n n C18 H15 XY8 sing 423 n n C18 H16 XY8 sing 424 n n C20 H17 XY8 sing 425 n n C20 H18 XY8 sing 426 n n C24 H19 XY8 sing 427 n n C27 H20 XY8 sing 428 n n C28 H21 XY8 sing 429 n n C29 H22 XY8 sing 430 n n C29 H23 XY8 sing 431 n n C30 H24 XY8 sing 432 n n C30 H25 XY8 sing 433 n n N04 H26 XY8 sing 434 n n # _atom_sites.entry_id 8T1V _atom_sites.fract_transf_matrix[1][1] 0.015839 _atom_sites.fract_transf_matrix[1][2] 0.009145 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XY8 A 1 1201 701 XY8 XY8 . C 3 NA A 1 1202 1 NA NA . D 4 HOH A 1 1301 4 HOH HOH . D 4 HOH A 2 1302 3 HOH HOH . D 4 HOH A 3 1303 5 HOH HOH . D 4 HOH A 4 1304 2 HOH HOH . D 4 HOH A 5 1305 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XY8 . . . B 2 12.979 -10.467 3.784 1 38.54 ? C01 XY8 1201 A 1 HETATM 2 C C02 XY8 . . . B 2 12.141 -10.727 5.03 1 44.83 ? C02 XY8 1201 A 1 HETATM 3 C C03 XY8 . . . B 2 10.663 -10.441 4.767 1 46.9 ? C03 XY8 1201 A 1 HETATM 4 C C05 XY8 . . . B 2 12.503 -10.144 7.465 1 44.11 ? C05 XY8 1201 A 1 HETATM 5 C C07 XY8 . . . B 2 12.167 -11.704 9.173 1 51.68 ? C07 XY8 1201 A 1 HETATM 6 C C08 XY8 . . . B 2 12.248 -10.672 10.119 1 59.97 ? C08 XY8 1201 A 1 HETATM 7 C C09 XY8 . . . B 2 12.108 -11.02 11.459 1 63.19 ? C09 XY8 1201 A 1 HETATM 8 C C11 XY8 . . . B 2 11.826 -13.258 10.983 1 63.88 ? C11 XY8 1201 A 1 HETATM 9 C C12 XY8 . . . B 2 11.597 -14.655 11.472 1 69.54 ? C12 XY8 1201 A 1 HETATM 10 C C13 XY8 . . . B 2 11.954 -13.01 9.615 1 55.68 ? C13 XY8 1201 A 1 HETATM 11 C C15 XY8 . . . B 2 12.585 -9.106 8.417 1 40.91 ? C15 XY8 1201 A 1 HETATM 12 C C17 XY8 . . . B 2 13.44 -6.886 9.019 1 43.01 ? C17 XY8 1201 A 1 HETATM 13 C C18 XY8 . . . B 2 13.855 -5.565 8.376 1 41.48 ? C18 XY8 1201 A 1 HETATM 14 C C20 XY8 . . . B 2 12.938 -3.525 7.186 1 39.92 ? C20 XY8 1201 A 1 HETATM 15 C C21 XY8 . . . B 2 11.669 -2.746 6.949 1 43.51 ? C21 XY8 1201 A 1 HETATM 16 C C22 XY8 . . . B 2 11.154 -1.875 7.919 1 39.1 ? C22 XY8 1201 A 1 HETATM 17 C C24 XY8 . . . B 2 9.977 -1.168 7.706 1 33.29 ? C24 XY8 1201 A 1 HETATM 18 C C25 XY8 . . . B 2 9.298 -1.338 6.507 1 30.96 ? C25 XY8 1201 A 1 HETATM 19 C C27 XY8 . . . B 2 9.778 -2.196 5.528 1 37.18 ? C27 XY8 1201 A 1 HETATM 20 C C28 XY8 . . . B 2 10.959 -2.897 5.752 1 42.66 ? C28 XY8 1201 A 1 HETATM 21 C C29 XY8 . . . B 2 12.092 -5.854 6.659 1 32.87 ? C29 XY8 1201 A 1 HETATM 22 C C30 XY8 . . . B 2 11.653 -7.143 7.337 1 35.26 ? C30 XY8 1201 A 1 HETATM 23 F F23 XY8 . . . B 2 11.805 -1.707 9.082 1 43.46 ? F23 XY8 1201 A 1 HETATM 24 F F26 XY8 . . . B 2 8.16 -0.664 6.284 1 30.38 ? F26 XY8 1201 A 1 HETATM 25 N N04 XY8 . . . B 2 12.638 -9.843 6.089 1 40.47 ? N04 XY8 1201 A 1 HETATM 26 N N06 XY8 . . . B 2 12.295 -11.424 7.86 1 49.34 ? N06 XY8 1201 A 1 HETATM 27 N N10 XY8 . . . B 2 11.901 -12.275 11.909 1 67.28 ? N10 XY8 1201 A 1 HETATM 28 N N14 XY8 . . . B 2 12.453 -9.396 9.735 1 50.08 ? N14 XY8 1201 A 1 HETATM 29 N N16 XY8 . . . B 2 12.797 -7.754 8.018 1 37.51 ? N16 XY8 1201 A 1 HETATM 30 N N19 XY8 . . . B 2 12.657 -4.923 7.71 1 31.74 ? N19 XY8 1201 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #