data_8T3M
#
_model_server_result.job_id            596_7ezLxYo43JoUNRYd9A 
_model_server_result.datetime_utc      '2024-11-05 16:24:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8t3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":801}' 
#
_entry.id    8T3M 
#
_exptl.entry_id    8T3M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              382.429 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8T3M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8T3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 516 A GLY 643 1_555 F NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 F NA NA . A NA 802 1_555 B O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc3 F NA NA . A NA 802 1_555 C O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc4 F NA NA . A NA 802 1_555 D O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
#
_chem_comp.formula           'C17 H35 O7 P' 
_chem_comp.formula_weight    382.429 
_chem_comp.id                NKN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '14:0 LPA;myristoyl lysophosphatidic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA PAC NKN sing 369 n n 
OAB PAC NKN sing 370 n n 
PAC OAD NKN doub 371 n n 
PAC OAF NKN sing 372 n n 
OAE CAK NKN doub 373 n n 
OAF CAG NKN sing 374 n n 
CAG CAH NKN sing 375 n n 
CAH CAI NKN sing 376 n n 
CAH OAY NKN sing 377 n n 
CAI OAJ NKN sing 378 n n 
OAJ CAK NKN sing 379 n n 
CAK CAL NKN sing 380 n n 
CAL CAM NKN sing 381 n n 
CAM CAN NKN sing 382 n n 
CAN CAO NKN sing 383 n n 
CAO CAP NKN sing 384 n n 
CAP CAQ NKN sing 385 n n 
CAQ CAR NKN sing 386 n n 
CAR CAS NKN sing 387 n n 
CAS CAT NKN sing 388 n n 
CAT CAU NKN sing 389 n n 
CAU CAV NKN sing 390 n n 
CAV CAW NKN sing 391 n n 
CAW CAX NKN sing 392 n n 
CAG HAG NKN sing 393 n n 
CAG HAGA NKN sing 394 n n 
CAH HAH NKN sing 395 n n 
CAI HAI NKN sing 396 n n 
CAI HAIA NKN sing 397 n n 
CAL HAL NKN sing 398 n n 
CAL HALA NKN sing 399 n n 
CAM HAM NKN sing 400 n n 
CAM HAMA NKN sing 401 n n 
CAN HAN NKN sing 402 n n 
CAN HANA NKN sing 403 n n 
CAO HAO NKN sing 404 n n 
CAO HAOA NKN sing 405 n n 
CAP HAP NKN sing 406 n n 
CAP HAPA NKN sing 407 n n 
CAQ HAQ NKN sing 408 n n 
CAQ HAQA NKN sing 409 n n 
CAR HAR NKN sing 410 n n 
CAR HARA NKN sing 411 n n 
CAS HAS NKN sing 412 n n 
CAS HASA NKN sing 413 n n 
CAT HAT NKN sing 414 n n 
CAT HATA NKN sing 415 n n 
CAU HAU NKN sing 416 n n 
CAU HAUA NKN sing 417 n n 
CAV HAV NKN sing 418 n n 
CAV HAVA NKN sing 419 n n 
CAW HAW NKN sing 420 n n 
CAW HAWA NKN sing 421 n n 
CAX HAX NKN sing 422 n n 
CAX HAXA NKN sing 423 n n 
CAX HAXB NKN sing 424 n n 
OAY HOAY NKN sing 425 n n 
OAA HOAA NKN sing 426 n n 
OAB HOAB NKN sing 427 n n 
#
_atom_sites.entry_id                     8T3M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 85R A 1 801 801 85R RLP . 
F 3 NA A 1 802 4 NA NA . 
G 3 NA A 1 803 5 NA NA . 
H 4 NKN D 1 801 801 NKN LPA . 
I 4 NKN B 1 801 801 NKN LPA . 
J 4 NKN C 1 801 801 NKN LPA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA NKN . . . J 4 133.527 166.287 147.555 1 45.83 ? OAA NKN 801 C 1 
HETATM 2 O OAB NKN . . . J 4 133.972 165.374 149.644 1 45.83 ? OAB NKN 801 C 1 
HETATM 3 P PAC NKN . . . J 4 134.585 166.102 148.541 1 45.83 ? PAC NKN 801 C 1 
HETATM 4 O OAD NKN . . . J 4 134.814 167.433 149.09 1 45.83 ? OAD NKN 801 C 1 
HETATM 5 O OAE NKN . . . J 4 139.788 166.637 145.223 1 45.83 ? OAE NKN 801 C 1 
HETATM 6 O OAF NKN . . . J 4 135.934 165.381 147.947 1 45.83 ? OAF NKN 801 C 1 
HETATM 7 C CAG NKN . . . J 4 136.714 166.127 147.07 1 45.83 ? CAG NKN 801 C 1 
HETATM 8 C CAH NKN . . . J 4 136.653 165.435 145.717 1 45.83 ? CAH NKN 801 C 1 
HETATM 9 C CAI NKN . . . J 4 136.89 166.434 144.592 1 45.83 ? CAI NKN 801 C 1 
HETATM 10 O OAJ NKN . . . J 4 137.721 167.459 145.045 1 45.83 ? OAJ NKN 801 C 1 
HETATM 11 C CAK NKN . . . J 4 139.047 167.346 144.635 1 45.83 ? CAK NKN 801 C 1 
HETATM 12 C CAL NKN . . . J 4 139.533 168.145 143.433 1 45.83 ? CAL NKN 801 C 1 
HETATM 13 C CAM NKN . . . J 4 138.344 168.819 142.759 1 45.83 ? CAM NKN 801 C 1 
HETATM 14 C CAN NKN . . . J 4 138.837 169.557 141.522 1 45.83 ? CAN NKN 801 C 1 
HETATM 15 C CAO NKN . . . J 4 137.895 169.271 140.356 1 45.83 ? CAO NKN 801 C 1 
HETATM 16 C CAP NKN . . . J 4 138.497 168.169 139.495 1 45.83 ? CAP NKN 801 C 1 
HETATM 17 C CAQ NKN . . . J 4 139.468 168.794 138.509 1 45.83 ? CAQ NKN 801 C 1 
HETATM 18 C CAR NKN . . . J 4 138.866 168.726 137.106 1 45.83 ? CAR NKN 801 C 1 
HETATM 19 C CAS NKN . . . J 4 137.697 169.7 137.01 1 45.83 ? CAS NKN 801 C 1 
HETATM 20 C CAT NKN . . . J 4 138.066 171.054 136.415 1 45.83 ? CAT NKN 801 C 1 
HETATM 21 C CAU NKN . . . J 4 139.205 171.755 137.139 1 45.83 ? CAU NKN 801 C 1 
HETATM 22 C CAV NKN . . . J 4 139.312 173.192 136.65 1 45.83 ? CAV NKN 801 C 1 
HETATM 23 C CAW NKN . . . J 4 140.213 173.963 137.608 1 45.83 ? CAW NKN 801 C 1 
HETATM 24 C CAX NKN . . . J 4 141.672 173.698 137.249 1 45.83 ? CAX NKN 801 C 1 
HETATM 25 O OAY NKN . . . J 4 137.631 164.436 145.672 1 45.83 ? OAY NKN 801 C 1 
HETATM 26 H HAG NKN . . . J 4 137.739 166.168 147.426 1 66.98 ? HAG NKN 801 C 1 
HETATM 27 H HAGA NKN . . . J 4 136.304 167.128 147.003 1 66.98 ? HAGA NKN 801 C 1 
HETATM 28 H HAH NKN . . . J 4 135.673 164.991 145.6 1 66.98 ? HAH NKN 801 C 1 
HETATM 29 H HAI NKN . . . J 4 135.94 166.851 144.273 1 66.98 ? HAI NKN 801 C 1 
HETATM 30 H HAIA NKN . . . J 4 137.363 165.93 143.756 1 66.98 ? HAIA NKN 801 C 1 
HETATM 31 H HAL NKN . . . J 4 140.01 167.475 142.725 1 66.98 ? HAL NKN 801 C 1 
HETATM 32 H HALA NKN . . . J 4 140.242 168.898 143.758 1 66.98 ? HALA NKN 801 C 1 
HETATM 33 H HAM NKN . . . J 4 137.624 168.065 142.461 1 66.98 ? HAM NKN 801 C 1 
HETATM 34 H HAMA NKN . . . J 4 137.881 169.523 143.442 1 66.98 ? HAMA NKN 801 C 1 
HETATM 35 H HAN NKN . . . J 4 138.858 170.623 141.719 1 66.98 ? HAN NKN 801 C 1 
HETATM 36 H HANA NKN . . . J 4 139.836 169.214 141.277 1 66.98 ? HANA NKN 801 C 1 
HETATM 37 H HAO NKN . . . J 4 137.77 170.172 139.767 1 66.98 ? HAO NKN 801 C 1 
HETATM 38 H HAOA NKN . . . J 4 136.931 168.945 140.731 1 66.98 ? HAOA NKN 801 C 1 
HETATM 39 H HAP NKN . . . J 4 139.024 167.463 140.128 1 66.98 ? HAP NKN 801 C 1 
HETATM 40 H HAPA NKN . . . J 4 137.706 167.655 138.959 1 66.98 ? HAPA NKN 801 C 1 
HETATM 41 H HAQ NKN . . . J 4 140.409 168.261 138.541 1 66.98 ? HAQ NKN 801 C 1 
HETATM 42 H HAQA NKN . . . J 4 139.645 169.822 138.793 1 66.98 ? HAQA NKN 801 C 1 
HETATM 43 H HAR NKN . . . J 4 139.623 168.985 136.374 1 66.98 ? HAR NKN 801 C 1 
HETATM 44 H HARA NKN . . . J 4 138.508 167.719 136.915 1 66.98 ? HARA NKN 801 C 1 
HETATM 45 H HAS NKN . . . J 4 136.898 169.252 136.431 1 66.98 ? HAS NKN 801 C 1 
HETATM 46 H HAT NKN . . . J 4 137.195 171.695 136.442 1 66.98 ? HAT NKN 801 C 1 
HETATM 47 H HAU NKN . . . J 4 140.138 171.237 136.94 1 66.98 ? HAU NKN 801 C 1 
HETATM 48 H HAUA NKN . . . J 4 139.006 171.754 138.205 1 66.98 ? HAUA NKN 801 C 1 
HETATM 49 H HAV NKN . . . J 4 139.746 173.203 135.657 1 66.98 ? HAV NKN 801 C 1 
HETATM 50 H HAVA NKN . . . J 4 138.327 173.644 136.624 1 66.98 ? HAVA NKN 801 C 1 
HETATM 51 H HAW NKN . . . J 4 140.008 175.024 137.52 1 66.98 ? HAW NKN 801 C 1 
HETATM 52 H HAWA NKN . . . J 4 140.024 173.637 138.625 1 66.98 ? HAWA NKN 801 C 1 
HETATM 53 H HAX NKN . . . J 4 142.313 174.284 137.899 1 66.98 ? HAX NKN 801 C 1 
HETATM 54 H HAXA NKN . . . J 4 141.893 172.643 137.374 1 66.98 ? HAXA NKN 801 C 1 
HETATM 55 H HAXB NKN . . . J 4 141.841 173.982 136.214 1 66.98 ? HAXB NKN 801 C 1 
HETATM 56 H HOAY NKN . . . J 4 137.413 163.811 144.998 1 45.83 ? HOAY NKN 801 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           56 
#