data_8T1W # _model_server_result.job_id 80u798jPB81pmVGS0ZOBWQ _model_server_result.datetime_utc '2025-01-08 14:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8T1W # _exptl.entry_id 8T1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.516 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{2-[4-(2,4-difluorophenoxy)piperidin-1-yl]-3-{[(3R)-oxolan-3-yl]amino}-7,8-dihydropyrido[3,4-b]pyrazin-6(5H)-yl}ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8T1W _cell.length_a 63.731 _cell.length_b 63.731 _cell.length_c 250.932 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 189 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 209 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 196 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 216 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.03 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H29 F2 N5 O3' _chem_comp.formula_weight 473.516 _chem_comp.id X7T _chem_comp.mon_nstd_flag . _chem_comp.name 1-{2-[4-(2,4-difluorophenoxy)piperidin-1-yl]-3-{[(3R)-oxolan-3-yl]amino}-7,8-dihydropyrido[3,4-b]pyrazin-6(5H)-yl}ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 O2 X7T sing 374 n n C21 C22 X7T sing 375 n n O2 C20 X7T sing 376 n n C22 C19 X7T sing 377 n n C20 C19 X7T sing 378 n n C19 N5 X7T sing 379 n n C2 C3 X7T doub 380 n y C2 C1 X7T sing 381 n y C3 C4 X7T sing 382 n y F1 C1 X7T sing 383 n n C1 C6 X7T doub 384 n y N5 C18 X7T sing 385 n n C4 O1 X7T sing 386 n n C4 C5 X7T doub 387 n y O1 C7 X7T sing 388 n n C8 C7 X7T sing 389 n n C8 C9 X7T sing 390 n n C6 C5 X7T sing 391 n y C5 F2 X7T sing 392 n n C7 C11 X7T sing 393 n n C9 N1 X7T sing 394 n n C11 C10 X7T sing 395 n n C18 N4 X7T doub 396 n y C18 C12 X7T sing 397 n y N1 C12 X7T sing 398 n n N1 C10 X7T sing 399 n n N4 C17 X7T sing 400 n y C12 N2 X7T doub 401 n y C17 C16 X7T sing 402 n n C17 C13 X7T doub 403 n y N2 C13 X7T sing 404 n y C16 N3 X7T sing 405 n n C13 C14 X7T sing 406 n n C14 C15 X7T sing 407 n n N3 C15 X7T sing 408 n n N3 C23 X7T sing 409 n n O3 C23 X7T doub 410 n n C23 C24 X7T sing 411 n n C2 H1 X7T sing 412 n n C3 H2 X7T sing 413 n n C10 H3 X7T sing 414 n n C10 H4 X7T sing 415 n n C11 H5 X7T sing 416 n n C11 H6 X7T sing 417 n n C14 H7 X7T sing 418 n n C14 H8 X7T sing 419 n n C15 H9 X7T sing 420 n n C15 H10 X7T sing 421 n n C16 H11 X7T sing 422 n n C16 H12 X7T sing 423 n n C19 H13 X7T sing 424 n n C20 H14 X7T sing 425 n n C20 H15 X7T sing 426 n n C21 H16 X7T sing 427 n n C21 H17 X7T sing 428 n n C22 H18 X7T sing 429 n n C22 H19 X7T sing 430 n n C24 H20 X7T sing 431 n n C24 H21 X7T sing 432 n n C24 H22 X7T sing 433 n n C6 H23 X7T sing 434 n n C7 H24 X7T sing 435 n n C8 H25 X7T sing 436 n n C8 H26 X7T sing 437 n n C9 H27 X7T sing 438 n n C9 H28 X7T sing 439 n n N5 H29 X7T sing 440 n n # _atom_sites.entry_id 8T1W _atom_sites.fract_transf_matrix[1][1] 0.015691 _atom_sites.fract_transf_matrix[1][2] 0.009059 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id X7T _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 701 _pdbx_nonpoly_scheme.pdb_mon_id X7T _pdbx_nonpoly_scheme.auth_mon_id XY9 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 X7T . . . B 2 -9.328 1.682 5.607 1 136.32 ? C2 X7T 1201 A 1 HETATM 2 C C5 X7T . . . B 2 -11.328 0.861 7.34 1 128.98 ? C5 X7T 1201 A 1 HETATM 3 C C1 X7T . . . B 2 -9.199 0.519 6.349 1 132.82 ? C1 X7T 1201 A 1 HETATM 4 C C3 X7T . . . B 2 -10.48 2.445 5.73 1 154.37 ? C3 X7T 1201 A 1 HETATM 5 C C4 X7T . . . B 2 -11.481 2.039 6.61 1 144.51 ? C4 X7T 1201 A 1 HETATM 6 O O2 X7T . . . B 2 -12.226 11.009 3.541 1 139.9 ? O2 X7T 1201 A 1 HETATM 7 O O3 X7T . . . B 2 -11.707 13.004 12.258 1 196.14 ? O3 X7T 1201 A 1 HETATM 8 O O1 X7T . . . B 2 -12.639 2.807 6.716 1 152.32 ? O1 X7T 1201 A 1 HETATM 9 C C10 X7T . . . B 2 -14.064 5.736 8.579 1 112.7 ? C10 X7T 1201 A 1 HETATM 10 C C11 X7T . . . B 2 -13.991 4.393 7.866 1 146.14 ? C11 X7T 1201 A 1 HETATM 11 C C12 X7T . . . B 2 -13.254 8.015 8.551 1 127.6 ? C12 X7T 1201 A 1 HETATM 12 C C13 X7T . . . B 2 -13.81 9.302 10.396 1 171.81 ? C13 X7T 1201 A 1 HETATM 13 C C14 X7T . . . B 2 -14.36 9.339 11.792 1 169.82 ? C14 X7T 1201 A 1 HETATM 14 C C15 X7T . . . B 2 -14.639 10.757 12.264 1 188.39 ? C15 X7T 1201 A 1 HETATM 15 C C16 X7T . . . B 2 -13.465 11.802 10.39 1 174.16 ? C16 X7T 1201 A 1 HETATM 16 C C17 X7T . . . B 2 -13.389 10.452 9.73 1 172.13 ? C17 X7T 1201 A 1 HETATM 17 C C18 X7T . . . B 2 -12.817 9.178 7.884 1 153.58 ? C18 X7T 1201 A 1 HETATM 18 C C19 X7T . . . B 2 -12.894 9.936 5.528 1 141.82 ? C19 X7T 1201 A 1 HETATM 19 C C20 X7T . . . B 2 -11.824 10.806 4.9 1 153.87 ? C20 X7T 1201 A 1 HETATM 20 C C21 X7T . . . B 2 -13.377 10.191 3.284 1 158.64 ? C21 X7T 1201 A 1 HETATM 21 C C22 X7T . . . B 2 -13.373 9.129 4.352 1 147.89 ? C22 X7T 1201 A 1 HETATM 22 C C23 X7T . . . B 2 -12.605 12.285 12.674 1 189.95 ? C23 X7T 1201 A 1 HETATM 23 C C24 X7T . . . B 2 -12.722 12.07 14.165 1 199.13 ? C24 X7T 1201 A 1 HETATM 24 C C6 X7T . . . B 2 -10.186 0.088 7.222 1 128.91 ? C6 X7T 1201 A 1 HETATM 25 C C7 X7T . . . B 2 -12.557 3.934 7.608 1 154.19 ? C7 X7T 1201 A 1 HETATM 26 C C8 X7T . . . B 2 -11.779 5.045 6.912 1 152.73 ? C8 X7T 1201 A 1 HETATM 27 C C9 X7T . . . B 2 -11.784 6.294 7.768 1 136.92 ? C9 X7T 1201 A 1 HETATM 28 F F1 X7T . . . B 2 -8.084 -0.193 6.204 1 125.83 ? F1 X7T 1201 A 1 HETATM 29 F F2 X7T . . . B 2 -12.296 0.481 8.177 1 130.48 ? F2 X7T 1201 A 1 HETATM 30 N N1 X7T . . . B 2 -13.175 6.729 7.957 1 136.17 ? N1 X7T 1201 A 1 HETATM 31 N N2 X7T . . . B 2 -13.74 8.099 9.808 1 144.09 ? N2 X7T 1201 A 1 HETATM 32 N N3 X7T . . . B 2 -13.54 11.643 11.847 1 177.29 ? N3 X7T 1201 A 1 HETATM 33 N N4 X7T . . . B 2 -12.897 10.389 8.48 1 157.62 ? N4 X7T 1201 A 1 HETATM 34 N N5 X7T . . . B 2 -12.314 9.101 6.572 1 156.2 ? N5 X7T 1201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #