data_8T3O # _model_server_result.job_id TBvB7wofElfmGJr0oddqng _model_server_result.datetime_utc '2024-11-04 22:52:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 8T3O # _exptl.entry_id 8T3O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T3O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 90 R CYS 111 1_555 A SG CYS 163 R CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 E SG CYS 21 N CYS 22 1_555 E SG CYS 95 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 E SG CYS 159 N CYS 160 1_555 E SG CYS 229 N CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 407 n n C1 O2 PLM doub 408 n n C1 C2 PLM sing 409 n n O1 H PLM sing 410 n n C2 C3 PLM sing 411 n n C2 H21 PLM sing 412 n n C2 H22 PLM sing 413 n n C3 C4 PLM sing 414 n n C3 H31 PLM sing 415 n n C3 H32 PLM sing 416 n n C4 C5 PLM sing 417 n n C4 H41 PLM sing 418 n n C4 H42 PLM sing 419 n n C5 C6 PLM sing 420 n n C5 H51 PLM sing 421 n n C5 H52 PLM sing 422 n n C6 C7 PLM sing 423 n n C6 H61 PLM sing 424 n n C6 H62 PLM sing 425 n n C7 C8 PLM sing 426 n n C7 H71 PLM sing 427 n n C7 H72 PLM sing 428 n n C8 C9 PLM sing 429 n n C8 H81 PLM sing 430 n n C8 H82 PLM sing 431 n n C9 CA PLM sing 432 n n C9 H91 PLM sing 433 n n C9 H92 PLM sing 434 n n CA CB PLM sing 435 n n CA HA1 PLM sing 436 n n CA HA2 PLM sing 437 n n CB CC PLM sing 438 n n CB HB1 PLM sing 439 n n CB HB2 PLM sing 440 n n CC CD PLM sing 441 n n CC HC1 PLM sing 442 n n CC HC2 PLM sing 443 n n CD CE PLM sing 444 n n CD HD1 PLM sing 445 n n CD HD2 PLM sing 446 n n CE CF PLM sing 447 n n CE HE1 PLM sing 448 n n CE HE2 PLM sing 449 n n CF CG PLM sing 450 n n CF HF1 PLM sing 451 n n CF HF2 PLM sing 452 n n CG HG1 PLM sing 453 n n CG HG2 PLM sing 454 n n CG HG3 PLM sing 455 n n # _atom_sites.entry_id 8T3O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 YN9 R 1 401 1 YN9 TUG . G 7 2Y5 R 1 402 1 2Y5 2Y5 . H 8 PLM R 1 403 9 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . H 8 88.276 109.146 144.464 1 112.65 ? C1 PLM 403 R 1 HETATM 2 O O1 PLM . . . H 8 87.569 108.326 143.817 1 113.81 ? O1 PLM 403 R 1 HETATM 3 O O2 PLM . . . H 8 88.519 109.175 145.701 1 111.67 ? O2 PLM 403 R 1 HETATM 4 C C2 PLM . . . H 8 88.931 110.273 143.589 1 108.81 ? C2 PLM 403 R 1 HETATM 5 C C3 PLM . . . H 8 87.952 111.237 142.916 1 110.77 ? C3 PLM 403 R 1 HETATM 6 C C4 PLM . . . H 8 88.613 112.237 141.954 1 110.98 ? C4 PLM 403 R 1 HETATM 7 C C5 PLM . . . H 8 89.014 111.623 140.606 1 110.99 ? C5 PLM 403 R 1 HETATM 8 C C6 PLM . . . H 8 89.734 112.596 139.661 1 109.27 ? C6 PLM 403 R 1 HETATM 9 C C7 PLM . . . H 8 91.035 113.181 140.237 1 110.29 ? C7 PLM 403 R 1 HETATM 10 C C8 PLM . . . H 8 92.197 112.179 140.321 1 110.72 ? C8 PLM 403 R 1 HETATM 11 C C9 PLM . . . H 8 92.463 111.652 141.739 1 112.71 ? C9 PLM 403 R 1 HETATM 12 C CA PLM . . . H 8 93.851 111.026 141.917 1 111.83 ? CA PLM 403 R 1 HETATM 13 C CB PLM . . . H 8 94.999 111.992 141.605 1 111.44 ? CB PLM 403 R 1 HETATM 14 C CC PLM . . . H 8 96.391 111.361 141.724 1 111.58 ? CC PLM 403 R 1 HETATM 15 C CD PLM . . . H 8 97.513 112.239 141.152 1 111.55 ? CD PLM 403 R 1 HETATM 16 C CE PLM . . . H 8 97.278 112.669 139.698 1 110.91 ? CE PLM 403 R 1 HETATM 17 C CF PLM . . . H 8 97.21 111.497 138.712 1 107.9 ? CF PLM 403 R 1 HETATM 18 C CG PLM . . . H 8 96.531 111.857 137.389 1 107.81 ? CG PLM 403 R 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #