data_8T3X # _model_server_result.job_id Z2DVWT_7yaOAI17LFKMKlg _model_server_result.datetime_utc '2025-06-28 01:27:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8t3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":803}' # _entry.id 8T3X # _exptl.entry_id 8T3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8T3X _cell.length_a 76.869 _cell.length_b 99.525 _cell.length_c 110.727 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8T3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 429 A CYS 429 1_555 A SG CYS 443 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 507 A CYS 507 1_555 A SG CYS 510 A CYS 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 C O3' DG 11 P DG 11 1_555 C P YTI 12 P YTI 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? metalc ? metalc1 A OD2 ASP 405 A ASP 405 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 A O PHE 406 A PHE 406 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A OD2 ASP 543 A ASP 543 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc4 D O2B 9O7 . A 9O7 801 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc5 D O2G 9O7 . A 9O7 801 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 D O3A 9O7 . A 9O7 801 1_555 E MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? hydrog WATSON-CRICK hydrog1 B N3 DC 5 T DC 11 1_555 C N1 DG 11 P DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 5 T DC 11 1_555 C O6 DG 11 P DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 5 T DC 11 1_555 C N2 DG 11 P DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 6 T DG 12 1_555 C N3 DC 10 P DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 6 T DG 12 1_555 C O2 DC 10 P DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 6 T DG 12 1_555 C N4 DC 10 P DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 7 T DC 13 1_555 C N1 DG 9 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 7 T DC 13 1_555 C O6 DG 9 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 7 T DC 13 1_555 C N2 DG 9 P DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DA 8 T DA 14 1_555 C N3 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 DA 8 T DA 14 1_555 C O4 DT 8 P DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DG 9 T DG 15 1_555 C N3 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N2 DG 9 T DG 15 1_555 C O2 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O6 DG 9 T DG 15 1_555 C N4 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DT 10 T DT 16 1_555 C N1 DA 6 P DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O4 DT 10 T DT 16 1_555 C N6 DA 6 P DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 11 T DT 17 1_555 C N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 11 T DT 17 1_555 C N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DC 12 T DC 18 1_555 C N1 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N4 DC 12 T DC 18 1_555 C O6 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O2 DC 12 T DC 18 1_555 C N2 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 DG 13 T DG 19 1_555 C N3 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 DG 13 T DG 19 1_555 C O2 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 DG 13 T DG 19 1_555 C N4 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 DC 14 T DC 20 1_555 C N1 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N4 DC 14 T DC 20 1_555 C O6 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O2 DC 14 T DC 20 1_555 C N2 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N1 DG 15 T DG 21 1_555 C N3 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N2 DG 15 T DG 21 1_555 C O2 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O6 DG 15 T DG 21 1_555 C N4 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 277 n n N1 C6 EPE sing 278 n n N1 C9 EPE sing 279 n n C2 C3 EPE sing 280 n n C2 H21 EPE sing 281 n n C2 H22 EPE sing 282 n n C3 N4 EPE sing 283 n n C3 H31 EPE sing 284 n n C3 H32 EPE sing 285 n n N4 C5 EPE sing 286 n n N4 C7 EPE sing 287 n n C5 C6 EPE sing 288 n n C5 H51 EPE sing 289 n n C5 H52 EPE sing 290 n n C6 H61 EPE sing 291 n n C6 H62 EPE sing 292 n n C7 C8 EPE sing 293 n n C7 H71 EPE sing 294 n n C7 H72 EPE sing 295 n n C8 O8 EPE sing 296 n n C8 H81 EPE sing 297 n n C8 H82 EPE sing 298 n n O8 HO8 EPE sing 299 n n C9 C10 EPE sing 300 n n C9 H91 EPE sing 301 n n C9 H92 EPE sing 302 n n C10 S EPE sing 303 n n C10 H101 EPE sing 304 n n C10 H102 EPE sing 305 n n S O1S EPE doub 306 n n S O2S EPE doub 307 n n S O3S EPE sing 308 n n O3S HOS3 EPE sing 309 n n # _atom_sites.entry_id 8T3X _atom_sites.fract_transf_matrix[1][1] 0.013009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 9O7 A 1 801 13 9O7 9O7 . E 5 MG A 1 802 14 MG MG . F 6 EPE A 1 803 1 EPE EPE . G 7 HOH A 1 901 60 HOH HOH . G 7 HOH A 2 902 10 HOH HOH . G 7 HOH A 3 903 42 HOH HOH . G 7 HOH A 4 904 12 HOH HOH . G 7 HOH A 5 905 26 HOH HOH . G 7 HOH A 6 906 29 HOH HOH . G 7 HOH A 7 907 13 HOH HOH . G 7 HOH A 8 908 9 HOH HOH . G 7 HOH A 9 909 5 HOH HOH . G 7 HOH A 10 910 11 HOH HOH . G 7 HOH A 11 911 23 HOH HOH . G 7 HOH A 12 912 19 HOH HOH . G 7 HOH A 13 913 20 HOH HOH . G 7 HOH A 14 914 45 HOH HOH . G 7 HOH A 15 915 7 HOH HOH . G 7 HOH A 16 916 21 HOH HOH . G 7 HOH A 17 917 43 HOH HOH . G 7 HOH A 18 918 16 HOH HOH . G 7 HOH A 19 919 40 HOH HOH . G 7 HOH A 20 920 36 HOH HOH . G 7 HOH A 21 921 32 HOH HOH . G 7 HOH A 22 922 27 HOH HOH . G 7 HOH A 23 923 3 HOH HOH . G 7 HOH A 24 924 41 HOH HOH . G 7 HOH A 25 925 4 HOH HOH . G 7 HOH A 26 926 18 HOH HOH . G 7 HOH A 27 927 14 HOH HOH . G 7 HOH A 28 928 22 HOH HOH . G 7 HOH A 29 929 50 HOH HOH . G 7 HOH A 30 930 28 HOH HOH . G 7 HOH A 31 931 15 HOH HOH . G 7 HOH A 32 932 31 HOH HOH . G 7 HOH A 33 933 54 HOH HOH . G 7 HOH A 34 934 17 HOH HOH . G 7 HOH A 35 935 59 HOH HOH . G 7 HOH A 36 936 48 HOH HOH . G 7 HOH A 37 937 61 HOH HOH . G 7 HOH A 38 938 55 HOH HOH . G 7 HOH A 39 939 57 HOH HOH . G 7 HOH A 40 940 53 HOH HOH . G 7 HOH A 41 941 49 HOH HOH . H 7 HOH T 1 101 46 HOH HOH . H 7 HOH T 2 102 39 HOH HOH . I 7 HOH P 1 101 47 HOH HOH . I 7 HOH P 2 102 35 HOH HOH . I 7 HOH P 3 103 33 HOH HOH . I 7 HOH P 4 104 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 6 21.527 0.395 18.665 1 44.7 ? N1 EPE 803 A 1 HETATM 2 C C2 EPE . . . F 6 20.629 -0.8 18.599 1 44.31 ? C2 EPE 803 A 1 HETATM 3 C C3 EPE . . . F 6 20.956 -1.788 19.733 1 45.18 ? C3 EPE 803 A 1 HETATM 4 N N4 EPE . . . F 6 22.374 -2.228 19.614 1 46.17 ? N4 EPE 803 A 1 HETATM 5 C C5 EPE . . . F 6 23.239 -1.021 19.765 1 45.74 ? C5 EPE 803 A 1 HETATM 6 C C6 EPE . . . F 6 22.946 -0.075 18.6 1 45.54 ? C6 EPE 803 A 1 HETATM 7 C C7 EPE . . . F 6 22.766 -3.202 20.672 1 47.21 ? C7 EPE 803 A 1 HETATM 8 C C8 EPE . . . F 6 22.008 -3.032 22.006 1 47.12 ? C8 EPE 803 A 1 HETATM 9 O O8 EPE . . . F 6 21.015 -3.985 22.063 1 46.26 ? O8 EPE 803 A 1 HETATM 10 C C9 EPE . . . F 6 21.305 1.288 17.471 1 43.52 ? C9 EPE 803 A 1 HETATM 11 C C10 EPE . . . F 6 22.226 2.487 17.447 1 43.52 ? C10 EPE 803 A 1 HETATM 12 S S EPE . . . F 6 22.82 2.781 15.778 1 43.03 ? S EPE 803 A 1 HETATM 13 O O1S EPE . . . F 6 23.873 1.822 15.615 1 44.03 ? O1S EPE 803 A 1 HETATM 14 O O2S EPE . . . F 6 23.27 4.142 15.797 1 42.35 ? O2S EPE 803 A 1 HETATM 15 O O3S EPE . . . F 6 21.678 2.54 14.952 1 42.96 -1 O3S EPE 803 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #