data_8T3K # _model_server_result.job_id y5YRqOMzndvyEvT5EainWw _model_server_result.datetime_utc '2024-11-04 22:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8T3K # _exptl.entry_id 8T3K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T3K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 307 n n N C13 POV sing 308 n n N C14 POV sing 309 n n N C15 POV sing 310 n n P O11 POV sing 311 n n P O12 POV sing 312 n n P O13 POV sing 313 n n P O14 POV doub 314 n n C1 C2 POV sing 315 n n C1 O11 POV sing 316 n n C1 H1 POV sing 317 n n C1 H1A POV sing 318 n n C2 C3 POV sing 319 n n C2 O21 POV sing 320 n n C2 H2 POV sing 321 n n C3 O31 POV sing 322 n n C3 H3 POV sing 323 n n C3 H3A POV sing 324 n n C210 C211 POV sing 325 n n C210 C29 POV doub 326 z n C210 H210 POV sing 327 n n C310 C311 POV sing 328 n n C310 C39 POV sing 329 n n C310 H310 POV sing 330 n n C310 H31A POV sing 331 n n C11 C12 POV sing 332 n n C11 O12 POV sing 333 n n C11 H11 POV sing 334 n n C11 H11A POV sing 335 n n C211 C212 POV sing 336 n n C211 H211 POV sing 337 n n C211 H21A POV sing 338 n n C311 C312 POV sing 339 n n C311 H311 POV sing 340 n n C311 H31B POV sing 341 n n C12 H12 POV sing 342 n n C12 H12A POV sing 343 n n C212 C213 POV sing 344 n n C212 H212 POV sing 345 n n C212 H21B POV sing 346 n n C312 C313 POV sing 347 n n C312 H312 POV sing 348 n n C312 H31C POV sing 349 n n C13 H13 POV sing 350 n n C13 H13A POV sing 351 n n C13 H13B POV sing 352 n n C213 C214 POV sing 353 n n C213 H213 POV sing 354 n n C213 H21C POV sing 355 n n C313 C314 POV sing 356 n n C313 H313 POV sing 357 n n C313 H31D POV sing 358 n n C14 H14 POV sing 359 n n C14 H14A POV sing 360 n n C14 H14B POV sing 361 n n C214 C215 POV sing 362 n n C214 H214 POV sing 363 n n C214 H21D POV sing 364 n n C314 C315 POV sing 365 n n C314 H314 POV sing 366 n n C314 H31E POV sing 367 n n C15 H15 POV sing 368 n n C15 H15A POV sing 369 n n C15 H15B POV sing 370 n n C215 C216 POV sing 371 n n C215 H215 POV sing 372 n n C215 H21E POV sing 373 n n C315 C316 POV sing 374 n n C315 H315 POV sing 375 n n C315 H31F POV sing 376 n n C216 C217 POV sing 377 n n C216 H216 POV sing 378 n n C216 H21F POV sing 379 n n C316 H316 POV sing 380 n n C316 H31G POV sing 381 n n C316 H31H POV sing 382 n n C217 C218 POV sing 383 n n C217 H217 POV sing 384 n n C217 H21G POV sing 385 n n C218 H218 POV sing 386 n n C218 H21H POV sing 387 n n C218 H21J POV sing 388 n n C21 O21 POV sing 389 n n C21 C22 POV sing 390 n n C21 O22 POV doub 391 n n C22 C23 POV sing 392 n n C22 H22 POV sing 393 n n C22 H22A POV sing 394 n n C23 C24 POV sing 395 n n C23 H23 POV sing 396 n n C23 H23A POV sing 397 n n C24 C25 POV sing 398 n n C24 H24 POV sing 399 n n C24 H24A POV sing 400 n n C25 C26 POV sing 401 n n C25 H25 POV sing 402 n n C25 H25A POV sing 403 n n C26 C27 POV sing 404 n n C26 H26 POV sing 405 n n C26 H26A POV sing 406 n n C27 C28 POV sing 407 n n C27 H27 POV sing 408 n n C27 H27A POV sing 409 n n C28 C29 POV sing 410 n n C28 H28 POV sing 411 n n C28 H28A POV sing 412 n n C29 H29 POV sing 413 n n C31 O31 POV sing 414 n n C31 C32 POV sing 415 n n C31 O32 POV doub 416 n n C32 C33 POV sing 417 n n C32 H32 POV sing 418 n n C32 H32A POV sing 419 n n C33 C34 POV sing 420 n n C33 H33 POV sing 421 n n C33 H33A POV sing 422 n n C34 C35 POV sing 423 n n C34 H34 POV sing 424 n n C34 H34A POV sing 425 n n C35 C36 POV sing 426 n n C35 H35 POV sing 427 n n C35 H35A POV sing 428 n n C36 C37 POV sing 429 n n C36 H36 POV sing 430 n n C36 H36A POV sing 431 n n C37 C38 POV sing 432 n n C37 H37 POV sing 433 n n C37 H37A POV sing 434 n n C38 C39 POV sing 435 n n C38 H38 POV sing 436 n n C38 H38A POV sing 437 n n C39 H39 POV sing 438 n n C39 H39A POV sing 439 n n # _atom_sites.entry_id 8T3K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 POV D 1 701 4 POV POV . D 3 POV D 1 702 5 POV POV . E 3 POV D 1 703 7 POV POV . F 3 POV D 1 704 8 POV POV . G 3 POV D 1 705 9 POV POV . H 3 POV D 1 706 10 POV POV . I 3 POV D 1 707 11 POV POV . J 4 ATP D 1 708 1 ATP ATP . K 3 POV C 1 601 1 POV POV . L 3 POV C 1 602 2 POV POV . M 3 POV C 1 603 3 POV POV . N 3 POV C 1 604 6 POV POV . O 3 POV C 1 605 12 POV POV . P 3 POV C 1 606 13 POV POV . Q 4 ATP C 1 607 2 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P POV . . . C 3 166.209 136.503 128.064 1 36.7 ? P POV 701 D 1 HETATM 2 C C1 POV . . . C 3 166.908 134.593 126.387 1 36.7 ? C1 POV 701 D 1 HETATM 3 C C2 POV . . . C 3 165.768 134.805 125.385 1 36.7 ? C2 POV 701 D 1 HETATM 4 C C3 POV . . . C 3 164.517 134.044 125.833 1 36.7 ? C3 POV 701 D 1 HETATM 5 C C210 POV . . . C 3 176.044 135.832 133.443 1 36.7 ? C210 POV 701 D 1 HETATM 6 C C310 POV . . . C 3 161.613 136.039 129.699 1 36.7 ? C310 POV 701 D 1 HETATM 7 O O11 POV . . . C 3 167.257 135.817 126.98 1 36.7 ? O11 POV 701 D 1 HETATM 8 C C211 POV . . . C 3 174.517 135.741 133.455 1 36.7 ? C211 POV 701 D 1 HETATM 9 C C311 POV . . . C 3 161.99 137.434 130.21 1 36.7 ? C311 POV 701 D 1 HETATM 10 O O12 POV . . . C 3 166.894 137.842 128.755 1 36.7 ? O12 POV 701 D 1 HETATM 11 C C212 POV . . . C 3 173.973 136.29 134.774 1 36.7 ? C212 POV 701 D 1 HETATM 12 C C312 POV . . . C 3 163.454 137.472 130.67 1 36.7 ? C312 POV 701 D 1 HETATM 13 O O13 POV . . . C 3 164.93 136.82 127.443 1 36.7 ? O13 POV 701 D 1 HETATM 14 C C213 POV . . . C 3 172.55 135.771 134.982 1 36.7 ? C213 POV 701 D 1 HETATM 15 C C313 POV . . . C 3 163.657 136.669 131.96 1 36.7 ? C313 POV 701 D 1 HETATM 16 O O14 POV . . . C 3 165.796 135.543 129.081 1 36.7 ? O14 POV 701 D 1 HETATM 17 C C214 POV . . . C 3 171.983 136.326 136.289 1 36.7 ? C214 POV 701 D 1 HETATM 18 C C314 POV . . . C 3 165.145 136.596 132.325 1 36.7 ? C314 POV 701 D 1 HETATM 19 C C215 POV . . . C 3 170.749 135.519 136.701 1 36.7 ? C215 POV 701 D 1 HETATM 20 C C315 POV . . . C 3 165.789 137.975 132.498 1 36.7 ? C315 POV 701 D 1 HETATM 21 C C216 POV . . . C 3 169.696 135.572 135.598 1 36.7 ? C216 POV 701 D 1 HETATM 22 C C316 POV . . . C 3 165.069 138.787 133.57 1 36.7 ? C316 POV 701 D 1 HETATM 23 C C21 POV . . . C 3 165.67 135.107 123.058 1 36.7 ? C21 POV 701 D 1 HETATM 24 O O21 POV . . . C 3 166.168 134.344 124.127 1 36.7 ? O21 POV 701 D 1 HETATM 25 O O22 POV . . . C 3 166.41 135.748 122.394 1 36.7 ? O22 POV 701 D 1 HETATM 26 C C23 POV . . . C 3 180.231 134.096 129.476 1 36.7 ? C23 POV 701 D 1 HETATM 27 C C24 POV . . . C 3 179.446 134.549 128.237 1 36.7 ? C24 POV 701 D 1 HETATM 28 C C25 POV . . . C 3 178.04 133.942 128.274 1 36.7 ? C25 POV 701 D 1 HETATM 29 C C26 POV . . . C 3 177.036 134.939 128.865 1 36.7 ? C26 POV 701 D 1 HETATM 30 C C27 POV . . . C 3 177.409 135.319 130.298 1 36.7 ? C27 POV 701 D 1 HETATM 31 C C28 POV . . . C 3 176.254 136.116 130.898 1 36.7 ? C28 POV 701 D 1 HETATM 32 C C29 POV . . . C 3 176.633 136.638 132.284 1 36.7 ? C29 POV 701 D 1 HETATM 33 C C31 POV . . . C 3 162.461 133.19 125.034 1 36.7 ? C31 POV 701 D 1 HETATM 34 O O31 POV . . . C 3 163.676 133.842 124.728 1 36.7 ? O31 POV 701 D 1 HETATM 35 C C32 POV . . . C 3 161.608 132.585 123.909 1 36.7 ? C32 POV 701 D 1 HETATM 36 O O32 POV . . . C 3 162.099 133.111 126.158 1 36.7 ? O32 POV 701 D 1 HETATM 37 C C33 POV . . . C 3 160.361 131.913 124.508 1 36.7 ? C33 POV 701 D 1 HETATM 38 C C34 POV . . . C 3 159.421 132.978 125.096 1 36.7 ? C34 POV 701 D 1 HETATM 39 C C35 POV . . . C 3 158.995 132.542 126.506 1 36.7 ? C35 POV 701 D 1 HETATM 40 C C36 POV . . . C 3 158.033 133.566 127.136 1 36.7 ? C36 POV 701 D 1 HETATM 41 C C37 POV . . . C 3 158.704 134.92 127.408 1 36.7 ? C37 POV 701 D 1 HETATM 42 C C38 POV . . . C 3 159.897 134.767 128.368 1 36.7 ? C38 POV 701 D 1 HETATM 43 C C39 POV . . . C 3 160.323 136.149 128.869 1 36.7 ? C39 POV 701 D 1 HETATM 44 H H29 POV . . . C 3 177.268 137.51 132.433 1 36.7 ? H29 POV 701 D 1 HETATM 45 H H1 POV . . . C 3 166.603 133.882 127.153 1 36.7 ? H1 POV 701 D 1 HETATM 46 H H1A POV . . . C 3 167.772 134.164 125.882 1 36.7 ? H1A POV 701 D 1 HETATM 47 H H2 POV . . . C 3 165.534 135.867 125.334 1 36.7 ? H2 POV 701 D 1 HETATM 48 H H3 POV . . . C 3 164.797 133.087 126.271 1 36.7 ? H3 POV 701 D 1 HETATM 49 H H3A POV . . . C 3 163.993 134.605 126.605 1 36.7 ? H3A POV 701 D 1 HETATM 50 H H310 POV . . . C 3 162.419 135.629 129.092 1 36.7 ? H310 POV 701 D 1 HETATM 51 H H31A POV . . . C 3 161.466 135.357 130.536 1 36.7 ? H31A POV 701 D 1 HETATM 52 H H210 POV . . . C 3 176.665 135.359 134.202 1 36.7 ? H210 POV 701 D 1 HETATM 53 H H211 POV . . . C 3 174.104 136.304 132.619 1 36.7 ? H211 POV 701 D 1 HETATM 54 H H21A POV . . . C 3 174.205 134.706 133.326 1 36.7 ? H21A POV 701 D 1 HETATM 55 H H311 POV . . . C 3 161.834 138.169 129.421 1 36.7 ? H311 POV 701 D 1 HETATM 56 H H31B POV . . . C 3 161.338 137.711 131.037 1 36.7 ? H31B POV 701 D 1 HETATM 57 H H212 POV . . . C 3 174.61 135.981 135.601 1 36.7 ? H212 POV 701 D 1 HETATM 58 H H21B POV . . . C 3 173.977 137.379 134.758 1 36.7 ? H21B POV 701 D 1 HETATM 59 H H32 POV . . . C 3 161.312 133.363 123.207 1 36.7 ? H32 POV 701 D 1 HETATM 60 H H312 POV . . . C 3 164.093 137.07 129.886 1 36.7 ? H312 POV 701 D 1 HETATM 61 H H32A POV . . . C 3 162.192 131.856 123.349 1 36.7 ? H32A POV 701 D 1 HETATM 62 H H31C POV . . . C 3 163.759 138.505 130.831 1 36.7 ? H31C POV 701 D 1 HETATM 63 H H213 POV . . . C 3 171.919 136.069 134.146 1 36.7 ? H213 POV 701 D 1 HETATM 64 H H21C POV . . . C 3 172.551 134.682 135.009 1 36.7 ? H21C POV 701 D 1 HETATM 65 H H33 POV . . . C 3 159.841 131.342 123.74 1 36.7 ? H33 POV 701 D 1 HETATM 66 H H313 POV . . . C 3 163.101 137.132 132.773 1 36.7 ? H313 POV 701 D 1 HETATM 67 H H33A POV . . . C 3 160.655 131.208 125.284 1 36.7 ? H33A POV 701 D 1 HETATM 68 H H31D POV . . . C 3 163.259 135.663 131.834 1 36.7 ? H31D POV 701 D 1 HETATM 69 H H24 POV . . . C 3 179.384 135.636 128.21 1 36.7 ? H24 POV 701 D 1 HETATM 70 H H214 POV . . . C 3 172.738 136.279 137.073 1 36.7 ? H214 POV 701 D 1 HETATM 71 H H24A POV . . . C 3 179.964 134.238 127.331 1 36.7 ? H24A POV 701 D 1 HETATM 72 H H21D POV . . . C 3 171.718 137.375 136.165 1 36.7 ? H21D POV 701 D 1 HETATM 73 H H34 POV . . . C 3 159.924 133.943 125.136 1 36.7 ? H34 POV 701 D 1 HETATM 74 H H314 POV . . . C 3 165.259 136.03 133.248 1 36.7 ? H314 POV 701 D 1 HETATM 75 H H34A POV . . . C 3 158.546 133.101 124.459 1 36.7 ? H34A POV 701 D 1 HETATM 76 H H31E POV . . . C 3 165.677 136.048 131.548 1 36.7 ? H31E POV 701 D 1 HETATM 77 H H25 POV . . . C 3 177.733 133.662 127.267 1 36.7 ? H25 POV 701 D 1 HETATM 78 H H215 POV . . . C 3 171.03 134.485 136.897 1 36.7 ? H215 POV 701 D 1 HETATM 79 H H25A POV . . . C 3 178.048 133.03 128.869 1 36.7 ? H25A POV 701 D 1 HETATM 80 H H21E POV . . . C 3 170.337 135.918 137.627 1 36.7 ? H21E POV 701 D 1 HETATM 81 H H35 POV . . . C 3 158.512 131.567 126.458 1 36.7 ? H35 POV 701 D 1 HETATM 82 H H315 POV . . . C 3 166.837 137.858 132.769 1 36.7 ? H315 POV 701 D 1 HETATM 83 H H35A POV . . . C 3 159.876 132.43 127.137 1 36.7 ? H35A POV 701 D 1 HETATM 84 H H31F POV . . . C 3 165.763 138.513 131.552 1 36.7 ? H31F POV 701 D 1 HETATM 85 H H26 POV . . . C 3 177.003 135.835 128.246 1 36.7 ? H26 POV 701 D 1 HETATM 86 H H26A POV . . . C 3 176.038 134.505 128.85 1 36.7 ? H26A POV 701 D 1 HETATM 87 H H36 POV . . . C 3 157.182 133.714 126.473 1 36.7 ? H36 POV 701 D 1 HETATM 88 H H316 POV . . . C 3 165.553 139.758 133.664 1 36.7 ? H316 POV 701 D 1 HETATM 89 H H36A POV . . . C 3 157.643 133.165 128.07 1 36.7 ? H36A POV 701 D 1 HETATM 90 H H31G POV . . . C 3 164.029 138.918 133.276 1 36.7 ? H31G POV 701 D 1 HETATM 91 H H31H POV . . . C 3 165.123 138.251 134.517 1 36.7 ? H31H POV 701 D 1 HETATM 92 H H27 POV . . . C 3 177.601 134.425 130.89 1 36.7 ? H27 POV 701 D 1 HETATM 93 H H27A POV . . . C 3 178.324 135.91 130.308 1 36.7 ? H27A POV 701 D 1 HETATM 94 H H37 POV . . . C 3 159.043 135.356 126.469 1 36.7 ? H37 POV 701 D 1 HETATM 95 H H37A POV . . . C 3 157.977 135.61 127.835 1 36.7 ? H37A POV 701 D 1 HETATM 96 H H28 POV . . . C 3 176.001 136.95 130.245 1 36.7 ? H28 POV 701 D 1 HETATM 97 H H28A POV . . . C 3 175.368 135.487 130.969 1 36.7 ? H28A POV 701 D 1 HETATM 98 H H38 POV . . . C 3 159.622 134.132 129.209 1 36.7 ? H38 POV 701 D 1 HETATM 99 H H38A POV . . . C 3 160.728 134.28 127.859 1 36.7 ? H38A POV 701 D 1 HETATM 100 H H39 POV . . . C 3 159.529 136.585 129.474 1 36.7 ? H39 POV 701 D 1 HETATM 101 H H39A POV . . . C 3 160.482 136.817 128.024 1 36.7 ? H39A POV 701 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 101 #